Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47260 * 2 1 4 4 C 1.38269 * 119.94011 * 89.99806 * 3 2 1 5 5 C 1.38150 * 120.04830 * 179.72892 * 4 3 2 6 6 C 1.38729 * 119.94926 * 0.27105 * 5 4 3 7 7 O 1.35895 * 120.05516 * 179.97438 * 6 5 4 8 8 C 1.42897 * 117.00105 * 5.76085 * 7 6 5 9 9 H 1.08998 * 109.47328 * 33.87723 * 8 7 6 10 10 C 1.50702 * 109.47148 * 273.87641 * 8 7 6 11 11 H 1.07998 * 120.00128 * 330.64131 * 10 8 7 12 12 C 1.37875 * 119.99646 * 150.64268 * 10 8 7 13 13 N 1.31513 * 120.00228 * 180.27130 * 12 10 8 14 14 Si 1.86806 * 120.00310 * 0.27206 * 12 10 8 15 15 H 1.48497 * 109.47119 * 87.61441 * 14 12 10 16 16 H 1.48500 * 109.47164 * 207.61921 * 14 12 10 17 17 H 1.48494 * 109.46799 * 327.61922 * 14 12 10 18 18 C 1.50705 * 109.46966 * 153.87919 * 8 7 6 19 19 C 1.38237 * 120.00090 * 38.59895 * 18 8 7 20 20 C 1.38231 * 119.99725 * 179.78668 * 19 18 8 21 21 C 1.38235 * 120.00296 * 0.44927 * 20 19 18 22 22 C 1.38233 * 119.99819 * 359.81185 * 21 20 19 23 23 C 1.38229 * 120.00260 * 359.97255 * 22 21 20 24 24 C 1.38730 * 119.88737 * 0.02562 * 6 5 4 25 25 C 1.38151 * 119.94306 * 359.97438 * 24 6 5 26 26 H 1.09004 * 109.47193 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47123 * 299.99847 * 1 2 3 28 28 H 1.09004 * 109.47231 * 60.00302 * 1 2 3 29 29 H 1.09006 * 109.47399 * 239.99879 * 2 1 3 30 30 H 1.09008 * 109.47558 * 120.00067 * 2 1 3 31 31 H 1.07994 * 119.97644 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.01930 * 180.25773 * 5 4 3 33 33 H 0.96992 * 120.00762 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.99970 * 0.02562 * 19 18 8 35 35 H 1.08002 * 119.99644 * 180.27819 * 20 19 18 36 36 H 1.08002 * 120.00478 * 179.82830 * 21 20 19 37 37 H 1.08007 * 119.99931 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.00747 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.02929 * 180.02562 * 24 6 5 40 40 H 1.08005 * 119.96956 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1982 5 6 2.7282 3.3720 1.2008 6 6 2.9599 4.0271 0.0001 7 8 3.4176 5.3067 0.0001 8 6 3.7590 5.8735 1.2667 9 1 4.1636 5.0966 1.9153 10 6 2.5267 6.4657 1.9005 11 1 1.7311 6.8495 1.2792 12 6 2.4150 6.5174 3.2738 13 7 1.3373 7.0293 3.8271 14 14 3.7944 5.8605 4.3486 15 1 4.7909 6.9353 4.5870 16 1 3.2362 5.4059 5.6475 17 1 4.4526 4.7179 3.6657 18 6 4.7919 6.9535 1.0717 19 6 4.7115 7.7978 -0.0199 20 6 5.6565 8.7912 -0.1963 21 6 6.6871 8.9343 0.7137 22 6 6.7706 8.0865 1.8024 23 6 5.8231 7.0960 1.9813 24 6 2.7224 3.3742 -1.2007 25 6 2.2566 2.0736 -1.1980 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0823 1.5610 2.1326 32 1 2.9117 3.8784 2.1369 33 1 1.2584 7.0654 4.7931 34 1 3.9082 7.6839 -0.7327 35 1 5.5911 9.4538 -1.0467 36 1 7.4270 9.7086 0.5744 37 1 7.5756 8.1985 2.5136 38 1 5.8880 6.4338 2.8320 39 1 2.9024 3.8818 -2.1368 40 1 2.0720 1.5647 -2.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = 4.024042 kcal Electronic energy + Delta-G solvation = -21482.231476 eV Core-core repulsion = 18419.754930 eV Total energy + Delta-G solvation = -3062.476546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63315 -38.55620 -37.00839 -33.54147 -32.84888 -31.25859 -30.43874 -30.31845 -28.16919 -27.31561 -23.72693 -22.88057 -22.31361 -22.01463 -20.67804 -19.84542 -17.50115 -17.20984 -16.45858 -15.40839 -15.13168 -14.99128 -14.41221 -14.21599 -13.86665 -13.64731 -13.39024 -13.06176 -13.05003 -12.99216 -12.66982 -12.59282 -12.25873 -12.00215 -11.78090 -11.34442 -10.97762 -10.96099 -10.90373 -10.65044 -10.47858 -10.38772 -9.94200 -9.76993 -9.46928 -8.89392 -8.44818 -8.32509 -8.00213 -7.33004 -6.36386 -4.39512 1.89828 1.95984 2.00773 2.02554 3.05335 3.09756 3.16663 4.08614 4.12505 4.31515 4.46904 4.95512 5.07987 5.13464 5.43007 5.43599 5.45705 5.49920 5.53660 5.61336 5.74847 5.79840 5.89996 5.91357 5.98839 6.08120 6.11578 6.21409 6.27825 6.33354 6.37386 6.55367 6.58651 6.65616 6.85174 7.00247 7.03370 7.10078 7.13832 7.19545 7.29939 7.44204 7.60893 8.08105 8.36315 8.75417 9.21545 10.75477 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.005610 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.026489 B = 4990.266939 C = 5938.042067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.142 4.142 4 C -0.082 4.082 5 C -0.191 4.191 6 C 0.159 3.841 7 O -0.313 6.313 8 C 0.206 3.794 9 H 0.050 0.950 10 C -0.528 4.528 11 H 0.088 0.912 12 C 0.086 3.914 13 N -0.876 5.876 14 Si 0.852 3.148 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.258 1.258 18 C -0.040 4.040 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.168 4.168 25 C -0.085 4.085 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.270 0.730 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -7.474 -6.089 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.143 4.143 4 C -0.100 4.100 5 C -0.210 4.210 6 C 0.112 3.888 7 O -0.226 6.226 8 C 0.152 3.848 9 H 0.067 0.933 10 C -0.565 4.565 11 H 0.106 0.894 12 C -0.119 4.119 13 N -0.512 5.512 14 Si 0.679 3.321 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.183 1.183 18 C -0.041 4.041 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.161 4.161 22 C -0.139 4.139 23 C -0.150 4.150 24 C -0.186 4.186 25 C -0.103 4.103 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.333 -7.269 -6.048 10.856 hybrid contribution 0.512 -0.054 1.128 1.240 sum 5.845 -7.324 -4.920 10.583 Atomic orbital electron populations 1.21770 0.95377 1.00918 1.02362 1.20377 0.95703 0.93125 1.01898 1.19597 1.04981 0.96488 0.93205 1.20772 0.97930 0.94135 0.97148 1.21521 1.04942 0.95890 0.98632 1.18975 0.92251 0.84081 0.93445 1.85937 1.77821 1.23746 1.35108 1.19585 0.93574 0.90642 0.81045 0.93255 1.21211 1.01607 1.41440 0.92211 0.89410 1.24882 0.95224 0.94242 0.97565 1.69848 1.26668 1.43181 1.11501 0.87342 0.83265 0.80561 0.80927 1.18618 1.20692 1.18349 1.20204 0.92510 0.97667 0.93709 1.20919 0.98423 0.94463 0.97691 1.21073 0.95487 0.98378 0.99250 1.20916 0.99190 1.00082 0.95910 1.20914 0.98930 0.96064 0.97959 1.20901 0.94942 0.99716 0.99458 1.20346 1.06864 0.95236 0.96194 1.20615 0.98850 0.93795 0.97085 0.93066 0.92520 0.92674 0.91768 0.91740 0.86718 0.84639 0.91963 0.85906 0.86767 0.86960 0.86850 0.87285 0.85973 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.07 -0.88 6.06 -27.88 -0.17 -1.05 16 3 C -0.14 -2.20 5.13 -104.60 -0.54 -2.74 16 4 C -0.08 -1.43 9.69 -39.60 -0.38 -1.82 16 5 C -0.19 -3.97 8.73 -39.43 -0.34 -4.32 16 6 C 0.16 3.34 6.60 -39.22 -0.26 3.08 16 7 O -0.31 -7.13 9.06 -19.41 -0.18 -7.30 16 8 C 0.21 4.89 1.54 -29.03 -0.04 4.85 16 9 H 0.05 1.18 3.35 -51.93 -0.17 1.00 16 10 C -0.53 -14.35 8.38 -34.44 -0.29 -14.64 16 11 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 12 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 13 N -0.88 -25.58 13.96 55.43 0.77 -24.81 16 14 Si 0.85 19.98 23.61 -169.99 -4.01 15.96 16 15 H -0.26 -5.95 6.78 56.52 0.38 -5.57 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.26 -5.68 5.89 56.52 0.33 -5.34 16 18 C -0.04 -0.89 4.89 -104.62 -0.51 -1.40 16 19 C -0.10 -1.95 9.36 -39.58 -0.37 -2.32 16 20 C -0.12 -2.13 10.05 -39.58 -0.40 -2.52 16 21 C -0.14 -2.33 10.05 -39.58 -0.40 -2.73 16 22 C -0.12 -2.12 10.05 -39.59 -0.40 -2.52 16 23 C -0.13 -2.71 8.62 -39.58 -0.34 -3.05 16 24 C -0.17 -2.97 9.99 -39.43 -0.39 -3.37 16 25 C -0.09 -1.32 9.69 -39.61 -0.38 -1.70 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.06 0.72 8.08 -51.92 -0.42 0.30 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.14 3.06 4.77 -52.49 -0.25 2.81 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.12 2.45 7.74 -52.49 -0.41 2.05 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.11 2.21 5.27 -52.49 -0.28 1.94 16 39 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -29.18 327.04 -8.83 -38.01 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.40 Total: 8.48 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: -4.95 Total: -35.27 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.77 Total: -24.81 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.18 Total: -7.30 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.01 Total: 15.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.18 -8.83 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.037 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds