Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.47023 * 2 1 4 4 C 1.38283 * 119.97585 * 89.99764 * 3 2 1 5 5 C 1.38243 * 120.11263 * 179.97438 * 4 3 2 6 6 C 1.38170 * 120.05649 * 0.02562 * 5 4 3 7 7 C 1.38712 * 119.93988 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05058 * 179.97438 * 7 6 5 9 9 C 1.42897 * 117.00316 * 354.60138 * 8 7 6 10 10 H 1.09001 * 109.47276 * 324.31010 * 9 8 7 11 11 C 1.50695 * 109.47793 * 84.30937 * 9 8 7 12 12 H 1.07996 * 120.00561 * 240.00914 * 11 9 8 13 13 C 1.37882 * 119.99467 * 59.99754 * 11 9 8 14 14 N 1.31516 * 120.00431 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99701 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47277 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46978 * 120.00482 * 15 13 11 18 18 H 1.48500 * 109.47357 * 240.00153 * 15 13 11 19 19 C 1.50704 * 109.47178 * 204.31583 * 9 8 7 20 20 C 1.38232 * 120.00026 * 145.00022 * 19 9 8 21 21 C 1.38232 * 119.99767 * 179.97438 * 20 19 9 22 22 C 1.38234 * 120.00339 * 359.97438 * 21 20 19 23 23 C 1.38237 * 119.99759 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.99530 * 324.96881 * 19 9 8 25 25 C 1.38128 * 119.96727 * 270.29180 * 3 2 1 26 26 H 1.08995 * 109.47001 * 300.00902 * 1 2 3 27 27 H 1.09000 * 109.46751 * 60.00406 * 1 2 3 28 28 H 1.08996 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46887 * 239.99638 * 2 1 3 30 30 H 1.09000 * 109.46751 * 119.99594 * 2 1 3 31 31 H 1.08000 * 119.94282 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97425 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.02726 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00172 * 179.97438 * 14 13 11 35 35 H 1.08002 * 120.00496 * 359.96953 * 20 19 9 36 36 H 1.08007 * 120.00084 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00293 * 179.72032 * 22 21 20 38 38 H 1.07996 * 119.99989 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.00512 * 0.02562 * 24 19 9 40 40 H 1.08000 * 120.03159 * 0.02954 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2626 2.0722 1.1979 5 6 2.7239 3.3754 1.2012 6 6 2.9556 4.0305 0.0069 7 6 2.7244 3.3796 -1.1960 8 8 2.9510 4.0220 -2.3719 9 6 3.3126 5.4025 -2.2979 10 1 2.7770 5.8748 -1.4744 11 6 4.7968 5.5214 -2.0656 12 1 5.1669 6.0197 -1.1818 13 6 5.6823 4.9937 -2.9813 14 7 5.2317 4.3871 -4.0578 15 14 7.5221 5.1404 -2.6930 16 1 7.7675 5.8609 -1.4179 17 1 8.1210 3.7837 -2.6177 18 1 8.1404 5.8928 -3.8141 19 6 2.9501 6.0868 -3.5908 20 6 2.5097 7.3970 -3.5795 21 6 2.1777 8.0248 -4.7654 22 6 2.2866 7.3426 -5.9628 23 6 2.7279 6.0326 -5.9741 24 6 3.0586 5.4043 -4.7880 25 6 2.2566 2.0733 -1.1966 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0818 1.5620 2.1324 32 1 2.9034 3.8819 2.1380 33 1 3.3163 5.0485 0.0100 34 1 5.8547 4.0162 -4.7021 35 1 2.4250 7.9303 -2.6441 36 1 1.8333 9.0484 -4.7566 37 1 2.0229 7.8316 -6.8889 38 1 2.8126 5.4994 -6.9095 39 1 3.4027 4.3806 -4.7968 40 1 2.0717 1.5659 -2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = 6.755552 kcal Electronic energy + Delta-G solvation = -21659.436651 eV Core-core repulsion = 18597.078553 eV Total energy + Delta-G solvation = -3062.358098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33340 -38.17564 -36.63358 -33.51432 -32.95519 -30.79201 -29.77577 -29.37958 -28.39379 -26.99095 -23.75771 -23.11420 -21.83639 -21.36729 -20.70843 -19.63375 -17.29514 -16.24309 -16.03651 -15.21137 -15.08100 -14.95176 -14.17187 -14.02905 -13.80360 -13.44070 -13.41159 -13.02294 -12.61986 -12.49411 -12.37294 -12.03249 -11.87034 -11.60128 -11.37737 -11.06068 -11.01118 -10.94493 -10.68160 -10.53021 -10.45227 -10.18879 -10.08049 -9.35915 -9.21381 -8.85391 -8.15190 -7.86469 -7.56761 -7.14756 -6.09479 -4.44376 2.00638 2.25242 2.39103 2.55226 3.18329 3.26875 3.29601 4.23623 4.44581 4.49084 4.94636 5.09670 5.14496 5.26284 5.53406 5.57831 5.73990 5.76143 5.80689 5.87081 5.96160 5.97729 6.02645 6.11434 6.18159 6.28715 6.34649 6.43910 6.46914 6.58840 6.76591 6.79068 7.00629 7.08766 7.20351 7.22351 7.26287 7.41982 7.51183 7.62484 7.73683 7.86626 7.97246 8.20461 8.48599 8.87067 9.32450 10.74375 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.005905 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.150375 B = 4740.970098 C = 5709.397626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.053 4.053 4 C -0.185 4.185 5 C -0.084 4.084 6 C -0.210 4.210 7 C 0.178 3.822 8 O -0.295 6.295 9 C 0.239 3.761 10 H 0.034 0.966 11 C -0.543 4.543 12 H 0.067 0.933 13 C 0.084 3.916 14 N -0.846 5.846 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.044 4.044 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.045 4.045 25 C -0.174 4.174 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.265 0.735 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.163 0.837 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -2.937 3.802 8.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.053 4.053 4 C -0.204 4.204 5 C -0.102 4.102 6 C -0.228 4.228 7 C 0.129 3.871 8 O -0.206 6.206 9 C 0.186 3.814 10 H 0.052 0.948 11 C -0.579 4.579 12 H 0.085 0.915 13 C -0.123 4.123 14 N -0.481 5.481 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.044 4.044 20 C -0.144 4.144 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.064 4.064 25 C -0.192 4.192 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.180 0.820 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.403 -3.086 3.423 7.889 hybrid contribution 1.387 0.471 0.151 1.473 sum -5.016 -2.615 3.575 6.691 Atomic orbital electron populations 1.21732 0.95135 1.01053 1.02261 1.20481 0.95848 0.93219 1.02283 1.19468 0.97993 0.95195 0.92626 1.20603 1.07351 0.95747 0.96688 1.20822 0.97731 0.94504 0.97167 1.21390 1.07302 1.02071 0.92080 1.19058 0.89982 0.91656 0.86406 1.86248 1.80506 1.27607 1.26287 1.18967 0.94693 0.76802 0.90962 0.94839 1.21404 0.89833 1.38850 1.07845 0.91479 1.25018 0.99402 0.93679 0.94173 1.69820 1.33970 1.34425 1.09848 0.86477 0.84662 0.78088 0.78529 1.19516 1.20615 1.20666 1.19790 0.95076 0.93473 0.96078 1.20751 1.01230 0.95087 0.97317 1.20707 1.04145 0.98908 0.92908 1.20850 1.02944 0.95492 0.96853 1.21151 1.02376 0.95140 0.98349 1.21850 0.91054 1.03348 0.90157 1.20224 1.07471 0.93779 0.97762 0.92723 0.92453 0.92925 0.91302 0.91510 0.87398 0.87075 0.85113 0.92477 0.87642 0.87810 0.88112 0.87871 0.81953 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 37.16 0.37 -1.29 16 2 C -0.08 -1.05 6.06 -27.88 -0.17 -1.22 16 3 C -0.05 -0.88 5.13 -104.65 -0.54 -1.41 16 4 C -0.19 -3.01 9.70 -39.56 -0.38 -3.39 16 5 C -0.08 -1.46 10.04 -39.60 -0.40 -1.85 16 6 C -0.21 -4.25 8.69 -39.43 -0.34 -4.59 16 7 C 0.18 3.90 6.59 -39.22 -0.26 3.64 16 8 O -0.29 -7.19 8.34 -19.43 -0.16 -7.36 16 9 C 0.24 5.77 2.11 -29.04 -0.06 5.71 16 10 H 0.03 0.77 6.26 -51.93 -0.33 0.44 16 11 C -0.54 -14.00 7.93 -34.44 -0.27 -14.27 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.08 2.18 5.24 -17.82 -0.09 2.09 16 14 N -0.85 -22.16 8.53 55.43 0.47 -21.69 16 15 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.04 -1.02 4.80 -104.62 -0.50 -1.53 16 20 C -0.13 -2.64 9.68 -39.59 -0.38 -3.02 16 21 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 24 C -0.05 -1.06 7.45 -39.58 -0.30 -1.35 16 25 C -0.17 -3.38 9.64 -39.43 -0.38 -3.76 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.13 2.71 5.68 -52.49 -0.30 2.41 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.16 4.11 5.53 -52.49 -0.29 3.82 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -27.18 331.43 -10.14 -37.32 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.53 Total: 7.31 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: -4.90 Total: -36.10 kcal Atomic # 7 Polarization: -22.16 SS G_CDS: 0.47 Total: -21.69 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.16 Total: -7.36 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.18 -10.14 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.079 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds