Wall clock time and date at job start Tue Mar 31 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38288 * 119.97198 * 2 1 4 4 C 1.38249 * 120.11043 * 179.97438 * 3 2 1 5 5 C 1.38165 * 120.05619 * 359.76951 * 4 3 2 6 6 C 1.50701 * 120.02978 * 180.25514 * 5 4 3 7 7 C 1.38709 * 119.94341 * 0.52810 * 5 4 3 8 8 O 1.35900 * 120.05590 * 179.72319 * 7 5 4 9 9 C 1.42908 * 116.99861 * 174.20095 * 8 7 5 10 10 H 1.08996 * 109.47130 * 324.55269 * 9 8 7 11 11 C 1.50693 * 109.46982 * 84.55622 * 9 8 7 12 12 H 1.08002 * 120.00474 * 29.52922 * 11 9 8 13 13 C 1.37879 * 119.99963 * 209.52743 * 11 9 8 14 14 N 1.31509 * 119.99806 * 1.79325 * 13 11 9 15 15 Si 1.86803 * 120.00185 * 181.79575 * 13 11 9 16 16 H 1.48496 * 109.46952 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.46871 * 299.99866 * 15 13 11 18 18 H 1.48502 * 109.46781 * 59.99863 * 15 13 11 19 19 C 1.50704 * 109.46641 * 204.55570 * 9 8 7 20 20 C 1.38228 * 119.99973 * 320.98899 * 19 9 8 21 21 C 1.38241 * 119.99539 * 179.81263 * 20 19 9 22 22 C 1.38231 * 120.00035 * 0.39530 * 21 20 19 23 23 C 1.38236 * 120.00121 * 359.86100 * 22 21 20 24 24 C 1.38235 * 119.99390 * 141.26415 * 19 9 8 25 25 C 1.38122 * 119.97654 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47325 * 269.97478 * 1 2 3 27 27 H 1.09004 * 109.47692 * 29.97489 * 1 2 3 28 28 H 1.08999 * 109.47496 * 149.97437 * 1 2 3 29 29 H 1.07997 * 119.94589 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.96911 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47250 * 270.27912 * 6 5 4 32 32 H 1.09000 * 109.46755 * 30.27472 * 6 5 4 33 33 H 1.09002 * 109.47212 * 150.27150 * 6 5 4 34 34 H 0.97004 * 120.00381 * 356.22956 * 14 13 11 35 35 H 1.07992 * 120.00266 * 0.02562 * 20 19 9 36 36 H 1.08000 * 119.99760 * 180.23603 * 21 20 19 37 37 H 1.08002 * 120.00270 * 179.83404 * 22 21 20 38 38 H 1.07998 * 120.00319 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00324 * 359.97438 * 24 19 9 40 40 H 1.08004 * 120.02199 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2751 0.0071 0.0059 6 6 5.7821 0.0115 0.0123 7 6 3.5845 -1.1958 -0.0004 8 8 4.2658 -2.3717 -0.0008 9 6 3.4943 -3.5685 0.1213 10 1 2.6465 -3.3884 0.7823 11 6 2.9924 -3.9834 -1.2377 12 1 3.5635 -3.7405 -2.1216 13 6 1.8042 -4.6733 -1.3527 14 7 1.0913 -4.9383 -0.2799 15 14 1.2070 -5.2315 -3.0324 16 1 -0.0857 -5.9473 -2.8854 17 1 1.0212 -4.0481 -3.9100 18 1 2.2113 -6.1433 -3.6368 19 6 4.3549 -4.6644 0.6952 20 6 5.6751 -4.7833 0.3034 21 6 6.4655 -5.7863 0.8329 22 6 5.9333 -6.6753 1.7479 23 6 4.6115 -6.5596 2.1357 24 6 3.8222 -5.5543 1.6092 25 6 2.1970 -1.1965 -0.0005 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6564 2.1325 0.0004 30 1 4.1175 2.1382 0.0010 31 1 6.1498 0.0155 -1.0138 32 1 6.1406 0.9011 0.5301 33 1 6.1459 -0.8789 0.5252 34 1 1.4272 -4.6971 0.5976 35 1 6.0900 -4.0906 -0.4137 36 1 7.4981 -5.8769 0.5296 37 1 6.5501 -7.4606 2.1595 38 1 4.1956 -7.2544 2.8503 39 1 2.7896 -5.4638 1.9123 40 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:07 Heat of formation + Delta-G solvation = -6.620890 kcal Electronic energy + Delta-G solvation = -21915.319122 eV Core-core repulsion = 18852.380977 eV Total energy + Delta-G solvation = -3062.938144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66152 -38.47026 -36.72067 -33.80878 -32.91126 -30.85517 -30.20009 -29.22389 -28.68327 -26.59749 -24.36135 -23.54404 -22.07657 -21.74435 -20.39458 -20.11834 -17.50194 -16.54376 -16.28071 -15.35136 -14.94345 -14.64003 -14.22916 -13.97850 -13.87552 -13.53572 -13.27815 -13.00709 -12.86219 -12.69296 -12.33907 -12.23300 -12.05371 -12.01594 -11.66152 -11.38278 -11.02257 -10.90865 -10.72833 -10.56222 -10.44054 -10.41758 -10.22758 -9.70283 -9.09473 -8.66625 -8.24247 -8.06601 -7.88054 -7.29894 -6.62822 -4.40915 1.89042 2.07216 2.09762 2.12217 3.33485 3.34167 3.52630 4.17300 4.30820 4.35401 4.60030 5.08789 5.28814 5.32905 5.50777 5.55217 5.60298 5.62323 5.66878 5.75460 5.96224 5.98520 5.99543 6.07615 6.13316 6.19045 6.25069 6.30679 6.34581 6.44341 6.49882 6.68744 6.74770 6.77638 6.95522 7.09697 7.12000 7.16923 7.25427 7.39216 7.55638 7.62263 7.73117 8.06116 8.48922 8.53258 9.29606 10.69963 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.007407 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.953660 B = 3779.371471 C = 5178.445625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.060 4.060 3 C -0.174 4.174 4 C -0.090 4.090 5 C -0.146 4.146 6 C -0.096 4.096 7 C 0.165 3.835 8 O -0.316 6.316 9 C 0.225 3.775 10 H 0.046 0.954 11 C -0.604 4.604 12 H 0.063 0.937 13 C 0.033 3.967 14 N -0.893 5.893 15 Si 1.067 2.933 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.038 4.038 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.189 4.189 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.269 0.731 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 5.619 2.693 7.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.193 4.193 4 C -0.108 4.108 5 C -0.147 4.147 6 C -0.153 4.153 7 C 0.118 3.882 8 O -0.229 6.229 9 C 0.171 3.829 10 H 0.064 0.936 11 C -0.641 4.641 12 H 0.081 0.919 13 C -0.173 4.173 14 N -0.528 5.528 15 Si 0.894 3.106 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.039 4.039 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.164 4.164 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.207 4.207 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.159 4.802 1.909 6.057 hybrid contribution 1.033 0.504 0.641 1.317 sum 4.193 5.306 2.550 7.227 Atomic orbital electron populations 1.20763 0.91750 1.02518 1.01845 1.19679 0.95646 0.92698 0.97965 1.20696 0.93982 0.96909 1.07696 1.20627 0.93884 0.96224 1.00063 1.19181 0.95998 0.90753 1.08772 1.20488 0.91376 1.01857 1.01553 1.18761 0.90375 0.86005 0.93098 1.85916 1.37849 1.12835 1.86313 1.19229 0.88171 0.78208 0.97340 0.93631 1.22194 1.09519 1.40717 0.91635 0.91883 1.25879 0.92791 0.93524 1.05150 1.70892 1.38802 1.44031 0.99124 0.83554 0.76530 0.76800 0.73733 1.20419 1.21017 1.21060 1.20232 0.93831 0.97316 0.92488 1.20886 0.93807 0.97875 0.99585 1.21015 0.99240 0.96108 0.98339 1.20891 0.95625 0.99961 0.99904 1.20950 0.94231 0.98375 1.00566 1.20932 0.99606 0.95825 0.97069 1.21484 0.93619 0.99358 1.06257 0.91639 0.92082 0.91253 0.87018 0.86525 0.92159 0.92664 0.91468 0.91862 0.86430 0.87102 0.87217 0.86965 0.86444 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 36.00 0.36 -1.38 16 2 C -0.06 -1.10 5.88 -104.65 -0.62 -1.72 16 3 C -0.17 -2.88 9.70 -39.56 -0.38 -3.26 16 4 C -0.09 -1.47 9.70 -39.60 -0.38 -1.86 16 5 C -0.15 -2.72 5.89 -104.47 -0.62 -3.34 16 6 C -0.10 -1.52 9.79 36.01 0.35 -1.17 16 7 C 0.16 3.58 6.56 -39.22 -0.26 3.33 16 8 O -0.32 -7.35 8.12 -19.42 -0.16 -7.51 16 9 C 0.22 5.48 1.67 -29.04 -0.05 5.43 16 10 H 0.05 1.17 4.60 -51.93 -0.24 0.93 16 11 C -0.60 -15.98 7.69 -34.44 -0.26 -16.25 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.03 0.87 5.44 -17.82 -0.10 0.77 16 14 N -0.89 -24.38 13.62 55.43 0.75 -23.62 16 15 Si 1.07 24.15 29.90 -169.99 -5.08 19.07 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.04 -0.87 4.96 -104.62 -0.52 -1.39 16 20 C -0.10 -2.15 9.36 -39.58 -0.37 -2.52 16 21 C -0.13 -2.31 10.05 -39.58 -0.40 -2.70 16 22 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 23 C -0.12 -2.26 10.05 -39.58 -0.40 -2.66 16 24 C -0.12 -2.47 9.46 -39.58 -0.37 -2.85 16 25 C -0.19 -4.09 8.35 -39.43 -0.33 -4.42 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.07 1.12 7.53 -51.93 -0.39 0.73 16 34 H 0.27 7.22 5.11 -40.82 -0.21 7.01 16 35 H 0.12 2.43 7.75 -52.49 -0.41 2.02 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.12 2.54 6.82 -52.49 -0.36 2.18 16 40 H 0.14 3.46 5.66 -52.48 -0.30 3.16 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -28.33 333.67 -9.52 -37.85 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.33 Total: 8.05 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: -4.74 Total: -38.87 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.75 Total: -23.62 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.16 Total: -7.51 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.33 -9.52 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.232 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds