Wall clock time and date at job start Tue Mar 31 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47246 * 2 1 4 4 C 1.50698 * 109.47169 * 120.00445 * 2 1 3 5 5 O 1.21283 * 120.00411 * 120.00010 * 4 2 1 6 6 N 1.34777 * 119.99877 * 299.99582 * 4 2 1 7 7 C 1.46500 * 119.99860 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.47185 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47403 * 180.02562 * 8 7 6 10 10 C 1.46497 * 119.99742 * 270.00031 * 9 8 7 11 11 C 1.36933 * 120.00136 * 89.99588 * 9 8 7 12 12 H 1.08006 * 120.00236 * 22.34366 * 11 9 8 13 13 C 1.38814 * 120.00208 * 202.34237 * 11 9 8 14 14 N 1.31617 * 119.99739 * 11.35742 * 13 11 9 15 15 Si 1.86802 * 120.00186 * 191.35680 * 13 11 9 16 16 H 1.48497 * 109.47031 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47173 * 119.99993 * 15 13 11 18 18 H 1.48501 * 109.47037 * 240.00270 * 15 13 11 19 19 C 1.50706 * 109.47002 * 240.00046 * 2 1 3 20 20 C 1.38423 * 122.53549 * 120.00095 * 19 2 1 21 21 C 1.33393 * 114.91780 * 179.97438 * 20 19 2 22 22 S 1.75883 * 109.59308 * 359.97438 * 21 20 19 23 23 C 1.33389 * 122.54180 * 299.71008 * 19 2 1 24 24 H 1.09005 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46914 * 299.99720 * 1 2 3 26 26 H 1.08999 * 109.46964 * 59.99647 * 1 2 3 27 27 H 0.96998 * 119.99856 * 0.02562 * 6 4 2 28 28 H 1.08996 * 109.47457 * 300.00103 * 7 6 4 29 29 H 1.09001 * 109.47393 * 60.00538 * 7 6 4 30 30 H 1.09005 * 109.46816 * 300.00079 * 8 7 6 31 31 H 1.08997 * 109.47169 * 59.99476 * 8 7 6 32 32 H 1.08993 * 109.47280 * 94.20525 * 10 9 8 33 33 H 1.09002 * 109.46967 * 214.20854 * 10 9 8 34 34 H 1.09003 * 109.47178 * 334.20577 * 10 9 8 35 35 H 0.96995 * 119.99936 * 179.97438 * 14 13 11 36 36 H 1.08000 * 122.54048 * 359.95437 * 20 19 2 37 37 H 1.07996 * 125.19994 * 179.97438 * 21 20 19 38 38 H 1.08002 * 125.19876 * 0.02562 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9411 3.6506 8 6 1.6843 -0.2202 4.9000 9 7 2.1727 -0.9108 6.0961 10 6 1.3811 -1.9889 6.6939 11 6 3.3690 -0.5487 6.6553 12 1 3.7766 0.4341 6.4695 13 6 4.0581 -1.4448 7.4611 14 7 3.6857 -2.7062 7.5103 15 14 5.5138 -0.8603 8.4753 16 1 5.7266 0.5912 8.2451 17 1 5.2409 -1.0978 9.9156 18 1 6.7308 -1.6097 8.0720 19 6 2.0323 -0.7104 -1.2305 20 6 2.8306 -0.0889 -2.1753 21 6 3.1884 -0.8597 -3.2035 22 16 2.5000 -2.4659 -3.0042 23 6 1.7460 -1.9874 -1.4889 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.1489 0.5384 2.5435 28 1 1.8309 -1.9686 3.6505 29 1 3.2847 -0.9415 3.6508 30 1 2.0478 0.8075 4.9004 31 1 0.5944 -0.2200 4.8996 32 1 1.7207 -2.9483 6.3037 33 1 1.5046 -1.9727 7.7768 34 1 0.3291 -1.8476 6.4460 35 1 4.1674 -3.3324 8.0730 36 1 3.1400 0.9420 -2.0867 37 1 3.8062 -0.5455 -4.0317 38 1 1.1423 -2.6288 -0.8640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753063752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:28 Heat of formation + Delta-G solvation = 16.397575 kcal Electronic energy + Delta-G solvation = -19529.009387 eV Core-core repulsion = 16498.973006 eV Total energy + Delta-G solvation = -3030.036381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98794 -37.79045 -35.98297 -34.14349 -33.14266 -31.23203 -28.96939 -27.89791 -25.88150 -25.43223 -23.74602 -22.42474 -20.63605 -20.02994 -18.65504 -17.83048 -16.89058 -16.65462 -15.74038 -15.08901 -14.87188 -14.66401 -14.06040 -13.76091 -13.54003 -13.16742 -13.11822 -12.80754 -12.47283 -12.40809 -12.30124 -12.16175 -11.74077 -11.50447 -11.19208 -10.88294 -10.84643 -10.75151 -10.59635 -10.26782 -9.97728 -9.90094 -9.46758 -8.79332 -8.61778 -8.54822 -8.42572 -6.82439 -5.74861 -3.22041 1.00607 1.63359 1.94924 2.61065 2.93606 3.37495 3.44383 3.46726 3.60182 4.49558 4.59669 4.76804 4.95436 5.11306 5.18720 5.28007 5.40683 5.52950 5.57886 5.62719 5.64892 5.88002 5.91248 5.96945 6.00865 6.27569 6.33231 6.43961 6.69724 6.72798 6.76075 7.00136 7.36250 7.71537 7.79950 7.85421 8.36598 8.56383 9.20686 9.82765 10.30780 11.30284 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.003242 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.392672 B = 8635.145576 C = 8969.268046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 H 0.103 0.897 4 C 0.509 3.491 5 O -0.533 6.533 6 N -0.724 5.724 7 C 0.095 3.905 8 C 0.144 3.856 9 N -0.597 5.597 10 C 0.162 3.838 11 C -0.260 4.260 12 H 0.071 0.929 13 C 0.003 3.997 14 N -0.906 5.906 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.289 1.289 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.220 4.220 22 S 0.086 5.914 23 C -0.170 4.170 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.394 0.606 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.047 0.953 34 H -0.002 1.002 35 H 0.253 0.747 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 6.425 -19.439 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 H 0.121 0.879 4 C 0.293 3.707 5 O -0.409 6.409 6 N -0.376 5.376 7 C -0.030 4.030 8 C 0.016 3.984 9 N -0.319 5.319 10 C 0.018 3.982 11 C -0.390 4.390 12 H 0.088 0.912 13 C -0.195 4.195 14 N -0.550 5.550 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.216 1.216 19 C -0.104 4.104 20 C -0.154 4.154 21 C -0.355 4.355 22 S 0.350 5.650 23 C -0.306 4.306 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.227 0.773 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.992 4.193 -20.212 21.795 hybrid contribution 0.734 1.739 1.408 2.354 sum -6.258 5.932 -18.805 20.688 Atomic orbital electron populations 1.21783 0.92162 1.02982 1.02700 1.20014 0.97352 0.99919 0.90321 0.87927 1.20437 0.80741 0.84978 0.84539 1.90728 1.37383 1.26196 1.86593 1.46174 1.53351 1.31912 1.06136 1.22501 1.00332 0.96922 0.83288 1.20992 0.96266 0.95511 0.85650 1.43933 1.21666 1.40914 1.25420 1.20845 0.88584 0.90832 0.97957 1.19272 0.97197 0.96970 1.25528 0.91160 1.25070 0.98223 0.94925 1.01305 1.70076 1.41788 1.01815 1.41340 0.86153 0.82279 0.78052 0.79869 1.20273 1.21560 1.21627 1.18353 1.01119 0.94141 0.96826 1.20031 0.99866 1.01288 0.94178 1.25468 1.08638 0.96835 1.04568 1.84194 1.48131 1.13307 1.19406 1.25355 1.06420 0.98922 0.99879 0.91975 0.91579 0.91395 0.77272 0.92321 0.91433 0.93366 0.94016 0.95255 0.93415 0.98395 0.93679 0.84372 0.82049 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.92 37.16 0.33 -0.86 16 2 C -0.05 -0.58 2.97 -92.92 -0.28 -0.85 16 3 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 4 C 0.51 7.91 7.05 -10.99 -0.08 7.83 16 5 O -0.53 -10.84 15.22 5.55 0.08 -10.76 16 6 N -0.72 -10.70 5.45 -60.29 -0.33 -11.03 16 7 C 0.10 1.86 6.00 -4.04 -0.02 1.83 16 8 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 9 N -0.60 -14.94 2.93 -181.12 -0.53 -15.47 16 10 C 0.16 4.01 9.01 59.85 0.54 4.55 16 11 C -0.26 -7.15 9.67 -15.06 -0.15 -7.30 16 12 H 0.07 1.88 7.84 -52.48 -0.41 1.47 16 13 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 14 N -0.91 -26.64 10.59 55.49 0.59 -26.06 16 15 Si 0.91 21.98 29.57 -169.99 -5.03 16.96 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 C -0.09 -1.13 4.29 -106.25 -0.46 -1.58 16 20 C -0.12 -1.34 9.92 -41.21 -0.41 -1.74 16 21 C -0.22 -2.24 11.23 29.04 0.33 -1.92 16 22 S 0.09 0.95 23.34 -107.50 -2.51 -1.56 16 23 C -0.17 -2.16 9.25 29.04 0.27 -1.89 16 24 H 0.06 0.58 7.76 -51.93 -0.40 0.18 16 25 H 0.07 0.48 7.56 -51.93 -0.39 0.08 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.39 4.38 7.89 -40.82 -0.32 4.06 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 31 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 32 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 33 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 34 H 0.00 -0.05 7.85 -51.93 -0.41 -0.46 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.16 2.05 7.96 -52.49 -0.42 1.63 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -33.06 331.92 -8.36 -41.42 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.60 Total: 0.61 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.04 Total: 0.88 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.27 Total: -52.55 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.06 -8.36 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753063752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.815 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds