Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99906 * 2 1 4 4 H 1.48501 * 109.46747 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46990 * 299.99910 * 3 2 1 6 6 H 1.48496 * 109.46775 * 60.00382 * 3 2 1 7 7 C 1.37873 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 185.14186 * 7 2 1 9 9 C 1.50699 * 120.00192 * 5.14924 * 7 2 1 10 10 H 1.08997 * 109.47183 * 24.86532 * 9 7 2 11 11 O 1.42900 * 109.47321 * 144.87486 * 9 7 2 12 12 C 1.42903 * 113.99729 * 269.99564 * 11 9 7 13 13 C 1.52999 * 109.47346 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47575 * 180.02562 * 13 12 11 15 15 C 1.38238 * 119.99991 * 269.73006 * 14 13 12 16 16 C 1.38235 * 119.99875 * 180.32211 * 15 14 13 17 17 C 1.38238 * 120.00021 * 359.92742 * 16 15 14 18 18 C 1.38239 * 120.00093 * 0.06783 * 17 16 15 19 19 C 1.38235 * 119.99648 * 89.99912 * 14 13 12 20 20 C 1.50704 * 109.46736 * 264.87012 * 9 7 2 21 21 C 1.38234 * 120.00159 * 277.70012 * 20 9 7 22 22 C 1.38240 * 119.99989 * 179.81193 * 21 20 9 23 23 C 1.38238 * 119.99475 * 0.39774 * 22 21 20 24 24 C 1.38227 * 120.00236 * 359.85642 * 23 22 21 25 25 C 1.38232 * 120.00445 * 359.95599 * 24 23 22 26 26 H 0.97003 * 119.99650 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47134 * 60.00029 * 12 11 9 28 28 H 1.09002 * 109.47165 * 300.00248 * 12 11 9 29 29 H 1.09006 * 109.46778 * 60.00058 * 13 12 11 30 30 H 1.08996 * 109.47390 * 300.00801 * 13 12 11 31 31 H 1.08002 * 119.99848 * 0.27767 * 15 14 13 32 32 H 1.07993 * 119.99945 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.99862 * 180.02562 * 17 16 15 34 34 H 1.07992 * 119.99879 * 179.97438 * 18 17 16 35 35 H 1.07993 * 120.00236 * 359.72874 * 19 14 13 36 36 H 1.07997 * 119.99856 * 359.97438 * 21 20 9 37 37 H 1.07991 * 120.00014 * 180.23058 * 22 21 20 38 38 H 1.08004 * 119.99678 * 179.83392 * 23 22 21 39 39 H 1.08010 * 119.99609 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.00143 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0833 9 6 1.2555 -2.4964 -0.1182 10 1 0.3027 -2.3237 -0.6186 11 8 2.0314 -3.4251 -0.8783 12 6 1.7807 -3.3781 -2.2844 13 6 2.6616 -4.4081 -2.9942 14 6 2.3977 -4.3582 -4.4771 15 6 1.4198 -5.1620 -5.0325 16 6 1.1822 -5.1211 -6.3937 17 6 1.9216 -4.2752 -7.1992 18 6 2.8995 -3.4714 -6.6437 19 6 3.1374 -3.5127 -5.2826 20 6 1.0057 -3.0583 1.2576 21 6 1.9958 -3.7773 1.9009 22 6 1.7680 -4.2893 3.1646 23 6 0.5472 -4.0893 3.7815 24 6 -0.4446 -3.3749 3.1361 25 6 -0.2155 -2.8595 1.8741 26 1 -0.4850 0.8401 0.0004 27 1 2.0114 -2.3818 -2.6615 28 1 0.7314 -3.6045 -2.4741 29 1 2.4313 -5.4046 -2.6172 30 1 3.7107 -4.1815 -2.8044 31 1 0.8418 -5.8225 -4.4031 32 1 0.4186 -5.7493 -6.8277 33 1 1.7358 -4.2430 -8.2625 34 1 3.4774 -2.8109 -7.2731 35 1 3.9013 -2.8848 -4.8486 36 1 2.9481 -3.9367 1.4172 37 1 2.5427 -4.8479 3.6686 38 1 0.3682 -4.4917 4.7677 39 1 -1.3986 -3.2190 3.6181 40 1 -0.9905 -2.3016 1.3697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = -11.026726 kcal Electronic energy + Delta-G solvation = -20868.139410 eV Core-core repulsion = 17805.010214 eV Total energy + Delta-G solvation = -3063.129196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.18905 -38.38869 -36.58340 -33.52085 -32.52263 -30.79671 -30.59153 -29.94930 -28.12302 -26.45470 -23.42771 -22.62122 -22.47062 -21.52581 -20.62277 -20.09132 -16.81710 -16.66326 -15.95760 -15.63620 -15.24796 -14.91210 -14.43593 -14.39603 -14.01901 -13.63146 -13.38178 -13.30133 -12.76950 -12.60739 -12.49233 -12.39384 -11.84398 -11.56658 -11.40571 -11.10581 -11.01913 -10.88394 -10.73477 -10.58693 -10.28321 -10.17090 -9.85838 -9.42580 -8.83599 -8.65858 -8.56052 -8.38148 -8.00652 -7.62661 -6.18817 -4.25896 1.44646 1.48932 2.33108 2.34649 3.21913 3.30140 3.35204 3.86182 4.29821 4.62004 4.83740 4.95667 5.04098 5.15508 5.17322 5.33568 5.49091 5.62896 5.68780 5.73670 5.79730 5.87334 5.91970 6.03719 6.11672 6.20784 6.39826 6.43476 6.47978 6.55132 6.57650 6.60381 6.61652 6.84967 6.92066 7.02346 7.10737 7.17176 7.35637 7.49506 7.73251 7.74694 7.96690 8.12273 8.35697 8.96148 9.42026 10.85808 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.004757 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.720394 B = 5884.172667 C = 7288.877306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.234 3.766 10 H 0.054 0.946 11 O -0.401 6.401 12 C 0.085 3.915 13 C -0.081 4.081 14 C -0.070 4.070 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.027 4.027 21 C -0.109 4.109 22 C -0.135 4.135 23 C -0.152 4.152 24 C -0.131 4.131 25 C -0.106 4.106 26 H 0.265 0.735 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 -8.360 -7.175 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.178 3.822 10 H 0.072 0.928 11 O -0.322 6.322 12 C 0.008 3.992 13 C -0.119 4.119 14 C -0.070 4.070 15 C -0.135 4.135 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.132 4.132 20 C -0.028 4.028 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.170 4.170 24 C -0.150 4.150 25 C -0.125 4.125 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.760 -8.356 -7.089 11.098 hybrid contribution 0.178 1.323 0.015 1.335 sum 1.937 -7.032 -7.074 10.161 Atomic orbital electron populations 1.69907 1.06002 1.27207 1.49038 1.25005 0.94939 0.99501 0.94064 0.86461 0.80364 0.83098 0.77737 1.19462 1.20751 1.20798 1.21491 0.94098 0.89808 1.50745 0.91724 1.18824 0.92547 0.85712 0.85071 0.92769 1.87657 1.66818 1.61707 1.15984 1.22031 0.96433 0.97490 0.83266 1.20556 1.01329 1.00533 0.89449 1.19900 0.95616 0.95841 0.95642 1.21110 0.97745 0.99568 0.95041 1.21107 0.99704 0.99273 0.93877 1.21092 0.96911 0.97330 0.99566 1.21128 0.98297 0.99286 0.95164 1.21149 0.99990 0.98524 0.93559 1.20367 0.92049 0.92160 0.98219 1.20929 0.99428 0.98131 0.94255 1.20972 0.96866 1.01588 0.95865 1.20828 0.94525 1.02170 0.99480 1.20972 0.98612 0.99654 0.95724 1.21051 0.97487 0.98877 0.95054 0.92524 0.93324 0.94858 0.90748 0.90427 0.86031 0.86336 0.86493 0.86291 0.85845 0.86591 0.87549 0.87694 0.87438 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.33 12.84 55.43 0.71 -23.62 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.22 8.62 -34.44 -0.30 -14.51 16 8 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 9 C 0.23 5.89 2.40 -29.03 -0.07 5.82 16 10 H 0.05 1.47 6.91 -51.93 -0.36 1.11 16 11 O -0.40 -9.21 9.21 -35.23 -0.32 -9.53 16 12 C 0.09 1.68 5.72 37.16 0.21 1.89 16 13 C -0.08 -1.28 5.71 -27.89 -0.16 -1.44 16 14 C -0.07 -1.01 5.13 -104.63 -0.54 -1.55 16 15 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 16 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 17 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 18 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 19 C -0.11 -1.56 9.70 -39.58 -0.38 -1.94 16 20 C -0.03 -0.65 4.97 -104.62 -0.52 -1.17 16 21 C -0.11 -2.36 9.36 -39.58 -0.37 -2.73 16 22 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 23 C -0.15 -2.75 10.05 -39.59 -0.40 -3.14 16 24 C -0.13 -2.55 10.05 -39.59 -0.40 -2.94 16 25 C -0.11 -2.39 9.67 -39.58 -0.38 -2.77 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 2.47 7.71 -52.49 -0.40 2.06 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.12 2.90 8.05 -52.49 -0.42 2.47 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -28.80 345.29 -10.60 -39.41 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.80 Total: 5.72 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -5.37 Total: -33.17 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.71 Total: -23.62 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.32 Total: -9.53 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.80 -10.60 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.380 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds