Wall clock time and date at job start Tue Mar 31 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 119.97475 * 2 1 4 4 C 1.38239 * 120.11627 * 180.02562 * 3 2 1 5 5 C 1.38173 * 120.05212 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.02722 * 179.97438 * 5 4 3 7 7 C 1.38709 * 119.94264 * 359.97438 * 5 4 3 8 8 O 1.35908 * 120.05296 * 180.02562 * 7 5 4 9 9 C 1.42901 * 116.99864 * 185.52883 * 8 7 5 10 10 H 1.09001 * 109.47195 * 35.31319 * 9 8 7 11 11 C 1.50699 * 109.46886 * 275.31934 * 9 8 7 12 12 H 1.08003 * 119.99961 * 330.86725 * 11 9 8 13 13 C 1.37871 * 120.00074 * 150.86795 * 11 9 8 14 14 N 1.31513 * 120.00106 * 4.19536 * 13 11 9 15 15 Si 1.86803 * 120.00165 * 184.19543 * 13 11 9 16 16 H 1.48502 * 109.47133 * 59.99737 * 15 13 11 17 17 H 1.48494 * 109.47118 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47099 * 300.00143 * 15 13 11 19 19 C 1.50696 * 109.47048 * 155.31923 * 9 8 7 20 20 C 1.38235 * 119.99919 * 38.69900 * 19 9 8 21 21 C 1.38238 * 119.99909 * 179.78761 * 20 19 9 22 22 C 1.38241 * 119.99947 * 0.44415 * 21 20 19 23 23 C 1.38238 * 119.99708 * 359.80911 * 22 21 20 24 24 C 1.38229 * 120.00068 * 359.97438 * 23 22 21 25 25 C 1.38120 * 119.97350 * 180.25903 * 2 1 3 26 26 H 1.08997 * 109.47437 * 89.99297 * 1 2 3 27 27 H 1.08991 * 109.47218 * 210.00127 * 1 2 3 28 28 H 1.09007 * 109.47242 * 329.99726 * 1 2 3 29 29 H 1.08001 * 119.94391 * 0.02562 * 3 2 1 30 30 H 1.07994 * 119.97650 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47378 * 270.01746 * 6 5 4 32 32 H 1.09007 * 109.47182 * 30.01879 * 6 5 4 33 33 H 1.09003 * 109.47461 * 150.01877 * 6 5 4 34 34 H 0.96998 * 120.00248 * 180.02562 * 14 13 11 35 35 H 1.07999 * 120.00448 * 0.02562 * 20 19 9 36 36 H 1.08000 * 120.00657 * 180.27776 * 21 20 19 37 37 H 1.07999 * 120.00203 * 179.83580 * 22 21 20 38 38 H 1.07997 * 119.99568 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.99971 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.02535 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 5.7821 0.0115 -0.0017 7 6 3.5845 -1.1958 0.0005 8 8 4.2657 -2.3718 0.0011 9 6 3.4942 -3.5685 -0.1205 10 1 2.6449 -3.3879 -0.7795 11 6 2.9953 -3.9848 1.2392 12 1 3.5651 -3.7369 2.1226 13 6 1.8116 -4.6821 1.3555 14 7 1.1599 -5.0558 0.2761 15 14 1.1335 -5.0959 3.0461 16 1 0.8865 -3.8412 3.8011 17 1 -0.1410 -5.8435 2.8988 18 1 2.1158 -5.9313 3.7825 19 6 4.3537 -4.6638 -0.6973 20 6 5.6766 -4.7789 -0.3132 21 6 6.4638 -5.7863 -0.8390 22 6 5.9305 -6.6730 -1.7557 23 6 4.6090 -6.5546 -2.1437 24 6 3.8207 -5.5500 -1.6146 25 6 2.1970 -1.1965 -0.0054 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6566 2.1325 0.0004 30 1 4.1175 2.1382 -0.0010 31 1 6.1447 0.0124 -1.0296 32 1 6.1433 0.9026 0.5118 33 1 6.1485 -0.8774 0.5120 34 1 0.3269 -5.5461 0.3578 35 1 6.0942 -4.0842 0.4005 36 1 7.4961 -5.8791 -0.5356 37 1 6.5462 -7.4585 -2.1685 38 1 4.1925 -7.2471 -2.8602 39 1 2.7883 -5.4573 -1.9180 40 1 1.6570 -2.1317 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:10 Heat of formation + Delta-G solvation = -5.523193 kcal Electronic energy + Delta-G solvation = -21860.163318 eV Core-core repulsion = 18797.272774 eV Total energy + Delta-G solvation = -3062.890545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.53272 -38.29733 -36.59876 -33.55768 -32.77716 -30.86250 -30.03449 -29.14976 -28.62962 -26.92314 -24.34589 -23.53530 -21.90864 -21.60703 -20.19954 -19.95425 -16.94553 -16.55563 -16.15603 -15.25665 -14.89163 -14.62314 -14.25462 -14.03435 -13.80596 -13.42506 -13.09769 -12.87270 -12.77216 -12.54025 -12.27550 -12.17950 -12.02869 -11.83491 -11.43705 -11.30016 -11.06792 -11.02695 -10.65778 -10.56808 -10.44415 -10.36463 -10.25651 -9.50465 -9.39679 -8.74507 -8.07512 -7.99826 -7.77596 -7.23838 -6.30237 -4.39115 1.95719 2.18460 2.24894 2.26673 3.20345 3.24078 3.28355 4.18316 4.35075 4.42197 4.75552 5.03993 5.34368 5.38688 5.62966 5.66807 5.68510 5.72387 5.77286 5.84773 5.99545 6.03423 6.11714 6.17074 6.26874 6.32924 6.36757 6.39769 6.50108 6.55335 6.73614 6.83256 6.89717 6.97314 7.02894 7.20721 7.26822 7.29210 7.38918 7.54966 7.63307 7.71248 7.82998 7.93105 8.35933 8.83345 9.28778 10.73247 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.007432 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.090898 B = 3766.403332 C = 5189.559057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.062 4.062 3 C -0.176 4.176 4 C -0.091 4.091 5 C -0.147 4.147 6 C -0.096 4.096 7 C 0.167 3.833 8 O -0.321 6.321 9 C 0.233 3.767 10 H 0.065 0.935 11 C -0.530 4.530 12 H 0.067 0.933 13 C 0.074 3.926 14 N -0.879 5.879 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.030 4.030 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.131 4.131 24 C -0.098 4.098 25 C -0.189 4.189 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 5.632 -2.906 7.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.109 4.109 5 C -0.148 4.148 6 C -0.153 4.153 7 C 0.120 3.880 8 O -0.234 6.234 9 C 0.179 3.821 10 H 0.083 0.917 11 C -0.567 4.567 12 H 0.085 0.915 13 C -0.131 4.131 14 N -0.516 5.516 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.166 4.166 23 C -0.149 4.149 24 C -0.117 4.117 25 C -0.207 4.207 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.233 5.467 -2.954 7.005 hybrid contribution -0.703 -0.561 1.026 1.365 sum 2.531 4.906 -1.927 5.847 Atomic orbital electron populations 1.20748 0.91926 1.02309 1.01781 1.19669 0.95528 0.92781 0.98198 1.20675 0.93990 0.96869 1.07928 1.20610 0.93867 0.96213 1.00211 1.19185 0.95958 0.90823 1.08859 1.20486 0.91444 1.01954 1.01389 1.18754 0.90348 0.86062 0.92832 1.85911 1.38235 1.13087 1.86208 1.19194 0.88374 0.77380 0.97146 0.91743 1.21321 1.06389 1.37183 0.91807 0.91518 1.24919 0.96025 0.94758 0.97363 1.69870 1.16658 1.37011 1.28025 0.86528 0.78318 0.78815 0.83845 1.19789 1.20953 1.19912 1.20148 0.93196 0.97316 0.92449 1.20922 0.94067 0.97833 0.99824 1.20962 0.99136 0.96392 0.98748 1.20861 0.95711 0.99991 1.00000 1.20975 0.94248 0.98778 1.00921 1.21017 0.99826 0.94848 0.95960 1.21559 0.93716 0.99492 1.05950 0.91660 0.91429 0.92231 0.87187 0.86664 0.92313 0.92748 0.91320 0.92136 0.86649 0.87422 0.87569 0.87291 0.85533 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 36.00 0.36 -1.34 16 2 C -0.06 -1.13 5.88 -104.65 -0.62 -1.74 16 3 C -0.18 -2.90 9.70 -39.56 -0.38 -3.28 16 4 C -0.09 -1.49 9.70 -39.60 -0.38 -1.87 16 5 C -0.15 -2.73 5.89 -104.47 -0.62 -3.35 16 6 C -0.10 -1.51 9.79 36.00 0.35 -1.16 16 7 C 0.17 3.60 6.56 -39.22 -0.26 3.34 16 8 O -0.32 -7.39 8.11 -19.45 -0.16 -7.55 16 9 C 0.23 5.65 1.83 -29.04 -0.05 5.60 16 10 H 0.06 1.66 5.60 -51.93 -0.29 1.37 16 11 C -0.53 -13.80 7.72 -34.44 -0.27 -14.07 16 12 H 0.07 1.80 7.82 -52.48 -0.41 1.39 16 13 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 14 N -0.88 -22.79 12.93 55.43 0.72 -22.07 16 15 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.03 -0.70 4.96 -104.63 -0.52 -1.22 16 20 C -0.11 -2.27 9.36 -39.58 -0.37 -2.64 16 21 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 22 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 23 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 24 C -0.10 -2.14 9.67 -39.59 -0.38 -2.52 16 25 C -0.19 -4.03 8.36 -39.44 -0.33 -4.36 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 28 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.72 8.09 -51.92 -0.42 0.30 16 33 H 0.07 1.16 7.53 -51.93 -0.39 0.77 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.12 2.38 7.74 -52.49 -0.41 1.98 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.13 2.85 8.04 -52.49 -0.42 2.43 16 40 H 0.15 3.54 5.69 -52.49 -0.30 3.24 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -26.92 338.47 -9.69 -36.61 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.57 Total: 7.93 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -4.75 Total: -35.51 kcal Atomic # 7 Polarization: -22.79 SS G_CDS: 0.72 Total: -22.07 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.16 Total: -7.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.92 -9.69 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.090 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds