Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.94617 * 2 1 4 4 C 1.38118 * 120.05477 * 180.02562 * 3 2 1 5 5 C 1.38757 * 119.94548 * 359.97280 * 4 3 2 6 6 O 1.35900 * 120.05416 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00366 * 7.11220 * 6 5 4 8 8 H 1.08999 * 109.46698 * 37.37322 * 7 6 5 9 9 C 1.50708 * 109.46900 * 277.37729 * 7 6 5 10 10 H 1.07998 * 120.00043 * 125.61373 * 9 7 6 11 11 C 1.37873 * 119.99817 * 305.61013 * 9 7 6 12 12 N 1.31516 * 120.00067 * 9.52406 * 11 9 7 13 13 Si 1.86796 * 119.99862 * 189.52351 * 11 9 7 14 14 H 1.48501 * 109.47549 * 59.99997 * 13 11 9 15 15 H 1.48499 * 109.47249 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47193 * 299.99954 * 13 11 9 17 17 C 1.50692 * 109.47404 * 157.37397 * 7 6 5 18 18 C 1.38239 * 120.00210 * 29.53362 * 17 7 6 19 19 C 1.38230 * 120.00618 * 180.34438 * 18 17 7 20 20 C 1.38241 * 119.99691 * 359.88380 * 19 18 17 21 21 C 1.38231 * 119.99930 * 0.08741 * 20 19 18 22 22 C 1.38233 * 120.00352 * 209.80125 * 17 7 6 23 23 C 1.38710 * 119.88866 * 0.28077 * 5 4 3 24 24 C 1.50697 * 120.02911 * 179.72332 * 23 5 4 25 25 C 1.38169 * 119.94280 * 359.44319 * 23 5 4 26 26 H 1.09001 * 109.46814 * 90.00249 * 1 2 3 27 27 H 1.08995 * 109.47343 * 209.99943 * 1 2 3 28 28 H 1.08995 * 109.47176 * 330.00643 * 1 2 3 29 29 H 1.07995 * 119.97308 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.02782 * 179.97438 * 4 3 2 31 31 H 0.97004 * 119.99892 * 180.02562 * 12 11 9 32 32 H 1.08005 * 119.99629 * 0.27118 * 18 17 7 33 33 H 1.07997 * 120.00080 * 180.02562 * 19 18 17 34 34 H 1.08003 * 119.99994 * 180.11069 * 20 19 18 35 35 H 1.07999 * 119.99963 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.99828 * 359.70630 * 22 17 7 37 37 H 1.09004 * 109.46895 * 89.99667 * 24 23 5 38 38 H 1.09001 * 109.47201 * 209.99359 * 24 23 5 39 39 H 1.08994 * 109.47240 * 330.00030 * 24 23 5 40 40 H 1.07998 * 119.97509 * 180.27891 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0002 -0.0005 6 8 5.6324 -0.0002 -0.0005 7 6 6.2813 1.2632 0.1571 8 1 5.7185 1.8751 0.8621 9 6 6.3468 1.9640 -1.1756 10 1 5.9523 2.9639 -1.2798 11 6 6.9104 1.3285 -2.2616 12 7 7.2195 0.0522 -2.1892 13 14 7.2349 2.2802 -3.8358 14 1 8.1664 3.4017 -3.5532 15 1 7.8407 1.3753 -4.8454 16 1 5.9549 2.8202 -4.3605 17 6 7.6778 1.0489 0.6812 18 6 8.3603 -0.1135 0.3745 19 6 9.6386 -0.3133 0.8611 20 6 10.2354 0.6504 1.6524 21 6 9.5532 1.8129 1.9586 22 6 8.2743 2.0121 1.4731 23 6 3.5787 -1.2007 -0.0058 24 6 4.3302 -2.5069 -0.0121 25 6 2.1970 -1.1980 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6560 2.1327 -0.0004 30 1 4.1172 2.1370 -0.0010 31 1 7.6163 -0.3948 -2.9531 32 1 7.8943 -0.8661 -0.2443 33 1 10.1719 -1.2212 0.6211 34 1 11.2349 0.4951 2.0311 35 1 10.0193 2.5656 2.5771 36 1 7.7412 2.9205 1.7124 37 1 4.5118 -2.8265 1.0141 38 1 3.7398 -3.2633 -0.5291 39 1 5.2826 -2.3757 -0.5256 40 1 1.6556 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = 2.839197 kcal Electronic energy + Delta-G solvation = -21958.023659 eV Core-core repulsion = 18895.495735 eV Total energy + Delta-G solvation = -3062.527924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.36677 -38.23319 -36.50289 -33.23342 -32.22731 -30.92394 -30.52928 -29.85286 -27.04278 -26.60173 -25.38619 -23.28880 -21.65588 -21.53958 -19.97903 -19.81776 -17.40040 -16.17833 -16.03877 -15.10775 -14.93780 -14.34311 -14.03149 -13.86772 -13.81972 -13.25756 -13.19442 -12.74632 -12.65840 -12.50106 -12.40555 -12.03677 -11.78702 -11.74777 -11.53974 -11.29988 -11.01825 -10.83217 -10.63464 -10.52667 -10.37264 -10.18015 -10.12067 -9.42332 -9.26296 -8.67698 -8.06285 -7.98029 -7.65008 -6.92724 -6.16535 -4.36105 2.08717 2.27116 2.30492 2.40474 3.22668 3.27281 3.30337 4.27222 4.51631 4.52514 4.82674 5.13767 5.38940 5.44398 5.64709 5.67921 5.77368 5.80068 5.89815 5.90635 5.91725 6.06255 6.18808 6.20577 6.29951 6.36513 6.43614 6.50630 6.57457 6.62937 6.67673 6.90496 6.95536 7.07019 7.16816 7.27658 7.31674 7.35673 7.50276 7.66058 7.70504 7.82416 7.88089 8.03708 8.50698 8.92458 9.36911 10.80396 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006378 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.629436 B = 4389.089739 C = 5190.846925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.199 4.199 5 C 0.176 3.824 6 O -0.281 6.281 7 C 0.241 3.759 8 H 0.032 0.968 9 C -0.556 4.556 10 H 0.065 0.935 11 C 0.089 3.911 12 N -0.837 5.837 13 Si 0.889 3.111 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.034 4.034 18 C -0.069 4.069 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.139 4.139 24 C -0.097 4.097 25 C -0.089 4.089 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.264 0.736 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -1.557 5.199 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.158 4.158 3 C -0.109 4.109 4 C -0.217 4.217 5 C 0.127 3.873 6 O -0.192 6.192 7 C 0.187 3.813 8 H 0.050 0.950 9 C -0.592 4.592 10 H 0.084 0.916 11 C -0.120 4.120 12 N -0.470 5.470 13 Si 0.716 3.284 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.034 4.034 18 C -0.087 4.087 19 C -0.159 4.159 20 C -0.165 4.165 21 C -0.156 4.156 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.154 4.154 25 C -0.107 4.107 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.873 -1.884 5.076 6.657 hybrid contribution 0.331 0.932 -1.147 1.514 sum -3.543 -0.952 3.929 5.375 Atomic orbital electron populations 1.20578 0.92307 1.01472 1.01142 1.19502 0.95128 0.93281 1.07887 1.20690 0.93750 0.96707 0.99757 1.21389 0.94392 0.98483 1.07466 1.18862 0.84761 0.92477 0.91210 1.86205 1.13239 1.35560 1.84217 1.18908 0.86339 0.80787 0.95285 0.95024 1.21243 1.42420 1.02042 0.93479 0.91646 1.24935 0.93885 0.94524 0.98653 1.69962 1.38123 1.08382 1.30579 0.86703 0.78821 0.80157 0.82734 1.19983 1.21008 1.20017 1.19946 0.97243 0.93385 0.92852 1.21483 0.93166 0.98354 0.95716 1.21139 0.96467 0.98849 0.99491 1.20856 0.99183 0.95275 1.01223 1.20785 0.95280 0.97610 1.01965 1.20761 0.95612 0.98975 0.99092 1.19190 0.92949 0.93884 1.07998 1.20499 1.00716 0.93076 1.01088 1.20510 0.92623 0.96847 1.00720 0.92439 0.92583 0.92557 0.87277 0.84952 0.92578 0.83317 0.87620 0.87837 0.87554 0.87313 0.92659 0.93115 0.90328 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.16 -2.65 5.88 -104.60 -0.62 -3.26 16 3 C -0.09 -1.64 9.69 -39.61 -0.38 -2.02 16 4 C -0.20 -4.13 8.64 -39.43 -0.34 -4.47 16 5 C 0.18 3.90 6.55 -39.21 -0.26 3.64 16 6 O -0.28 -6.73 6.67 -19.43 -0.13 -6.86 16 7 C 0.24 5.73 2.10 -29.03 -0.06 5.67 16 8 H 0.03 0.73 6.50 -51.93 -0.34 0.39 16 9 C -0.56 -14.23 7.62 -34.44 -0.26 -14.50 16 10 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 11 C 0.09 2.30 5.22 -17.82 -0.09 2.21 16 12 N -0.84 -21.92 9.57 55.43 0.53 -21.39 16 13 Si 0.89 20.56 29.55 -169.99 -5.02 15.53 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C -0.03 -0.77 4.83 -104.63 -0.51 -1.28 16 18 C -0.07 -1.55 8.13 -39.58 -0.32 -1.88 16 19 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 20 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 21 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 22 C -0.13 -2.57 9.70 -39.58 -0.38 -2.95 16 23 C -0.14 -2.76 5.89 -104.47 -0.62 -3.38 16 24 C -0.10 -1.73 9.79 36.00 0.35 -1.37 16 25 C -0.09 -1.55 9.35 -39.60 -0.37 -1.92 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.13 2.82 5.62 -52.48 -0.30 2.52 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.15 3.63 5.98 -52.48 -0.31 3.32 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.08 1.58 7.53 -51.93 -0.39 1.19 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -27.08 331.30 -9.84 -36.93 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.53 Total: 6.36 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: -4.69 Total: -35.56 kcal Atomic # 7 Polarization: -21.92 SS G_CDS: 0.53 Total: -21.39 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.13 Total: -6.86 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.08 -9.84 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.765 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds