Wall clock time and date at job start Tue Mar 31 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.94386 * 2 1 4 4 C 1.38129 * 120.05645 * 179.74813 * 3 2 1 5 5 C 1.38757 * 119.94215 * 0.50459 * 4 3 2 6 6 O 1.35896 * 120.05812 * 179.74387 * 5 4 3 7 7 C 1.42901 * 116.99684 * 354.54247 * 6 5 4 8 8 H 1.09001 * 109.47103 * 324.33108 * 7 6 5 9 9 C 1.50704 * 109.47321 * 84.33133 * 7 6 5 10 10 H 1.07995 * 120.00133 * 240.00184 * 9 7 6 11 11 C 1.37877 * 119.99919 * 59.99585 * 9 7 6 12 12 N 1.31518 * 120.00095 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99913 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46829 * 90.00668 * 13 11 9 15 15 H 1.48503 * 109.46794 * 210.00109 * 13 11 9 16 16 H 1.48497 * 109.46977 * 330.00105 * 13 11 9 17 17 C 1.50702 * 109.47033 * 204.33174 * 7 6 5 18 18 C 1.38238 * 119.99792 * 324.72432 * 17 7 6 19 19 C 1.38238 * 119.99842 * 179.80925 * 18 17 7 20 20 C 1.38238 * 119.99660 * 0.40283 * 19 18 17 21 21 C 1.38234 * 120.00273 * 359.84899 * 20 19 18 22 22 C 1.38229 * 119.99758 * 359.96617 * 21 20 19 23 23 C 1.38710 * 119.88438 * 359.47736 * 5 4 3 24 24 C 1.50703 * 120.02642 * 180.29805 * 23 5 4 25 25 C 1.38165 * 119.94830 * 0.26927 * 23 5 4 26 26 H 1.09006 * 109.46962 * 270.02116 * 1 2 3 27 27 H 1.09005 * 109.47089 * 30.01574 * 1 2 3 28 28 H 1.08994 * 109.47088 * 150.02248 * 1 2 3 29 29 H 1.08005 * 119.97617 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.03114 * 180.27769 * 4 3 2 31 31 H 0.96996 * 120.00007 * 179.97438 * 12 11 9 32 32 H 1.07994 * 119.99876 * 359.97438 * 18 17 7 33 33 H 1.07998 * 119.99973 * 180.23019 * 19 18 17 34 34 H 1.08001 * 119.99611 * 179.83404 * 20 19 18 35 35 H 1.08000 * 119.99836 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.00133 * 179.97438 * 22 21 20 37 37 H 1.08995 * 109.47394 * 89.99614 * 24 23 5 38 38 H 1.08995 * 109.47027 * 209.99915 * 24 23 5 39 39 H 1.09007 * 109.46606 * 329.99652 * 24 23 5 40 40 H 1.08006 * 119.97208 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0053 5 6 4.2735 0.0000 -0.0001 6 8 5.6325 0.0000 -0.0002 7 6 6.2812 1.2680 -0.1158 8 1 5.7022 1.9135 -0.7763 9 6 6.3843 1.9056 1.2459 10 1 5.9169 2.8613 1.4314 11 6 7.0753 1.2686 2.2548 12 7 7.6448 0.1049 2.0287 13 14 7.2037 2.0592 3.9424 14 1 6.0625 1.6180 4.7838 15 1 8.4790 1.6509 4.5844 16 1 7.1719 3.5370 3.8003 17 6 7.6627 1.0753 -0.6862 18 6 8.3964 -0.0488 -0.3556 19 6 9.6621 -0.2275 -0.8819 20 6 10.1974 0.7220 -1.7322 21 6 9.4658 1.8485 -2.0586 22 6 8.1987 2.0253 -1.5353 23 6 3.5787 -1.2005 0.0003 24 6 4.3303 -2.5068 0.0014 25 6 2.1971 -1.1979 0.0004 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6559 2.1329 0.0004 30 1 4.1172 2.1371 0.0098 31 1 8.1312 -0.3430 2.7384 32 1 7.9796 -0.7885 0.3118 33 1 10.2338 -1.1074 -0.6266 34 1 11.1873 0.5836 -2.1413 35 1 9.8842 2.5904 -2.7226 36 1 7.6272 2.9057 -1.7900 37 1 4.5112 -2.8211 1.0292 38 1 3.7403 -3.2658 -0.5122 39 1 5.2831 -2.3781 -0.5122 40 1 1.6557 -2.1324 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:22 Heat of formation + Delta-G solvation = 6.859264 kcal Electronic energy + Delta-G solvation = -21951.750273 eV Core-core repulsion = 18889.396672 eV Total energy + Delta-G solvation = -3062.353601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.41605 -38.17380 -36.51987 -33.32640 -32.31117 -30.92522 -30.48179 -29.69085 -27.09561 -26.65527 -25.43325 -23.30195 -21.62345 -21.46710 -19.97577 -19.87369 -17.45077 -16.12576 -16.09537 -15.13215 -14.98417 -14.35704 -13.99128 -13.88876 -13.81548 -13.27628 -13.19573 -12.82256 -12.60295 -12.52612 -12.34779 -12.07721 -11.79630 -11.65976 -11.57006 -11.35664 -11.03989 -10.87428 -10.67259 -10.52213 -10.39519 -10.20771 -10.06525 -9.33992 -9.18198 -8.83785 -8.11945 -7.86338 -7.56180 -6.97917 -6.08935 -4.43929 2.02658 2.21871 2.39019 2.55341 3.19456 3.26320 3.28576 4.23696 4.45122 4.49584 4.95212 5.12527 5.34170 5.39467 5.58979 5.75172 5.76168 5.83797 5.87181 5.88276 5.96486 6.03525 6.16007 6.23397 6.30834 6.35268 6.39726 6.50798 6.54641 6.60878 6.79315 6.88810 7.00539 7.08839 7.20599 7.23491 7.28591 7.42342 7.51702 7.65565 7.73796 7.87133 7.97498 8.20729 8.48650 8.87481 9.32783 10.74505 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.006360 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.682785 B = 4401.640655 C = 5209.768728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.156 4.156 3 C -0.090 4.090 4 C -0.200 4.200 5 C 0.172 3.828 6 O -0.290 6.290 7 C 0.240 3.760 8 H 0.033 0.967 9 C -0.543 4.543 10 H 0.066 0.934 11 C 0.085 3.915 12 N -0.845 5.845 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.044 4.044 18 C -0.045 4.045 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.094 4.094 25 C -0.088 4.088 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.265 0.735 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -1.684 -4.660 7.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C -0.108 4.108 4 C -0.219 4.219 5 C 0.123 3.877 6 O -0.202 6.202 7 C 0.186 3.814 8 H 0.051 0.949 9 C -0.580 4.580 10 H 0.084 0.916 11 C -0.122 4.122 12 N -0.480 5.480 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.044 4.044 18 C -0.064 4.064 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.151 4.151 25 C -0.106 4.106 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.182 0.818 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.895 -1.980 -4.549 6.970 hybrid contribution 0.284 0.890 1.169 1.496 sum -4.611 -1.090 -3.380 5.820 Atomic orbital electron populations 1.20586 0.92220 1.01548 1.01196 1.19515 0.95194 0.93256 1.07678 1.20699 0.93688 0.96779 0.99615 1.21368 0.94460 0.98391 1.07681 1.18897 0.84800 0.92555 0.91458 1.86236 1.13287 1.36004 1.84677 1.18956 0.86704 0.80480 0.95280 0.94935 1.21364 1.35395 1.06549 0.94665 0.91581 1.25001 0.93469 0.94622 0.99103 1.69797 1.31975 1.14239 1.31978 0.86541 0.77725 0.79824 0.83714 1.20289 1.20872 1.19689 1.19793 0.97204 0.94017 0.93400 1.21876 0.92458 0.98798 0.93273 1.21157 0.97405 0.99060 0.99459 1.20850 0.98972 0.95713 1.00606 1.20703 0.95372 0.98201 1.02407 1.20753 0.95979 0.98966 0.98682 1.19212 0.93007 0.93879 1.07965 1.20468 0.99897 0.93019 1.01721 1.20519 0.92580 0.96919 1.00567 0.92384 0.92500 0.92526 0.87170 0.85041 0.92448 0.81836 0.87889 0.88136 0.87834 0.87679 0.92070 0.93103 0.91139 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.16 -2.56 5.88 -104.60 -0.62 -3.17 16 3 C -0.09 -1.58 9.69 -39.60 -0.38 -1.96 16 4 C -0.20 -4.08 8.69 -39.43 -0.34 -4.43 16 5 C 0.17 3.75 6.56 -39.22 -0.26 3.49 16 6 O -0.29 -6.95 7.40 -19.41 -0.14 -7.09 16 7 C 0.24 5.73 2.11 -29.03 -0.06 5.67 16 8 H 0.03 0.75 6.26 -51.93 -0.33 0.42 16 9 C -0.54 -13.95 7.93 -34.44 -0.27 -14.23 16 10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 12 N -0.85 -21.91 8.50 55.43 0.47 -21.43 16 13 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.04 -1.02 4.80 -104.62 -0.50 -1.52 16 18 C -0.05 -1.04 7.46 -39.58 -0.30 -1.34 16 19 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 20 C -0.14 -2.70 10.05 -39.58 -0.40 -3.09 16 21 C -0.15 -2.82 10.05 -39.59 -0.40 -3.21 16 22 C -0.13 -2.63 9.68 -39.59 -0.38 -3.01 16 23 C -0.14 -2.72 5.89 -104.47 -0.62 -3.33 16 24 C -0.09 -1.64 9.79 36.01 0.35 -1.29 16 25 C -0.09 -1.49 9.35 -39.61 -0.37 -1.86 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.13 2.73 5.68 -52.49 -0.30 2.43 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.16 4.08 5.50 -52.49 -0.29 3.79 16 33 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 2.01 8.06 -52.48 -0.42 1.58 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.07 1.31 7.53 -51.92 -0.39 0.92 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -26.99 329.98 -9.88 -36.87 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.49 Total: 6.78 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: -4.67 Total: -35.57 kcal Atomic # 7 Polarization: -21.91 SS G_CDS: 0.47 Total: -21.43 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.14 Total: -7.09 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.99 -9.88 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.729 kcal (2) G-P(sol) polarization free energy of solvation -26.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds