Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46830 * 2 1 4 4 C 1.38290 * 119.96868 * 269.71600 * 3 2 1 5 5 C 1.38245 * 120.11249 * 180.28063 * 4 3 2 6 6 C 1.38173 * 120.05208 * 359.97438 * 5 4 3 7 7 C 1.38712 * 119.94489 * 0.02562 * 6 5 4 8 8 O 1.35899 * 120.05367 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99876 * 4.39881 * 8 7 6 10 10 H 1.08994 * 109.47318 * 39.33833 * 9 8 7 11 11 C 1.50697 * 109.46820 * 279.33392 * 9 8 7 12 12 H 1.08008 * 119.99537 * 125.50156 * 11 9 8 13 13 C 1.37871 * 120.00548 * 305.50298 * 11 9 8 14 14 N 1.31515 * 119.99696 * 9.43646 * 13 11 9 15 15 Si 1.86796 * 120.00122 * 189.43132 * 13 11 9 16 16 H 1.48497 * 109.47486 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47145 * 120.00244 * 15 13 11 18 18 H 1.48508 * 109.47347 * 240.00150 * 15 13 11 19 19 C 1.50700 * 109.46635 * 159.33926 * 9 8 7 20 20 C 1.38236 * 120.00304 * 31.19837 * 19 9 8 21 21 C 1.38239 * 119.99887 * 179.80675 * 20 19 9 22 22 C 1.38232 * 120.00060 * 0.39612 * 21 20 19 23 23 C 1.38236 * 120.00132 * 359.85941 * 22 21 20 24 24 C 1.38237 * 119.99981 * 359.95036 * 23 22 21 25 25 C 1.38120 * 119.97485 * 89.99866 * 3 2 1 26 26 H 1.08998 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47376 * 300.00417 * 1 2 3 28 28 H 1.09001 * 109.46551 * 60.00399 * 1 2 3 29 29 H 1.09002 * 109.47163 * 239.99639 * 2 1 3 30 30 H 1.09001 * 109.46551 * 119.99601 * 2 1 3 31 31 H 1.08000 * 119.94341 * 0.28243 * 4 3 2 32 32 H 1.07992 * 119.97148 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.02269 * 180.02562 * 6 5 4 34 34 H 0.96999 * 120.00053 * 179.97438 * 14 13 11 35 35 H 1.07994 * 119.99960 * 359.97438 * 20 19 9 36 36 H 1.07998 * 120.00140 * 180.22231 * 21 20 19 37 37 H 1.07994 * 120.00214 * 179.82956 * 22 21 20 38 38 H 1.07999 * 120.00561 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00215 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.02805 * 359.70232 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2682 2.0702 -1.1980 5 6 2.7345 3.3716 -1.2014 6 6 2.9655 4.0270 -0.0072 7 6 2.7297 3.3779 1.1958 8 8 2.9558 4.0206 2.3717 9 6 3.3432 5.3940 2.2963 10 1 2.7769 5.8885 1.5071 11 6 4.8159 5.4844 1.9901 12 1 5.1569 6.0618 1.1434 13 6 5.7280 4.8299 2.7905 14 7 5.3109 3.9807 3.7040 15 14 7.5561 5.1493 2.5774 16 1 7.7621 6.1400 1.4906 17 1 8.1166 5.6823 3.8451 18 1 8.2429 3.8800 2.2275 19 6 3.0619 6.0682 3.6144 20 6 3.1393 5.3461 4.7906 21 6 2.8852 5.9656 6.0000 22 6 2.5456 7.3052 6.0325 23 6 2.4631 8.0261 4.8558 24 6 2.7210 7.4076 3.6468 25 6 2.2623 2.0715 1.1965 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.0877 1.5597 -2.1325 32 1 2.9174 3.8766 -2.1383 33 1 3.3294 5.0439 -0.0104 34 1 5.9525 3.5200 4.2669 35 1 3.4009 4.2987 4.7649 36 1 2.9491 5.4024 6.9192 37 1 2.3444 7.7885 6.9770 38 1 2.1974 9.0726 4.8811 39 1 2.6569 7.9708 2.7275 40 1 2.0777 1.5640 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055021621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = -7.728257 kcal Electronic energy + Delta-G solvation = -21671.767865 eV Core-core repulsion = 18608.781701 eV Total energy + Delta-G solvation = -3062.986163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87969 -39.76386 -38.18976 -34.98810 -34.43474 -32.56903 -31.47394 -30.81419 -29.73213 -28.74162 -25.31811 -24.54015 -23.39007 -22.89471 -22.23731 -21.14349 -19.00477 -17.87245 -17.64007 -16.85499 -16.62425 -16.51558 -15.63737 -15.52844 -15.46180 -14.97508 -14.75593 -14.30436 -14.11562 -13.93814 -13.91754 -13.55873 -13.46218 -13.29742 -12.89418 -12.74826 -12.49649 -12.36372 -12.11869 -12.08351 -11.77600 -11.72853 -11.60253 -11.15594 -11.02193 -10.65160 -9.57037 -9.53451 -9.28849 -8.70680 -8.10441 -6.36902 0.58972 0.71058 0.82264 0.84099 1.33482 1.36950 1.45751 2.34738 2.81701 3.05923 3.20190 3.23056 3.97998 4.11226 4.23921 4.28379 4.31507 4.41832 4.48418 4.53537 4.57018 4.63453 4.68556 4.77432 4.81292 4.88238 5.00474 5.07032 5.12859 5.19978 5.33699 5.34659 5.44048 5.51628 5.60735 5.69161 5.75879 5.80864 5.83959 5.94184 5.98103 6.13695 6.25919 6.41383 6.58185 7.14454 7.40061 8.83257 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.005908 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.083597 B = 4737.826633 C = 5677.381923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.048 4.048 4 C -0.179 4.179 5 C -0.084 4.084 6 C -0.228 4.228 7 C 0.144 3.856 8 O -0.309 6.309 9 C 0.243 3.757 10 H 0.028 0.972 11 C -0.565 4.565 12 H 0.057 0.943 13 C 0.047 3.953 14 N -0.856 5.856 15 Si 0.941 3.059 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.283 1.283 19 C -0.064 4.064 20 C -0.094 4.094 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.192 4.192 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.260 0.740 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 -1.793 -3.666 8.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.048 4.048 4 C -0.197 4.197 5 C -0.101 4.101 6 C -0.247 4.247 7 C 0.096 3.904 8 O -0.221 6.221 9 C 0.189 3.811 10 H 0.045 0.955 11 C -0.601 4.601 12 H 0.076 0.924 13 C -0.159 4.159 14 N -0.490 5.490 15 Si 0.767 3.233 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.209 1.209 19 C -0.065 4.065 20 C -0.112 4.112 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.211 4.211 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.340 -1.976 -3.305 8.288 hybrid contribution 1.542 0.382 0.038 1.589 sum -5.798 -1.593 -3.266 6.843 Atomic orbital electron populations 1.21704 0.93716 1.02544 1.01805 1.20575 0.96959 0.90745 1.03425 1.19914 0.96374 0.96851 0.91667 1.21049 1.05445 0.95273 0.97938 1.21180 0.96700 0.95159 0.97111 1.21392 1.08528 1.01901 0.92886 1.19448 0.91844 0.92728 0.86371 1.86163 1.80648 1.27781 1.27509 1.18861 0.93733 0.77402 0.91150 0.95455 1.21474 0.91390 1.33553 1.13727 0.92443 1.25553 1.02209 0.93672 0.94494 1.70124 1.34743 1.23824 1.20331 0.85778 0.81297 0.78035 0.78212 1.19182 1.20431 1.20870 1.20045 0.96328 0.94540 0.95576 1.21386 0.96290 1.01512 0.92057 1.21398 1.01549 0.96103 0.97533 1.21309 1.01419 0.93973 0.98948 1.21243 1.01348 1.00545 0.91786 1.21027 1.01735 0.93857 0.99077 1.20369 1.08567 0.93233 0.98884 0.90467 0.93891 0.92214 0.89150 0.91396 0.83614 0.84186 0.86634 0.93022 0.86137 0.85703 0.83764 0.83578 0.86187 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.90 71.98 0.71 -2.25 16 2 C -0.08 -1.96 6.06 29.85 0.18 -1.78 16 3 C -0.05 -1.59 5.13 -19.88 -0.10 -1.69 16 4 C -0.18 -5.55 9.70 22.28 0.22 -5.34 16 5 C -0.08 -2.89 10.04 22.26 0.22 -2.67 16 6 C -0.23 -9.83 8.62 22.37 0.19 -9.64 16 7 C 0.14 6.79 6.56 22.51 0.15 6.94 16 8 O -0.31 -16.24 7.69 -92.41 -0.71 -16.95 16 9 C 0.24 12.38 2.12 29.10 0.06 12.44 16 10 H 0.03 1.36 6.48 -2.39 -0.02 1.34 16 11 C -0.56 -30.52 7.58 25.60 0.19 -30.32 16 12 H 0.06 3.09 7.83 -2.91 -0.02 3.07 16 13 C 0.05 2.53 5.21 84.65 0.44 2.98 16 14 N -0.86 -47.59 9.43 21.45 0.20 -47.39 16 15 Si 0.94 43.41 29.55 68.60 2.03 45.43 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 C -0.06 -3.09 4.84 -19.86 -0.10 -3.19 16 20 C -0.09 -4.48 8.12 22.27 0.18 -4.30 16 21 C -0.15 -5.82 10.05 22.27 0.22 -5.60 16 22 C -0.14 -4.67 10.05 22.27 0.22 -4.45 16 23 C -0.13 -4.49 10.05 22.27 0.22 -4.26 16 24 C -0.14 -5.66 9.70 22.27 0.22 -5.45 16 25 C -0.19 -7.95 9.64 22.36 0.22 -7.73 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 30 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 31 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.12 5.22 5.61 -2.91 -0.02 5.20 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.12 6.45 5.86 -2.91 -0.02 6.43 16 36 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 38 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -62.67 332.42 5.99 -56.68 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.02 Total: 28.53 kcal Atomic # 6 Polarization: -69.76 SS G_CDS: 3.46 Total: -66.30 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.20 Total: -47.39 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.71 Total: -16.95 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -62.67 5.99 -56.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.955 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds