Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.94597 * 2 1 4 4 C 1.38129 * 120.05650 * 180.27876 * 3 2 1 5 5 C 1.38758 * 119.94073 * 359.74679 * 4 3 2 6 6 O 1.35898 * 120.05035 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00315 * 354.65396 * 6 5 4 8 8 H 1.09000 * 109.46989 * 324.15565 * 7 6 5 9 9 C 1.50700 * 109.47309 * 84.15587 * 7 6 5 10 10 H 1.07993 * 120.00105 * 240.00204 * 9 7 6 11 11 C 1.37879 * 119.99637 * 59.99702 * 9 7 6 12 12 N 1.31513 * 120.00393 * 0.02562 * 11 9 7 13 13 Si 1.86807 * 119.99722 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47046 * 59.99976 * 13 11 9 15 15 H 1.48497 * 109.47022 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47043 * 300.00201 * 13 11 9 17 17 C 1.50696 * 109.47164 * 204.15526 * 7 6 5 18 18 C 1.38239 * 120.00118 * 324.73042 * 17 7 6 19 19 C 1.38241 * 120.00131 * 179.81234 * 18 17 7 20 20 C 1.38243 * 119.99632 * 0.39164 * 19 18 17 21 21 C 1.38232 * 119.99981 * 359.85912 * 20 19 18 22 22 C 1.38230 * 120.00229 * 359.95635 * 21 20 19 23 23 C 1.38713 * 119.88936 * 0.02562 * 5 4 3 24 24 C 1.38167 * 119.94292 * 359.97438 * 23 5 4 25 25 C 1.50699 * 119.96804 * 179.97438 * 24 23 5 26 26 H 1.09000 * 109.46738 * 270.23180 * 1 2 3 27 27 H 1.09000 * 109.47408 * 30.22533 * 1 2 3 28 28 H 1.09000 * 109.47434 * 150.23438 * 1 2 3 29 29 H 1.08003 * 119.97300 * 0.02562 * 3 2 1 30 30 H 1.07993 * 120.02839 * 179.72574 * 4 3 2 31 31 H 0.97000 * 119.99987 * 179.97438 * 12 11 9 32 32 H 1.07997 * 120.00011 * 359.97438 * 18 17 7 33 33 H 1.07993 * 119.99914 * 180.22678 * 19 18 17 34 34 H 1.08001 * 119.99436 * 179.83781 * 20 19 18 35 35 H 1.07998 * 119.99805 * 179.97438 * 21 20 19 36 36 H 1.08006 * 119.99959 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.02498 * 180.02562 * 23 5 4 38 38 H 1.08994 * 109.47428 * 90.00179 * 25 24 23 39 39 H 1.08996 * 109.47248 * 329.99835 * 25 24 23 40 40 H 1.09000 * 109.46843 * 210.00338 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 -0.0058 5 6 4.2734 -0.0001 -0.0063 6 8 5.6324 -0.0001 -0.0126 7 6 6.2806 1.2673 -0.1370 8 1 5.7003 1.9086 -0.8003 9 6 6.3860 1.9130 1.2205 10 1 5.9188 2.8697 1.4012 11 6 7.0790 1.2823 2.2320 12 7 7.6484 0.1174 2.0119 13 14 7.2091 2.0824 3.9150 14 1 5.8486 2.2749 4.4780 15 1 8.0003 1.2090 4.8185 16 1 7.8824 3.3997 3.7861 17 6 7.6611 1.0715 -0.7086 18 6 8.3956 -0.0504 -0.3727 19 6 9.6605 -0.2320 -0.9002 20 6 10.1940 0.7124 -1.7572 21 6 9.4616 1.8368 -2.0890 22 6 8.1953 2.0164 -1.5646 23 6 3.5786 -1.2007 -0.0016 24 6 2.1970 -1.1979 0.0042 25 6 1.4416 -2.5019 0.0088 26 1 -0.3633 0.0042 1.0277 27 1 -0.3634 0.8879 -0.5173 28 1 -0.3634 -0.8921 -0.5102 29 1 1.6559 2.1328 0.0004 30 1 4.1172 2.1369 -0.0103 31 1 8.1362 -0.3261 2.7234 32 1 7.9803 -0.7864 0.2997 33 1 10.2328 -1.1103 -0.6406 34 1 11.1833 0.5718 -2.1672 35 1 9.8786 2.5748 -2.7582 36 1 7.6229 2.8948 -1.8242 37 1 4.1173 -2.1368 -0.0016 38 1 1.2637 -2.8152 1.0375 39 1 2.0273 -3.2629 -0.5066 40 1 0.4873 -2.3707 -0.5012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = 9.157330 kcal Electronic energy + Delta-G solvation = -21716.648710 eV Core-core repulsion = 18654.394760 eV Total energy + Delta-G solvation = -3062.253949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.39854 -38.22597 -36.73280 -33.23408 -31.99363 -31.36561 -30.44420 -29.68645 -27.51602 -26.48289 -25.35978 -23.22140 -21.64359 -21.45049 -20.54005 -19.47743 -17.28836 -16.16973 -16.03638 -15.20973 -14.93869 -14.63981 -14.08059 -13.93319 -13.81589 -13.45142 -13.20656 -12.94734 -12.64186 -12.48004 -12.39520 -11.99937 -11.99076 -11.64025 -11.59052 -11.45884 -11.01426 -10.91147 -10.69573 -10.52703 -10.37739 -10.21287 -10.05344 -9.34327 -9.17226 -8.83740 -8.12273 -7.85752 -7.55829 -7.03258 -6.08549 -4.43948 2.01937 2.21275 2.39471 2.55809 3.21068 3.25447 3.28171 4.23868 4.45620 4.47665 4.95470 5.12039 5.26323 5.36924 5.51952 5.61707 5.75667 5.76067 5.76850 5.87926 5.95978 5.99406 6.06481 6.09516 6.16026 6.23794 6.33831 6.46442 6.49691 6.60435 6.78895 6.79807 7.01179 7.04538 7.22854 7.24592 7.28114 7.42715 7.51514 7.63623 7.74114 7.87414 7.97953 8.21177 8.48946 8.87884 9.32831 10.74943 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.005817 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.066397 B = 4812.138825 C = 5673.463511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.159 4.159 3 C -0.081 4.081 4 C -0.206 4.206 5 C 0.175 3.825 6 O -0.295 6.295 7 C 0.240 3.760 8 H 0.033 0.967 9 C -0.545 4.545 10 H 0.066 0.934 11 C 0.084 3.916 12 N -0.846 5.846 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.275 1.275 17 C -0.044 4.044 18 C -0.045 4.045 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.125 4.125 23 C -0.174 4.174 24 C -0.056 4.056 25 C -0.111 4.111 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.266 0.734 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -1.739 -4.629 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.159 4.159 3 C -0.100 4.100 4 C -0.225 4.225 5 C 0.127 3.873 6 O -0.207 6.207 7 C 0.187 3.813 8 H 0.051 0.949 9 C -0.581 4.581 10 H 0.084 0.916 11 C -0.122 4.122 12 N -0.481 5.481 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.200 1.200 17 C -0.044 4.044 18 C -0.064 4.064 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.144 4.144 23 C -0.193 4.193 24 C -0.056 4.056 25 C -0.168 4.168 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.079 -2.039 -4.515 7.842 hybrid contribution 0.402 0.887 1.160 1.514 sum -5.677 -1.152 -3.355 6.694 Atomic orbital electron populations 1.20656 0.92315 1.01643 1.01221 1.19363 0.95124 0.92738 1.08680 1.20701 0.93688 0.96734 0.98840 1.21371 0.94445 0.98451 1.08231 1.19045 0.84723 0.92993 0.90582 1.86243 1.13451 1.36272 1.84701 1.18945 0.86714 0.80420 0.95264 0.94867 1.21333 1.35424 1.06473 0.94846 0.91586 1.25011 0.93475 0.94611 0.99140 1.69791 1.31860 1.14319 1.32104 0.86588 0.78450 0.79423 0.83266 1.19882 1.20901 1.19995 1.19795 0.97207 0.94043 0.93393 1.21878 0.92464 0.98736 0.93350 1.21158 0.97403 0.99106 0.99404 1.20851 0.98981 0.95760 1.00546 1.20703 0.95378 0.98231 1.02372 1.20753 0.96000 0.98992 0.98626 1.20215 0.92750 0.96613 1.09693 1.19329 0.92724 0.94389 0.99133 1.20792 0.99647 0.94492 1.01857 0.92393 0.92606 0.92059 0.87088 0.85083 0.92359 0.81872 0.87870 0.88116 0.87816 0.87654 0.86228 0.91607 0.91962 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.60 36.00 0.35 -0.92 16 2 C -0.16 -2.60 5.88 -104.60 -0.62 -3.22 16 3 C -0.08 -1.43 9.69 -39.60 -0.38 -1.82 16 4 C -0.21 -4.22 8.69 -39.43 -0.34 -4.57 16 5 C 0.18 3.88 6.59 -39.21 -0.26 3.62 16 6 O -0.29 -7.24 8.35 -19.42 -0.16 -7.40 16 7 C 0.24 5.82 2.11 -29.04 -0.06 5.75 16 8 H 0.03 0.77 6.27 -51.93 -0.33 0.44 16 9 C -0.54 -14.09 7.92 -34.44 -0.27 -14.37 16 10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 12 N -0.85 -22.23 8.50 55.43 0.47 -21.75 16 13 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.04 -1.03 4.80 -104.62 -0.50 -1.54 16 18 C -0.05 -1.07 7.46 -39.58 -0.30 -1.36 16 19 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 20 C -0.14 -2.72 10.05 -39.58 -0.40 -3.11 16 21 C -0.15 -2.84 10.05 -39.59 -0.40 -3.23 16 22 C -0.13 -2.65 9.68 -39.58 -0.38 -3.03 16 23 C -0.17 -3.42 9.64 -39.43 -0.38 -3.80 16 24 C -0.06 -0.94 5.88 -104.65 -0.62 -1.56 16 25 C -0.11 -1.44 9.61 36.01 0.35 -1.09 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.06 0.67 5.93 -51.93 -0.31 0.36 16 29 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.13 2.74 5.67 -52.49 -0.30 2.44 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.16 4.14 5.50 -52.49 -0.29 3.86 16 33 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.07 0.72 5.93 -51.93 -0.31 0.42 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -27.48 326.88 -9.79 -37.27 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.30 Total: 7.06 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -4.71 Total: -35.67 kcal Atomic # 7 Polarization: -22.23 SS G_CDS: 0.47 Total: -21.75 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.16 Total: -7.40 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.48 -9.79 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.425 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds