Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.97549 * 2 1 4 4 C 1.38264 * 120.11577 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.97774 * 179.97438 * 4 3 2 6 6 C 1.38144 * 120.05296 * 359.96883 * 4 3 2 7 7 C 1.38737 * 119.94427 * 0.02562 * 6 4 3 8 8 O 1.35898 * 120.05381 * 180.02562 * 7 6 4 9 9 C 1.42899 * 117.00386 * 7.06928 * 8 7 6 10 10 H 1.09001 * 109.46746 * 37.74273 * 9 8 7 11 11 C 1.50694 * 109.47270 * 277.74103 * 9 8 7 12 12 H 1.08000 * 119.99999 * 126.01845 * 11 9 8 13 13 C 1.37876 * 120.00006 * 306.01580 * 11 9 8 14 14 N 1.31516 * 120.00209 * 355.63409 * 13 11 9 15 15 Si 1.86799 * 119.99804 * 175.63240 * 13 11 9 16 16 H 1.48500 * 109.47309 * 59.99948 * 15 13 11 17 17 H 1.48506 * 109.47200 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47418 * 300.00095 * 15 13 11 19 19 C 1.50699 * 109.47032 * 157.74004 * 9 8 7 20 20 C 1.38232 * 120.00179 * 27.54016 * 19 9 8 21 21 C 1.38241 * 119.99998 * 180.02562 * 20 19 9 22 22 C 1.38225 * 120.00014 * 0.07166 * 21 20 19 23 23 C 1.38235 * 120.00377 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99885 * 207.67469 * 19 9 8 25 25 C 1.38145 * 119.96893 * 180.28307 * 2 1 3 26 26 H 1.09000 * 109.47318 * 89.99428 * 1 2 3 27 27 H 1.09002 * 109.47736 * 210.00287 * 1 2 3 28 28 H 1.09007 * 109.46868 * 329.99949 * 1 2 3 29 29 H 1.08007 * 119.94352 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.46968 * 270.01765 * 5 4 3 31 31 H 1.09008 * 109.46970 * 30.01347 * 5 4 3 32 32 H 1.08998 * 109.47470 * 150.01237 * 5 4 3 33 33 H 1.07997 * 120.03076 * 180.02562 * 6 4 3 34 34 H 0.96995 * 119.99520 * 180.02562 * 14 13 11 35 35 H 1.07997 * 119.99864 * 0.10831 * 20 19 9 36 36 H 1.07999 * 119.99506 * 180.34603 * 21 20 19 37 37 H 1.08007 * 120.00157 * 179.97438 * 22 21 20 38 38 H 1.07994 * 120.00218 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00145 * 359.97438 * 24 19 9 40 40 H 1.08001 * 120.02724 * 359.97056 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2010 -0.0005 5 6 4.3302 2.5082 -0.0011 6 6 4.2752 0.0070 -0.0004 7 6 3.5844 -1.1961 -0.0003 8 8 4.2656 -2.3720 0.0003 9 6 5.6841 -2.3001 0.1576 10 1 5.9313 -1.5103 0.8669 11 6 6.3223 -1.9976 -1.1736 12 1 6.9943 -1.1579 -1.2719 13 6 6.0484 -2.7929 -2.2661 14 7 5.2991 -3.8648 -2.1278 15 14 6.7417 -2.3479 -3.9426 16 1 8.2251 -2.3287 -3.8757 17 1 6.3038 -3.3547 -4.9425 18 1 6.2469 -1.0060 -4.3426 19 6 6.1998 -3.6186 0.6739 20 6 5.5138 -4.7859 0.3954 21 6 5.9866 -5.9954 0.8696 22 6 7.1445 -6.0372 1.6233 23 6 7.8300 -4.8697 1.9026 24 6 7.3573 -3.6603 1.4284 25 6 2.1971 -1.1967 -0.0059 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6564 2.1323 0.0004 30 1 4.5103 2.8233 -1.0289 31 1 3.7392 3.2663 0.5130 32 1 5.2832 2.3807 0.5122 33 1 5.3551 0.0101 -0.0004 34 1 5.1067 -4.4245 -2.8963 35 1 4.6092 -4.7533 -0.1936 36 1 5.4536 -6.9080 0.6473 37 1 7.5137 -6.9820 1.9941 38 1 8.7344 -4.9024 2.4919 39 1 7.8924 -2.7481 1.6475 40 1 1.6570 -2.1320 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = 1.439215 kcal Electronic energy + Delta-G solvation = -21796.026277 eV Core-core repulsion = 18733.437645 eV Total energy + Delta-G solvation = -3062.588632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.36575 -38.20185 -36.60024 -33.13154 -32.91344 -30.90644 -29.96490 -29.55964 -27.20794 -26.74042 -25.90403 -23.33902 -21.66211 -20.91168 -20.52148 -19.62425 -17.15282 -16.11677 -15.98940 -15.18239 -15.08956 -14.86303 -14.01088 -13.88739 -13.64116 -13.28631 -13.11819 -12.88860 -12.77829 -12.39115 -12.35930 -12.20074 -11.99642 -11.75570 -11.59179 -11.32479 -11.00399 -10.85730 -10.77782 -10.52637 -10.34859 -10.25037 -10.06752 -9.42368 -9.22572 -8.76632 -7.95186 -7.90312 -7.58817 -7.12154 -6.12572 -4.37523 2.01663 2.26389 2.37066 2.49345 3.22669 3.27283 3.30071 4.27002 4.46976 4.48134 4.88877 5.14830 5.25392 5.39262 5.62428 5.71383 5.73744 5.77472 5.84979 5.86620 5.95520 5.97172 6.08082 6.13269 6.17867 6.20686 6.28991 6.43790 6.51852 6.58951 6.73883 6.82623 6.97554 7.11317 7.17440 7.23823 7.29786 7.40113 7.53260 7.65184 7.70009 7.84428 7.92042 8.10850 8.50133 8.89201 9.36863 10.81147 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.006259 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.412300 B = 4472.192109 C = 5192.386283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.055 4.055 5 C -0.109 4.109 6 C -0.205 4.205 7 C 0.181 3.819 8 O -0.291 6.291 9 C 0.242 3.758 10 H 0.033 0.967 11 C -0.553 4.553 12 H 0.065 0.935 13 C 0.088 3.912 14 N -0.844 5.844 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.033 4.033 20 C -0.051 4.051 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.126 4.126 25 C -0.181 4.181 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.265 0.735 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 4.325 5.022 7.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.205 4.205 4 C -0.055 4.055 5 C -0.166 4.166 6 C -0.224 4.224 7 C 0.132 3.868 8 O -0.203 6.203 9 C 0.188 3.812 10 H 0.050 0.950 11 C -0.590 4.590 12 H 0.084 0.916 13 C -0.120 4.120 14 N -0.477 5.477 15 Si 0.718 3.282 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.034 4.034 20 C -0.069 4.069 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.144 4.144 25 C -0.199 4.199 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.651 3.940 4.903 7.273 hybrid contribution 0.770 0.185 -1.247 1.477 sum -2.881 4.125 3.657 6.220 Atomic orbital electron populations 1.20713 0.91875 1.02021 1.01792 1.19466 0.95092 0.92587 0.98492 1.20475 0.93342 0.96702 1.09942 1.19612 0.93513 0.94624 0.97771 1.20735 0.99691 0.94314 1.01863 1.21287 1.00911 0.91408 1.08797 1.19007 0.91253 0.86295 0.90224 1.86194 1.23369 1.26243 1.84477 1.18872 0.76355 0.90620 0.95313 0.94960 1.21253 1.30206 1.14308 0.93187 0.91643 1.24957 0.93969 0.93918 0.99173 1.69915 1.34620 1.12777 1.30424 0.86663 0.79482 0.78592 0.83421 1.20038 1.20984 1.19897 1.19873 0.94343 0.96189 0.92983 1.21307 1.00836 0.90513 0.94291 1.21100 0.97199 0.97979 0.99979 1.20828 0.96959 0.97146 1.01517 1.20747 0.99879 0.92933 1.02419 1.20717 0.96985 0.97216 0.99468 1.20203 0.91681 0.97714 1.10341 0.91647 0.91886 0.92108 0.87390 0.91580 0.92235 0.91858 0.84872 0.92497 0.83743 0.87750 0.87967 0.87684 0.87461 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 36.00 0.36 -1.04 16 2 C -0.06 -0.96 5.88 -104.65 -0.62 -1.58 16 3 C -0.19 -3.12 9.35 -39.56 -0.37 -3.49 16 4 C -0.06 -0.98 5.88 -104.65 -0.62 -1.60 16 5 C -0.11 -1.54 10.01 36.00 0.36 -1.18 16 6 C -0.21 -4.26 8.29 -39.43 -0.33 -4.58 16 7 C 0.18 4.03 6.57 -39.21 -0.26 3.78 16 8 O -0.29 -7.15 7.88 -19.42 -0.15 -7.30 16 9 C 0.24 5.85 2.09 -29.04 -0.06 5.79 16 10 H 0.03 0.75 6.54 -51.93 -0.34 0.41 16 11 C -0.55 -14.30 7.59 -34.44 -0.26 -14.56 16 12 H 0.07 1.67 7.82 -52.49 -0.41 1.26 16 13 C 0.09 2.31 5.25 -17.82 -0.09 2.22 16 14 N -0.84 -22.47 9.39 55.43 0.52 -21.95 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.03 -0.78 4.79 -104.62 -0.50 -1.28 16 20 C -0.05 -1.18 7.69 -39.58 -0.30 -1.49 16 21 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.15 -2.72 10.05 -39.59 -0.40 -3.12 16 23 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 24 C -0.13 -2.62 9.71 -39.58 -0.38 -3.01 16 25 C -0.18 -3.59 9.64 -39.43 -0.38 -3.97 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.06 0.68 8.09 -51.92 -0.42 0.26 16 29 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.71 8.09 -51.92 -0.42 0.29 16 32 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.13 2.84 5.61 -52.49 -0.29 2.54 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.14 3.62 6.10 -52.49 -0.32 3.30 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.11 2.05 8.06 -52.48 -0.42 1.62 16 40 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -27.70 332.36 -9.85 -37.55 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.56 Total: 6.46 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -4.64 Total: -35.47 kcal Atomic # 7 Polarization: -22.47 SS G_CDS: 0.52 Total: -21.95 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.15 Total: -7.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.70 -9.85 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.991 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds