Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.97255 * 2 1 4 4 C 1.38245 * 120.11319 * 179.72773 * 3 2 1 5 5 C 1.38166 * 120.05475 * 0.54859 * 4 3 2 6 6 C 1.38719 * 119.94278 * 359.47698 * 5 4 3 7 7 O 1.35902 * 120.05736 * 180.22887 * 6 5 4 8 8 C 1.42899 * 116.99616 * 355.02124 * 7 6 5 9 9 H 1.08995 * 109.47382 * 325.79010 * 8 7 6 10 10 C 1.50699 * 109.47212 * 85.79554 * 8 7 6 11 11 H 1.07998 * 120.00485 * 54.88094 * 10 8 7 12 12 C 1.37881 * 119.99831 * 234.88530 * 10 8 7 13 13 N 1.31509 * 119.99877 * 170.71833 * 12 10 8 14 14 Si 1.86804 * 119.99796 * 350.72055 * 12 10 8 15 15 H 1.48507 * 109.47070 * 91.52385 * 14 12 10 16 16 H 1.48499 * 109.47066 * 211.51921 * 14 12 10 17 17 H 1.48501 * 109.46986 * 331.52131 * 14 12 10 18 18 C 1.50700 * 109.46624 * 205.79054 * 8 7 6 19 19 C 1.38239 * 120.00041 * 321.27332 * 18 8 7 20 20 C 1.38238 * 119.99780 * 179.81044 * 19 18 8 21 21 C 1.38238 * 120.00017 * 0.39493 * 20 19 18 22 22 C 1.38240 * 119.99885 * 359.86081 * 21 20 19 23 23 C 1.38230 * 119.99864 * 359.95204 * 22 21 20 24 24 C 1.38126 * 119.97348 * 180.02562 * 2 1 3 25 25 C 1.50702 * 120.02563 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.46810 * 269.98173 * 1 2 3 27 27 H 1.08999 * 109.46677 * 29.97279 * 1 2 3 28 28 H 1.08992 * 109.47384 * 149.97786 * 1 2 3 29 29 H 1.08005 * 119.94650 * 0.02608 * 3 2 1 30 30 H 1.08002 * 119.97722 * 180.27698 * 4 3 2 31 31 H 1.07995 * 120.03472 * 179.74792 * 5 4 3 32 32 H 0.97004 * 119.99635 * 180.02562 * 13 12 10 33 33 H 1.07994 * 120.00184 * 359.97438 * 19 18 8 34 34 H 1.07999 * 120.00118 * 180.23099 * 20 19 18 35 35 H 1.07995 * 120.00076 * 179.82979 * 21 20 19 36 36 H 1.08001 * 119.99371 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.99654 * 180.02562 * 23 22 21 38 38 H 1.09003 * 109.46823 * 269.97414 * 25 24 2 39 39 H 1.08997 * 109.46929 * 29.97385 * 25 24 2 40 40 H 1.08995 * 109.47319 * 149.97836 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0057 5 6 4.2752 0.0072 -0.0001 6 6 3.5846 -1.1959 -0.0006 7 8 4.2658 -2.3718 -0.0015 8 6 5.6885 -2.2972 -0.1125 9 1 5.9597 -1.4552 -0.7492 10 6 6.2898 -2.1063 1.2561 11 1 6.0595 -2.8023 2.0491 12 6 7.1340 -1.0428 1.4960 13 7 7.5132 -0.7685 2.7250 14 14 7.7389 0.0083 0.0752 15 1 6.8123 1.1515 -0.1244 16 1 9.0983 0.5209 0.3824 17 1 7.7869 -0.8118 -1.1619 18 6 6.2127 -3.5739 -0.7177 19 6 5.6506 -4.7871 -0.3666 20 6 6.1289 -5.9578 -0.9248 21 6 7.1746 -5.9161 -1.8279 22 6 7.7402 -4.7034 -2.1750 23 6 7.2593 -3.5324 -1.6198 24 6 2.1971 -1.1965 -0.0005 25 6 1.4436 -2.5016 -0.0017 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8897 -0.5141 29 1 1.6565 2.1325 0.0004 30 1 4.1176 2.1382 0.0102 31 1 5.3552 0.0102 0.0003 32 1 8.1068 -0.0201 2.8937 33 1 4.8361 -4.8200 0.3418 34 1 5.6873 -6.9053 -0.6533 35 1 7.5501 -6.8310 -2.2619 36 1 8.5575 -4.6710 -2.8803 37 1 7.7009 -2.5849 -1.8913 38 1 1.2619 -2.8172 1.0257 39 1 0.4912 -2.3708 -0.5154 40 1 2.0326 -3.2608 -0.5161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = 8.088691 kcal Electronic energy + Delta-G solvation = -21939.905620 eV Core-core repulsion = 18877.605330 eV Total energy + Delta-G solvation = -3062.300289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71402 -38.56512 -36.83024 -33.24712 -32.76899 -31.59576 -30.40773 -30.17737 -27.50900 -26.84857 -25.78913 -23.30217 -22.08621 -21.26916 -20.76782 -19.60047 -17.51547 -16.83017 -16.44700 -15.53263 -15.18318 -14.86679 -14.40098 -14.14127 -14.04433 -13.42938 -13.13961 -13.06455 -12.90110 -12.78743 -12.61911 -12.38348 -12.15905 -11.99418 -11.74151 -11.47158 -11.22828 -11.09688 -10.95076 -10.65635 -10.53827 -10.16177 -9.95502 -9.75875 -9.40915 -8.89730 -8.33683 -8.06290 -8.01071 -7.28099 -6.41652 -4.43580 1.89236 1.96796 2.00763 2.11922 3.00301 3.07010 3.13057 4.05971 4.09855 4.34238 4.47880 4.96359 5.23658 5.33241 5.43457 5.45661 5.47748 5.57593 5.63530 5.72280 5.77276 5.86318 5.93871 6.03803 6.06507 6.15796 6.17175 6.21663 6.28631 6.31028 6.38938 6.58192 6.65870 6.75282 7.01597 7.03573 7.07165 7.09749 7.15860 7.22649 7.31512 7.51107 7.60769 8.10281 8.40184 8.73630 9.18265 10.70050 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.007283 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.918832 B = 3843.844869 C = 5169.698928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.061 4.061 3 C -0.174 4.174 4 C -0.086 4.086 5 C -0.208 4.208 6 C 0.172 3.828 7 O -0.316 6.316 8 C 0.208 3.792 9 H 0.045 0.955 10 C -0.528 4.528 11 H 0.087 0.913 12 C 0.087 3.913 13 N -0.867 5.867 14 Si 0.849 3.151 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.254 1.254 18 C -0.035 4.035 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.139 4.139 25 C -0.099 4.099 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.271 0.729 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -1.579 -8.208 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.104 4.104 5 C -0.226 4.226 6 C 0.124 3.876 7 O -0.229 6.229 8 C 0.154 3.846 9 H 0.062 0.938 10 C -0.565 4.565 11 H 0.105 0.895 12 C -0.119 4.119 13 N -0.503 5.503 14 Si 0.676 3.324 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.179 1.179 18 C -0.036 4.036 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.161 4.161 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.156 4.156 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.410 -1.675 -8.058 11.074 hybrid contribution 0.959 0.926 -0.384 1.388 sum -6.450 -0.748 -8.442 10.650 Atomic orbital electron populations 1.20786 0.91680 1.02248 1.01984 1.19397 0.95234 0.92082 0.99357 1.20665 0.93928 0.96855 1.07794 1.20832 0.94033 0.97295 0.98245 1.21634 1.01356 0.92264 1.07365 1.18724 0.90652 0.85740 0.92458 1.86034 1.23090 1.27652 1.86121 1.19413 0.76618 0.91741 0.96840 0.93768 1.21168 1.28592 1.12436 0.94274 0.89539 1.25037 0.95422 0.96117 0.95367 1.69875 1.33035 1.28386 1.18975 0.87467 0.79416 0.81709 0.83794 1.18736 1.20431 1.17911 1.20008 0.95126 0.95504 0.92933 1.20954 0.99937 0.91586 0.99392 1.21060 0.97437 0.97829 0.97968 1.20926 0.98068 0.97233 0.99906 1.20938 0.99980 0.92634 1.00480 1.21020 0.97628 0.98389 0.97533 1.19011 0.90687 0.95466 1.08825 1.20569 0.98789 0.94451 1.01771 0.91453 0.92070 0.91369 0.86933 0.86878 0.85039 0.91875 0.85958 0.86845 0.87042 0.86848 0.86486 0.91934 0.92227 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.60 36.01 0.35 -1.01 16 2 C -0.06 -1.01 5.88 -104.64 -0.62 -1.62 16 3 C -0.17 -2.94 9.70 -39.56 -0.38 -3.32 16 4 C -0.09 -1.65 10.04 -39.61 -0.40 -2.05 16 5 C -0.21 -4.63 8.74 -39.43 -0.34 -4.97 16 6 C 0.17 3.77 6.58 -39.21 -0.26 3.52 16 7 O -0.32 -7.30 8.11 -19.43 -0.16 -7.45 16 8 C 0.21 4.96 1.86 -29.04 -0.05 4.90 16 9 H 0.04 1.06 3.53 -51.93 -0.18 0.88 16 10 C -0.53 -14.45 8.70 -34.44 -0.30 -14.75 16 11 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 12 C 0.09 2.38 5.24 -17.82 -0.09 2.29 16 13 N -0.87 -25.22 13.96 55.43 0.77 -24.45 16 14 Si 0.85 19.83 24.74 -169.99 -4.21 15.63 16 15 H -0.26 -5.87 6.49 56.52 0.37 -5.50 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.25 -5.55 4.90 56.52 0.28 -5.27 16 18 C -0.04 -0.77 4.96 -104.62 -0.52 -1.29 16 19 C -0.10 -1.99 9.36 -39.58 -0.37 -2.36 16 20 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 21 C -0.14 -2.27 10.05 -39.58 -0.40 -2.66 16 22 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.13 -2.54 9.67 -39.59 -0.38 -2.92 16 24 C -0.14 -2.61 5.89 -104.47 -0.62 -3.23 16 25 C -0.10 -1.56 9.38 36.01 0.34 -1.22 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 29 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.13 3.11 1.58 -52.49 -0.08 3.03 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.12 2.42 7.74 -52.49 -0.41 2.01 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.30 6.23 -52.49 -0.33 1.97 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.76 5.94 -51.93 -0.31 0.45 16 40 H 0.07 1.10 7.53 -51.93 -0.39 0.71 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -29.45 320.57 -8.71 -38.16 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.10 Total: 8.93 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -4.84 Total: -35.64 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.77 Total: -24.45 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.16 Total: -7.45 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.21 Total: 15.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.45 -8.71 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.246 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds