Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46830 * 2 1 4 4 C 1.38290 * 119.96868 * 269.71600 * 3 2 1 5 5 C 1.38245 * 120.11249 * 180.28063 * 4 3 2 6 6 C 1.38173 * 120.05208 * 359.97438 * 5 4 3 7 7 C 1.38712 * 119.94489 * 0.02562 * 6 5 4 8 8 O 1.35899 * 120.05367 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99876 * 4.39881 * 8 7 6 10 10 H 1.08994 * 109.47318 * 39.33833 * 9 8 7 11 11 C 1.50697 * 109.46820 * 279.33392 * 9 8 7 12 12 H 1.08008 * 119.99537 * 125.50156 * 11 9 8 13 13 C 1.37871 * 120.00548 * 305.50298 * 11 9 8 14 14 N 1.31515 * 119.99696 * 9.43646 * 13 11 9 15 15 Si 1.86796 * 120.00122 * 189.43132 * 13 11 9 16 16 H 1.48497 * 109.47486 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47145 * 120.00244 * 15 13 11 18 18 H 1.48508 * 109.47347 * 240.00150 * 15 13 11 19 19 C 1.50700 * 109.46635 * 159.33926 * 9 8 7 20 20 C 1.38236 * 120.00304 * 31.19837 * 19 9 8 21 21 C 1.38239 * 119.99887 * 179.80675 * 20 19 9 22 22 C 1.38232 * 120.00060 * 0.39612 * 21 20 19 23 23 C 1.38236 * 120.00132 * 359.85941 * 22 21 20 24 24 C 1.38237 * 119.99981 * 359.95036 * 23 22 21 25 25 C 1.38120 * 119.97485 * 89.99866 * 3 2 1 26 26 H 1.08998 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47376 * 300.00417 * 1 2 3 28 28 H 1.09001 * 109.46551 * 60.00399 * 1 2 3 29 29 H 1.09002 * 109.47163 * 239.99639 * 2 1 3 30 30 H 1.09001 * 109.46551 * 119.99601 * 2 1 3 31 31 H 1.08000 * 119.94341 * 0.28243 * 4 3 2 32 32 H 1.07992 * 119.97148 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.02269 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00053 * 179.97438 * 14 13 11 35 35 H 1.07994 * 119.99960 * 359.97438 * 20 19 9 36 36 H 1.07998 * 120.00140 * 180.22231 * 21 20 19 37 37 H 1.07994 * 120.00214 * 179.82956 * 22 21 20 38 38 H 1.07999 * 120.00561 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00215 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.02805 * 359.70232 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2682 2.0702 -1.1980 5 6 2.7345 3.3716 -1.2014 6 6 2.9655 4.0270 -0.0072 7 6 2.7297 3.3779 1.1958 8 8 2.9558 4.0206 2.3717 9 6 3.3432 5.3940 2.2963 10 1 2.7769 5.8885 1.5071 11 6 4.8159 5.4844 1.9901 12 1 5.1569 6.0618 1.1434 13 6 5.7280 4.8299 2.7905 14 7 5.3109 3.9807 3.7040 15 14 7.5561 5.1493 2.5774 16 1 7.7621 6.1400 1.4906 17 1 8.1166 5.6823 3.8451 18 1 8.2429 3.8800 2.2275 19 6 3.0619 6.0682 3.6144 20 6 3.1393 5.3461 4.7906 21 6 2.8852 5.9656 6.0000 22 6 2.5456 7.3052 6.0325 23 6 2.4631 8.0261 4.8558 24 6 2.7210 7.4076 3.6468 25 6 2.2623 2.0715 1.1965 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.0877 1.5597 -2.1325 32 1 2.9174 3.8766 -2.1383 33 1 3.3294 5.0439 -0.0104 34 1 5.9525 3.5200 4.2669 35 1 3.4009 4.2987 4.7649 36 1 2.9491 5.4024 6.9192 37 1 2.3444 7.7885 6.9770 38 1 2.1974 9.0726 4.8811 39 1 2.6569 7.9708 2.7275 40 1 2.0777 1.5640 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = 3.297342 kcal Electronic energy + Delta-G solvation = -21671.289759 eV Core-core repulsion = 18608.781701 eV Total energy + Delta-G solvation = -3062.508058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.28441 -38.22659 -36.61811 -33.45144 -32.85899 -30.87084 -29.90784 -29.35917 -28.33860 -26.94346 -23.70223 -23.13888 -21.84367 -21.39601 -20.73056 -19.59537 -17.26764 -16.14427 -16.09385 -15.17428 -15.06581 -14.91100 -14.13778 -14.10482 -13.76085 -13.47004 -13.43587 -12.97475 -12.59350 -12.45411 -12.41843 -12.03361 -11.85949 -11.72222 -11.33181 -11.05826 -10.96119 -10.90251 -10.63307 -10.54419 -10.42797 -10.16286 -10.12791 -9.43988 -9.28310 -8.70285 -8.08791 -7.97470 -7.65435 -7.08486 -6.17566 -4.37138 2.07558 2.28896 2.33126 2.40863 3.19872 3.28693 3.31412 4.26608 4.48028 4.56499 4.82848 5.12018 5.17689 5.29258 5.57622 5.62647 5.68079 5.77508 5.79227 5.84012 5.91929 6.01303 6.05178 6.16979 6.19679 6.26649 6.37680 6.43226 6.48005 6.56966 6.67519 6.81649 6.91209 7.08391 7.17056 7.26696 7.29300 7.35662 7.49925 7.64415 7.70163 7.82614 7.87579 8.04930 8.50818 8.91896 9.36114 10.79347 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.005908 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.083597 B = 4737.826633 C = 5677.381923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.054 4.054 4 C -0.187 4.187 5 C -0.086 4.086 6 C -0.208 4.208 7 C 0.183 3.817 8 O -0.286 6.286 9 C 0.240 3.760 10 H 0.032 0.968 11 C -0.554 4.554 12 H 0.067 0.933 13 C 0.087 3.913 14 N -0.838 5.838 15 Si 0.889 3.111 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.282 1.282 19 C -0.035 4.035 20 C -0.070 4.070 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.173 4.173 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -1.958 -2.952 7.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.205 4.205 5 C -0.104 4.104 6 C -0.226 4.226 7 C 0.134 3.866 8 O -0.197 6.197 9 C 0.186 3.814 10 H 0.050 0.950 11 C -0.590 4.590 12 H 0.085 0.915 13 C -0.121 4.121 14 N -0.471 5.471 15 Si 0.716 3.284 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.036 4.036 20 C -0.088 4.088 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.157 4.157 24 C -0.145 4.145 25 C -0.191 4.191 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.624 -2.139 -2.582 7.424 hybrid contribution 1.428 0.470 -0.128 1.509 sum -5.195 -1.669 -2.710 6.092 Atomic orbital electron populations 1.21730 0.95202 1.00994 1.02223 1.20475 0.95792 0.93292 1.02230 1.19445 0.98154 0.95160 0.92646 1.20584 1.07494 0.95838 0.96627 1.20811 0.97879 0.94528 0.97160 1.21392 1.07045 1.02163 0.92035 1.18997 0.89733 0.91537 0.86320 1.86216 1.79756 1.27640 1.26122 1.18933 0.94725 0.77300 0.90406 0.94979 1.21329 0.90000 1.33701 1.13948 0.91497 1.24954 0.99138 0.93605 0.94427 1.69969 1.34231 1.23176 1.19754 0.86577 0.85056 0.78375 0.78354 1.19516 1.20629 1.20766 1.19935 0.94322 0.93223 0.96076 1.21574 0.94131 1.02563 0.90527 1.21148 1.01985 0.94792 0.98036 1.20858 1.03552 0.94926 0.97165 1.20784 1.03321 0.98751 0.92833 1.20767 1.01679 0.94755 0.97275 1.20189 1.07550 0.93730 0.97671 0.92977 0.92480 0.92748 0.91567 0.91338 0.87517 0.87193 0.85089 0.92651 0.83060 0.87618 0.87832 0.87540 0.87307 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.90 37.16 0.37 -1.32 16 2 C -0.08 -1.08 6.06 -27.88 -0.17 -1.25 16 3 C -0.05 -0.92 5.13 -104.65 -0.54 -1.46 16 4 C -0.19 -3.12 9.70 -39.56 -0.38 -3.51 16 5 C -0.09 -1.52 10.04 -39.60 -0.40 -1.92 16 6 C -0.21 -4.30 8.62 -39.43 -0.34 -4.64 16 7 C 0.18 4.08 6.56 -39.22 -0.26 3.83 16 8 O -0.29 -7.01 7.69 -19.42 -0.15 -7.16 16 9 C 0.24 5.77 2.12 -29.04 -0.06 5.71 16 10 H 0.03 0.74 6.48 -51.93 -0.34 0.40 16 11 C -0.55 -14.25 7.58 -34.44 -0.26 -14.51 16 12 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 13 C 0.09 2.28 5.21 -17.82 -0.09 2.18 16 14 N -0.84 -22.17 9.43 55.43 0.52 -21.65 16 15 Si 0.89 20.60 29.55 -169.99 -5.02 15.58 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.03 -0.81 4.84 -104.62 -0.51 -1.31 16 20 C -0.07 -1.59 8.12 -39.58 -0.32 -1.92 16 21 C -0.14 -2.82 10.05 -39.58 -0.40 -3.21 16 22 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 23 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 24 C -0.13 -2.58 9.70 -39.58 -0.38 -2.97 16 25 C -0.17 -3.44 9.64 -39.44 -0.38 -3.82 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 2.77 5.61 -52.49 -0.29 2.48 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.15 3.77 5.86 -52.49 -0.31 3.46 16 36 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -27.34 332.42 -10.11 -37.45 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.55 Total: 6.90 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -4.92 Total: -36.13 kcal Atomic # 7 Polarization: -22.17 SS G_CDS: 0.52 Total: -21.65 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.15 Total: -7.16 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.34 -10.11 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.743 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds