Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.94617 * 2 1 4 4 C 1.38118 * 120.05477 * 180.02562 * 3 2 1 5 5 C 1.38757 * 119.94548 * 359.97280 * 4 3 2 6 6 O 1.35900 * 120.05416 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00366 * 7.11220 * 6 5 4 8 8 H 1.08999 * 109.46698 * 37.37322 * 7 6 5 9 9 C 1.50708 * 109.46900 * 277.37729 * 7 6 5 10 10 H 1.07998 * 120.00043 * 125.61373 * 9 7 6 11 11 C 1.37873 * 119.99817 * 305.61013 * 9 7 6 12 12 N 1.31516 * 120.00067 * 9.52406 * 11 9 7 13 13 Si 1.86796 * 119.99862 * 189.52351 * 11 9 7 14 14 H 1.48501 * 109.47549 * 59.99997 * 13 11 9 15 15 H 1.48499 * 109.47249 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47193 * 299.99954 * 13 11 9 17 17 C 1.50692 * 109.47404 * 157.37397 * 7 6 5 18 18 C 1.38239 * 120.00210 * 29.53362 * 17 7 6 19 19 C 1.38230 * 120.00618 * 180.34438 * 18 17 7 20 20 C 1.38241 * 119.99691 * 359.88380 * 19 18 17 21 21 C 1.38231 * 119.99930 * 0.08741 * 20 19 18 22 22 C 1.38233 * 120.00352 * 209.80125 * 17 7 6 23 23 C 1.38710 * 119.88866 * 0.28077 * 5 4 3 24 24 C 1.50697 * 120.02911 * 179.72332 * 23 5 4 25 25 C 1.38169 * 119.94280 * 359.44319 * 23 5 4 26 26 H 1.09001 * 109.46814 * 90.00249 * 1 2 3 27 27 H 1.08995 * 109.47343 * 209.99943 * 1 2 3 28 28 H 1.08995 * 109.47176 * 330.00643 * 1 2 3 29 29 H 1.07995 * 119.97308 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.02782 * 179.97438 * 4 3 2 31 31 H 0.97004 * 119.99892 * 180.02562 * 12 11 9 32 32 H 1.08005 * 119.99629 * 0.27118 * 18 17 7 33 33 H 1.07997 * 120.00080 * 180.02562 * 19 18 17 34 34 H 1.08003 * 119.99994 * 180.11069 * 20 19 18 35 35 H 1.07999 * 119.99963 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.99828 * 359.70630 * 22 17 7 37 37 H 1.09004 * 109.46895 * 89.99667 * 24 23 5 38 38 H 1.09001 * 109.47201 * 209.99359 * 24 23 5 39 39 H 1.08994 * 109.47240 * 330.00030 * 24 23 5 40 40 H 1.07998 * 119.97509 * 180.27891 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0002 -0.0005 6 8 5.6324 -0.0002 -0.0005 7 6 6.2813 1.2632 0.1571 8 1 5.7185 1.8751 0.8621 9 6 6.3468 1.9640 -1.1756 10 1 5.9523 2.9639 -1.2798 11 6 6.9104 1.3285 -2.2616 12 7 7.2195 0.0522 -2.1892 13 14 7.2349 2.2802 -3.8358 14 1 8.1664 3.4017 -3.5532 15 1 7.8407 1.3753 -4.8454 16 1 5.9549 2.8202 -4.3605 17 6 7.6778 1.0489 0.6812 18 6 8.3603 -0.1135 0.3745 19 6 9.6386 -0.3133 0.8611 20 6 10.2354 0.6504 1.6524 21 6 9.5532 1.8129 1.9586 22 6 8.2743 2.0121 1.4731 23 6 3.5787 -1.2007 -0.0058 24 6 4.3302 -2.5069 -0.0121 25 6 2.1970 -1.1980 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6560 2.1327 -0.0004 30 1 4.1172 2.1370 -0.0010 31 1 7.6163 -0.3948 -2.9531 32 1 7.8943 -0.8661 -0.2443 33 1 10.1719 -1.2212 0.6211 34 1 11.2349 0.4951 2.0311 35 1 10.0193 2.5656 2.5771 36 1 7.7412 2.9205 1.7124 37 1 4.5118 -2.8265 1.0141 38 1 3.7398 -3.2633 -0.5291 39 1 5.2826 -2.3757 -0.5256 40 1 1.6556 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055021186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = -7.938913 kcal Electronic energy + Delta-G solvation = -21958.491033 eV Core-core repulsion = 18895.495735 eV Total energy + Delta-G solvation = -3062.995298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93800 -39.77047 -38.07571 -34.97569 -33.79330 -32.47152 -32.04308 -31.40466 -28.82111 -27.95327 -26.81041 -25.06353 -23.19224 -23.07126 -21.56779 -21.27474 -19.15190 -17.83407 -17.66945 -16.84184 -16.58421 -15.82398 -15.63061 -15.50037 -15.31381 -14.77799 -14.62226 -14.24551 -13.99024 -13.93929 -13.85380 -13.51115 -13.35963 -13.29690 -13.17427 -12.85600 -12.63726 -12.53842 -12.24474 -11.98934 -11.97790 -11.71615 -11.68240 -11.12208 -10.98464 -10.61551 -9.54640 -9.53351 -9.27593 -8.50677 -8.07767 -6.34881 0.59734 0.71931 0.80337 0.84805 1.35800 1.36994 1.42913 2.35550 2.85571 3.02385 3.22581 3.23553 4.08350 4.11833 4.23779 4.26091 4.31929 4.44777 4.51969 4.54173 4.59015 4.73829 4.75727 4.88051 4.91147 4.96725 4.98231 5.05308 5.07766 5.15708 5.23885 5.35258 5.49496 5.54417 5.61351 5.68322 5.78661 5.83573 5.85950 5.96418 5.98734 6.15536 6.28796 6.42012 6.58655 7.16778 7.41864 8.84540 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006378 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.629436 B = 4389.089739 C = 5190.846925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.149 4.149 3 C -0.097 4.097 4 C -0.217 4.217 5 C 0.132 3.868 6 O -0.298 6.298 7 C 0.244 3.756 8 H 0.024 0.976 9 C -0.569 4.569 10 H 0.055 0.945 11 C 0.050 3.950 12 N -0.852 5.852 13 Si 0.938 3.062 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.276 1.276 17 C -0.063 4.063 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.090 4.090 25 C -0.088 4.088 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.260 0.740 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 -1.702 5.969 7.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C -0.115 4.115 4 C -0.236 4.236 5 C 0.084 3.916 6 O -0.210 6.210 7 C 0.189 3.811 8 H 0.042 0.958 9 C -0.605 4.605 10 H 0.073 0.927 11 C -0.157 4.157 12 N -0.486 5.486 13 Si 0.764 3.236 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.201 1.201 17 C -0.063 4.063 18 C -0.109 4.109 19 C -0.165 4.165 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.106 4.106 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.486 -2.028 5.852 7.647 hybrid contribution 0.426 0.964 -1.298 1.672 sum -4.060 -1.065 4.553 6.193 Atomic orbital electron populations 1.20651 0.88827 1.03311 1.02449 1.20036 0.97583 0.92356 1.04982 1.21011 0.92649 0.98668 0.99202 1.21396 0.95848 0.97452 1.08940 1.19332 0.84397 0.94072 0.93812 1.86158 1.14481 1.35132 1.85232 1.18804 0.87147 0.80816 0.94286 0.95805 1.21400 1.42534 1.01703 0.94909 0.92702 1.25507 0.94100 0.95252 1.00843 1.70112 1.38690 1.09052 1.30735 0.85936 0.78442 0.79101 0.80106 1.19804 1.20680 1.20134 1.20046 0.96958 0.94630 0.94679 1.21302 0.94722 0.98033 0.96864 1.21399 0.95418 1.00291 0.99390 1.21305 1.00605 0.94205 0.99582 1.21230 0.94131 0.98461 1.01138 1.21010 0.96920 0.98812 0.99062 1.19574 0.94330 0.93679 1.08032 1.20438 0.99331 0.93146 1.01708 1.20925 0.91627 0.98703 0.99372 0.91214 0.90529 0.91078 0.84878 0.86775 0.93016 0.86205 0.85602 0.83797 0.83723 0.86421 0.91522 0.90367 0.93679 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 10.01 71.24 0.71 -1.37 16 2 C -0.15 -4.69 5.88 -19.85 -0.12 -4.81 16 3 C -0.10 -3.47 9.69 22.25 0.22 -3.25 16 4 C -0.22 -9.48 8.64 22.37 0.19 -9.29 16 5 C 0.13 6.13 6.55 22.51 0.15 6.28 16 6 O -0.30 -15.28 6.67 -92.42 -0.62 -15.90 16 7 C 0.24 12.37 2.10 29.10 0.06 12.43 16 8 H 0.02 1.19 6.50 -2.39 -0.02 1.18 16 9 C -0.57 -30.75 7.62 25.60 0.19 -30.56 16 10 H 0.05 2.96 7.83 -2.91 -0.02 2.94 16 11 C 0.05 2.67 5.22 84.65 0.44 3.11 16 12 N -0.85 -46.84 9.57 21.45 0.21 -46.64 16 13 Si 0.94 43.38 29.55 68.60 2.03 45.40 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 C -0.06 -2.98 4.83 -19.87 -0.10 -3.08 16 18 C -0.09 -4.26 8.13 22.27 0.18 -4.08 16 19 C -0.15 -5.70 10.05 22.27 0.22 -5.48 16 20 C -0.14 -4.66 10.05 22.27 0.22 -4.43 16 21 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 22 C -0.14 -5.72 9.70 22.27 0.22 -5.51 16 23 C -0.16 -6.23 5.89 -19.77 -0.12 -6.35 16 24 C -0.09 -3.23 9.79 71.24 0.70 -2.54 16 25 C -0.09 -2.92 9.35 22.26 0.21 -2.71 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 28 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 29 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.11 5.25 5.62 -2.91 -0.02 5.23 16 31 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.12 6.27 5.98 -2.91 -0.02 6.25 16 33 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 39 H 0.04 1.91 7.53 -2.39 -0.02 1.89 16 40 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -62.07 331.30 6.25 -55.82 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 1.02 Total: 27.21 kcal Atomic # 6 Polarization: -69.51 SS G_CDS: 3.61 Total: -65.90 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.21 Total: -46.64 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.62 Total: -15.90 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -62.07 6.25 -55.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.885 kcal (2) G-P(sol) polarization free energy of solvation -62.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds