Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38267 * 119.97418 * 2 1 4 4 C 1.38267 * 120.11314 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.97367 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.05614 * 0.02562 * 4 3 2 7 7 C 1.38733 * 119.94305 * 0.02562 * 6 4 3 8 8 O 1.35903 * 120.05336 * 180.02562 * 7 6 4 9 9 C 1.42895 * 117.00057 * 354.56309 * 8 7 6 10 10 H 1.08999 * 109.47267 * 339.08393 * 9 8 7 11 11 C 1.50697 * 109.47105 * 99.09301 * 9 8 7 12 12 H 1.08000 * 120.00608 * 55.36235 * 11 9 8 13 13 C 1.37878 * 119.99604 * 235.36271 * 11 9 8 14 14 N 1.31515 * 120.00196 * 172.20410 * 13 11 9 15 15 Si 1.86803 * 120.00301 * 352.19702 * 13 11 9 16 16 H 1.48501 * 109.46828 * 95.40101 * 15 13 11 17 17 H 1.48491 * 109.47422 * 215.40238 * 15 13 11 18 18 H 1.48499 * 109.47148 * 335.40517 * 15 13 11 19 19 C 1.50707 * 109.47081 * 219.08952 * 9 8 7 20 20 C 1.38237 * 119.99948 * 321.96672 * 19 9 8 21 21 C 1.38227 * 119.99953 * 179.80799 * 20 19 9 22 22 C 1.38240 * 119.99937 * 0.39838 * 21 20 19 23 23 C 1.38228 * 119.99960 * 359.85812 * 22 21 20 24 24 C 1.38229 * 120.00180 * 142.23795 * 19 9 8 25 25 C 1.38156 * 119.97427 * 180.27025 * 2 1 3 26 26 H 1.09007 * 109.47176 * 90.00271 * 1 2 3 27 27 H 1.09003 * 109.47282 * 210.00224 * 1 2 3 28 28 H 1.09001 * 109.47533 * 330.00757 * 1 2 3 29 29 H 1.08001 * 119.94076 * 359.97223 * 3 2 1 30 30 H 1.09000 * 109.47176 * 275.00486 * 5 4 3 31 31 H 1.08999 * 109.47105 * 35.00225 * 5 4 3 32 32 H 1.09001 * 109.47383 * 155.00171 * 5 4 3 33 33 H 1.07999 * 120.02655 * 180.02562 * 6 4 3 34 34 H 0.96998 * 120.00385 * 180.02562 * 14 13 11 35 35 H 1.07999 * 119.99678 * 359.97438 * 20 19 9 36 36 H 1.08003 * 120.00388 * 180.23105 * 21 20 19 37 37 H 1.08003 * 119.99937 * 179.83564 * 22 21 20 38 38 H 1.08003 * 120.00136 * 179.97438 * 23 22 21 39 39 H 1.08007 * 119.99809 * 359.97438 * 24 19 9 40 40 H 1.08003 * 120.02370 * 0.02668 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5083 -0.0001 6 6 4.2752 0.0071 0.0005 7 6 3.5844 -1.1961 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 5.6877 -2.2980 -0.1190 10 1 5.9664 -1.3389 -0.5556 11 6 6.3135 -2.4296 1.2456 12 1 6.0871 -3.2861 1.8633 13 6 7.1752 -1.4565 1.7056 14 7 7.6009 -1.4897 2.9494 15 14 7.7382 -0.0910 0.5619 16 1 6.8715 1.1003 0.7492 17 1 9.1453 0.2668 0.8732 18 1 7.6450 -0.5544 -0.8458 19 6 6.1765 -3.4144 -1.0055 20 6 5.5855 -4.6621 -0.9350 21 6 6.0311 -5.6850 -1.7510 22 6 7.0732 -5.4626 -2.6316 23 6 7.6677 -4.2164 -2.6983 24 6 7.2194 -3.1924 -1.8851 25 6 2.1972 -1.1968 -0.0056 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6563 2.1322 -0.0005 30 1 4.4335 2.8674 -1.0240 31 1 3.7804 3.2427 0.5887 32 1 5.3187 2.3605 0.4347 33 1 5.3552 0.0102 0.0014 34 1 8.2068 -0.8049 3.2732 35 1 4.7738 -4.8369 -0.2444 36 1 5.5670 -6.6588 -1.6986 37 1 7.4232 -6.2625 -3.2673 38 1 8.4821 -4.0427 -3.3860 39 1 7.6838 -2.2186 -1.9374 40 1 1.6571 -2.1321 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = 5.250894 kcal Electronic energy + Delta-G solvation = -21756.032346 eV Core-core repulsion = 18693.609001 eV Total energy + Delta-G solvation = -3062.423345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.69637 -38.55342 -36.90492 -33.33249 -33.01855 -31.52541 -30.35637 -29.93392 -27.60440 -26.91559 -26.17717 -23.29824 -22.10728 -21.29683 -20.69293 -19.67922 -17.54932 -16.73101 -16.48009 -15.48184 -15.40853 -14.96200 -14.30329 -14.05170 -13.86509 -13.39512 -13.22094 -13.07032 -12.98132 -12.87668 -12.81162 -12.63105 -12.29475 -12.15132 -11.76451 -11.49696 -11.36325 -11.21998 -10.82412 -10.73364 -10.55852 -10.24184 -9.95249 -9.72678 -9.37082 -8.87196 -8.33101 -8.15384 -8.00890 -7.38586 -6.41018 -4.43732 1.80806 1.97246 2.01423 2.05004 3.00125 3.05105 3.12235 4.06929 4.08291 4.25075 4.47376 4.98341 5.11088 5.22645 5.43790 5.45141 5.48660 5.58387 5.62476 5.64497 5.74513 5.81077 5.84874 5.87922 5.95572 6.03049 6.12187 6.13734 6.18432 6.26573 6.31548 6.58503 6.61265 6.66901 6.93423 6.99015 7.03383 7.07140 7.13885 7.22721 7.29681 7.44810 7.61511 8.08396 8.41756 8.73696 9.18662 10.70647 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.007005 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.405702 B = 3995.903666 C = 5154.259153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.052 4.052 3 C -0.179 4.179 4 C -0.046 4.046 5 C -0.120 4.120 6 C -0.219 4.219 7 C 0.174 3.826 8 O -0.315 6.315 9 C 0.201 3.799 10 H 0.054 0.946 11 C -0.522 4.522 12 H 0.087 0.913 13 C 0.087 3.913 14 N -0.869 5.869 15 Si 0.849 3.151 16 H -0.258 1.258 17 H -0.278 1.278 18 H -0.256 1.256 19 C -0.040 4.040 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.177 4.177 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.271 0.729 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 2.444 -9.010 11.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.046 4.046 5 C -0.176 4.176 6 C -0.237 4.237 7 C 0.126 3.874 8 O -0.229 6.229 9 C 0.147 3.853 10 H 0.072 0.928 11 C -0.559 4.559 12 H 0.105 0.895 13 C -0.119 4.119 14 N -0.505 5.505 15 Si 0.676 3.324 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.161 4.161 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.195 4.195 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.774 2.319 -8.834 11.371 hybrid contribution 0.830 0.814 -0.284 1.197 sum -5.944 3.133 -9.118 11.326 Atomic orbital electron populations 1.20731 0.91452 1.02423 1.01889 1.19533 0.95356 0.92454 0.97831 1.20554 0.93157 0.97040 1.08937 1.19605 0.93613 0.94502 0.96849 1.20879 1.00496 0.94352 1.01899 1.21340 1.00659 0.92008 1.09730 1.18991 0.91416 0.85747 0.91196 1.86130 1.23505 1.27455 1.85765 1.19601 0.76527 0.93538 0.95616 0.92847 1.21094 1.26886 1.09509 0.98392 0.89544 1.25037 0.95423 0.96821 0.94665 1.69872 1.31892 1.34506 1.14195 0.87428 0.79370 0.83387 0.82181 1.18414 1.20400 1.18080 1.20141 0.95075 0.95950 0.92860 1.20961 0.99939 0.92383 0.98658 1.21060 0.97565 0.98612 0.97049 1.20924 0.97992 0.96883 1.00345 1.20938 0.99969 0.93460 0.99673 1.20990 0.97758 0.99382 0.96377 1.20218 0.91222 0.98024 1.10072 0.91487 0.91653 0.91822 0.86824 0.91420 0.91575 0.91390 0.85589 0.91880 0.85952 0.86837 0.87031 0.86840 0.86607 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 36.00 0.36 -0.92 16 2 C -0.05 -0.83 5.88 -104.64 -0.62 -1.45 16 3 C -0.18 -2.91 9.37 -39.56 -0.37 -3.29 16 4 C -0.05 -0.84 5.88 -104.65 -0.62 -1.45 16 5 C -0.12 -1.85 10.01 36.00 0.36 -1.49 16 6 C -0.22 -4.72 8.62 -39.43 -0.34 -5.06 16 7 C 0.17 3.80 6.68 -39.22 -0.26 3.54 16 8 O -0.32 -7.44 9.01 -19.44 -0.18 -7.61 16 9 C 0.20 4.85 1.94 -29.03 -0.06 4.80 16 10 H 0.05 1.28 2.73 -51.93 -0.14 1.14 16 11 C -0.52 -14.48 9.21 -34.44 -0.32 -14.80 16 12 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 13 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 14 N -0.87 -25.42 13.96 55.43 0.77 -24.65 16 15 Si 0.85 19.81 24.83 -169.99 -4.22 15.59 16 16 H -0.26 -5.71 5.37 56.52 0.30 -5.41 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.26 -5.59 4.92 56.52 0.28 -5.31 16 19 C -0.04 -0.88 4.97 -104.62 -0.52 -1.40 16 20 C -0.10 -2.04 9.36 -39.59 -0.37 -2.41 16 21 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 22 C -0.14 -2.30 10.05 -39.58 -0.40 -2.69 16 23 C -0.12 -2.08 10.05 -39.59 -0.40 -2.48 16 24 C -0.13 -2.55 9.67 -39.59 -0.38 -2.93 16 25 C -0.18 -3.29 9.64 -39.43 -0.38 -3.67 16 26 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.07 1.15 6.64 -51.93 -0.34 0.80 16 33 H 0.13 2.87 2.21 -52.49 -0.12 2.76 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 35 H 0.12 2.46 7.72 -52.49 -0.41 2.05 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.12 2.29 6.51 -52.48 -0.34 1.94 16 40 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -29.80 325.06 -8.87 -38.67 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.35 Total: 9.03 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -4.80 Total: -35.92 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.77 Total: -24.65 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.18 Total: -7.61 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.22 Total: 15.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.80 -8.87 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.926 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds