Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46780 * 2 1 4 4 C 1.38162 * 120.02846 * 265.02092 * 3 2 1 5 5 C 1.38252 * 120.05540 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.11050 * 0.02562 * 5 4 3 7 7 C 1.38130 * 120.05951 * 359.68109 * 6 5 4 8 8 C 1.38706 * 120.02627 * 85.00529 * 3 2 1 9 9 O 1.35908 * 120.05738 * 0.02562 * 8 3 2 10 10 C 1.42895 * 116.99801 * 174.84320 * 9 8 3 11 11 H 1.09004 * 109.47467 * 324.30725 * 10 9 8 12 12 C 1.50704 * 109.47222 * 84.30953 * 10 9 8 13 13 H 1.08004 * 119.99910 * 239.99724 * 12 10 9 14 14 C 1.37874 * 119.99762 * 59.99510 * 12 10 9 15 15 N 1.31505 * 120.00280 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99696 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47267 * 59.99891 * 16 14 12 18 18 H 1.48505 * 109.46933 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46955 * 299.99970 * 16 14 12 20 20 C 1.50703 * 109.46984 * 204.30506 * 10 9 8 21 21 C 1.38239 * 119.99985 * 145.00313 * 20 10 9 22 22 C 1.38230 * 119.99812 * 179.97438 * 21 20 10 23 23 C 1.38235 * 120.00268 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99645 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00348 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47416 * 299.99425 * 1 2 3 27 27 H 1.09001 * 109.47485 * 59.99896 * 1 2 3 28 28 H 1.09007 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47019 * 240.00339 * 2 1 3 30 30 H 1.09001 * 109.47485 * 120.00104 * 2 1 3 31 31 H 1.08005 * 119.97654 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.94218 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.97542 * 179.97438 * 6 5 4 34 34 H 1.07994 * 120.03293 * 180.32219 * 7 6 5 35 35 H 0.96999 * 120.00232 * 179.97438 * 15 14 12 36 36 H 1.08004 * 119.99650 * 0.25331 * 21 20 10 37 37 H 1.08000 * 119.99710 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.99711 * 179.97438 * 23 22 21 39 39 H 1.08008 * 119.99730 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.99871 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0381 -1.1917 5 6 2.8208 3.3418 -1.1924 6 6 2.9544 4.0309 -0.0010 7 6 2.6217 3.4204 1.1925 8 6 2.1650 2.1101 1.1963 9 8 1.8429 1.5050 2.3699 10 6 2.1107 2.2330 3.5700 11 1 3.0282 2.8089 3.4486 12 6 0.9646 3.1686 3.8565 13 1 1.1374 4.2333 3.9115 14 6 -0.3046 2.6653 4.0484 15 7 -0.5149 1.3689 3.9819 16 14 -1.7255 3.8251 4.4028 17 1 -1.8833 4.7748 3.2721 18 1 -2.9755 3.0405 4.5678 19 1 -1.4474 4.5820 5.6497 20 6 2.2709 1.2689 4.7172 21 6 3.1762 1.5395 5.7262 22 6 3.3228 0.6555 6.7787 23 6 2.5636 -0.4990 6.8225 24 6 1.6576 -0.7690 5.8140 25 6 1.5103 0.1156 4.7621 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2567 1.5021 -2.1236 32 1 3.0765 3.8226 -2.1249 33 1 3.3146 5.0491 -0.0041 34 1 2.7212 3.9607 2.1222 35 1 -1.4078 1.0148 4.1173 36 1 3.7658 2.4439 5.6945 37 1 4.0304 0.8667 7.5668 38 1 2.6785 -1.1898 7.6446 39 1 1.0648 -1.6712 5.8480 40 1 0.8027 -0.0957 3.9740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = 8.284952 kcal Electronic energy + Delta-G solvation = -22278.504658 eV Core-core repulsion = 19216.212880 eV Total energy + Delta-G solvation = -3062.291779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.39883 -38.13479 -36.30518 -33.54225 -32.96561 -30.67738 -29.76857 -29.28557 -28.26770 -26.99302 -23.45155 -23.22200 -21.70500 -21.38745 -20.32559 -19.84693 -17.45001 -16.16389 -16.05326 -15.09123 -15.03508 -14.91289 -14.02221 -13.92400 -13.79640 -13.34046 -13.07903 -13.01147 -12.64601 -12.38292 -12.28232 -11.80854 -11.61966 -11.59004 -11.26487 -11.05086 -11.02338 -10.80645 -10.61659 -10.47375 -10.21673 -10.12040 -10.03738 -9.33100 -9.22941 -8.83650 -8.14048 -7.86724 -7.56600 -7.08629 -6.08861 -4.43734 2.02475 2.26964 2.38978 2.55210 3.20591 3.25015 3.28105 4.23715 4.47110 4.52044 4.95083 5.12494 5.42623 5.45226 5.69334 5.75950 5.76102 5.86737 5.90951 5.99935 6.05950 6.13538 6.22932 6.29229 6.40833 6.44270 6.47103 6.60070 6.64179 6.78977 6.83571 6.98307 7.00516 7.12593 7.17404 7.22749 7.29819 7.42071 7.51635 7.65094 7.73552 7.86970 7.97211 8.20395 8.48333 8.87056 9.32797 10.74487 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.007229 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.794065 B = 3872.427690 C = 4474.993307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.186 4.186 6 C -0.091 4.091 7 C -0.205 4.205 8 C 0.177 3.823 9 O -0.288 6.288 10 C 0.240 3.760 11 H 0.032 0.968 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.087 3.913 15 N -0.844 5.844 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.275 1.275 20 C -0.043 4.043 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.045 4.045 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.265 0.735 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 -1.666 -3.971 6.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.205 4.205 6 C -0.110 4.110 7 C -0.224 4.224 8 C 0.128 3.872 9 O -0.200 6.200 10 C 0.186 3.814 11 H 0.050 0.950 12 C -0.580 4.580 13 H 0.083 0.917 14 C -0.120 4.120 15 N -0.479 5.479 16 Si 0.720 3.280 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.201 1.201 20 C -0.044 4.044 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.171 4.171 25 C -0.064 4.064 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.048 -2.001 -3.891 5.961 hybrid contribution -0.892 1.062 0.522 1.482 sum 3.156 -0.939 -3.369 4.711 Atomic orbital electron populations 1.21696 0.95196 1.00674 1.02444 1.20202 0.96018 0.92486 1.01481 1.19222 1.06486 0.97263 0.90965 1.20654 0.98895 0.94795 0.96260 1.20724 1.06849 0.95553 0.97366 1.20823 0.98892 0.98835 0.92411 1.21391 1.06296 0.95539 0.99142 1.18902 0.90341 0.90709 0.87208 1.86247 1.76672 1.45171 1.11912 1.18944 0.95134 0.88256 0.79062 0.94980 1.21315 0.92559 0.93011 1.51125 0.91688 1.24968 0.98875 0.95065 0.93092 1.69786 1.21602 1.10937 1.45544 0.86630 0.81326 0.80988 0.79022 1.19937 1.20920 1.20057 1.19792 0.93923 0.94422 0.96251 1.20758 0.99405 0.98933 0.95332 1.20701 1.01367 0.95926 0.98668 1.20846 0.98672 0.97687 0.98938 1.21150 0.99581 0.99958 0.96364 1.21857 0.94594 0.91345 0.98573 0.90832 0.93925 0.93573 0.92778 0.90875 0.86898 0.87385 0.87196 0.85097 0.92404 0.87694 0.87859 0.88155 0.87910 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 37.16 0.37 -2.10 16 2 C -0.06 -1.12 5.79 -27.88 -0.16 -1.28 16 3 C -0.14 -2.64 5.15 -104.48 -0.54 -3.18 16 4 C -0.09 -1.47 9.68 -39.60 -0.38 -1.86 16 5 C -0.19 -3.03 10.04 -39.56 -0.40 -3.43 16 6 C -0.09 -1.59 10.04 -39.61 -0.40 -1.99 16 7 C -0.20 -4.14 8.69 -39.43 -0.34 -4.48 16 8 C 0.18 3.81 6.56 -39.22 -0.26 3.55 16 9 O -0.29 -6.76 7.48 -19.45 -0.15 -6.90 16 10 C 0.24 5.66 2.11 -29.03 -0.06 5.60 16 11 H 0.03 0.73 6.26 -51.93 -0.33 0.40 16 12 C -0.54 -13.78 7.93 -34.44 -0.27 -14.05 16 13 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 14 C 0.09 2.21 5.24 -17.82 -0.09 2.12 16 15 N -0.84 -21.42 8.52 55.43 0.47 -20.95 16 16 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 C -0.04 -1.00 4.80 -104.62 -0.50 -1.50 16 21 C -0.13 -2.62 9.68 -39.58 -0.38 -3.01 16 22 C -0.15 -2.80 10.05 -39.59 -0.40 -3.20 16 23 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -3.08 10.05 -39.59 -0.40 -3.48 16 25 C -0.04 -1.03 7.45 -39.59 -0.29 -1.32 16 26 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.13 2.70 5.68 -52.49 -0.30 2.40 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.10 2.00 8.06 -52.48 -0.42 1.57 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.16 4.02 5.52 -52.49 -0.29 3.73 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -26.19 330.22 -10.13 -36.32 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.50 Total: 7.95 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: -4.91 Total: -36.69 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.47 Total: -20.95 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.15 Total: -6.90 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.19 -10.13 -36.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.607 kcal (2) G-P(sol) polarization free energy of solvation -26.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds