Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46948 * 2 1 4 4 C 1.38176 * 120.02923 * 265.32467 * 3 2 1 5 5 C 1.38244 * 120.05565 * 180.30019 * 4 3 2 6 6 C 1.38288 * 120.11160 * 359.67165 * 5 4 3 7 7 C 1.38120 * 120.05537 * 0.02562 * 6 5 4 8 8 C 1.38706 * 120.03082 * 84.99757 * 3 2 1 9 9 O 1.35903 * 120.05592 * 0.02562 * 8 3 2 10 10 C 1.42895 * 117.00216 * 185.55396 * 9 8 3 11 11 H 1.09005 * 109.47213 * 33.89527 * 10 9 8 12 12 C 1.50700 * 109.47284 * 273.89840 * 10 9 8 13 13 H 1.08001 * 119.99888 * 330.67056 * 12 10 9 14 14 C 1.37875 * 120.00331 * 150.67301 * 12 10 9 15 15 N 1.31516 * 120.00428 * 180.29740 * 14 12 10 16 16 Si 1.86804 * 119.99852 * 0.28741 * 14 12 10 17 17 H 1.48498 * 109.46775 * 87.60115 * 16 14 12 18 18 H 1.48497 * 109.47287 * 207.59959 * 16 14 12 19 19 H 1.48499 * 109.47103 * 327.60293 * 16 14 12 20 20 C 1.50703 * 109.47262 * 153.89681 * 10 9 8 21 21 C 1.38237 * 119.99664 * 38.59816 * 20 10 9 22 22 C 1.38236 * 119.99464 * 179.80843 * 21 20 10 23 23 C 1.38230 * 120.00205 * 0.40449 * 22 21 20 24 24 C 1.38239 * 120.00213 * 359.84878 * 23 22 21 25 25 C 1.38234 * 119.99795 * 218.87482 * 20 10 9 26 26 H 1.09003 * 109.47157 * 299.99820 * 1 2 3 27 27 H 1.08999 * 109.47565 * 60.00086 * 1 2 3 28 28 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47157 * 240.00180 * 2 1 3 30 30 H 1.08999 * 109.47475 * 119.99365 * 2 1 3 31 31 H 1.08002 * 119.96590 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.94252 * 179.69929 * 5 4 3 33 33 H 1.08002 * 119.96825 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.02919 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00318 * 179.97438 * 15 14 12 36 36 H 1.07994 * 119.99999 * 359.97438 * 21 20 10 37 37 H 1.07998 * 119.99692 * 180.22999 * 22 21 20 38 38 H 1.08007 * 120.00167 * 179.83421 * 23 22 21 39 39 H 1.07994 * 120.00285 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00346 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3546 2.0403 -1.1923 5 6 2.8214 3.3416 -1.1924 6 6 2.9603 4.0289 -0.0005 7 6 2.6335 3.4163 1.1934 8 6 2.1649 2.1102 1.1963 9 8 1.8426 1.5053 2.3698 10 6 1.8869 2.3114 3.5488 11 1 1.5891 3.3309 3.3034 12 6 3.2890 2.3171 4.1012 13 1 3.9339 1.4647 3.9462 14 6 3.7486 3.4103 4.8045 15 7 4.9742 3.4176 5.2815 16 14 2.6306 4.8813 5.0796 17 1 1.8313 4.6715 6.3135 18 1 3.4539 6.1084 5.2258 19 1 1.7176 5.0331 3.9183 20 6 0.9433 1.7467 4.5793 21 6 0.8232 0.3778 4.7298 22 6 -0.0394 -0.1401 5.6778 23 6 -0.7880 0.7106 6.4693 24 6 -0.6718 2.0795 6.3152 25 6 0.1937 2.5975 5.3699 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 2.2469 1.5055 -2.1244 32 1 3.0774 3.8223 -2.1250 33 1 3.3248 5.0456 -0.0034 34 1 2.7418 3.9536 2.1240 35 1 5.2977 4.1869 5.7760 36 1 1.4052 -0.2868 4.1088 37 1 -0.1305 -1.2095 5.7979 38 1 -1.4640 0.3059 7.2081 39 1 -1.2569 2.7441 6.9333 40 1 0.2846 3.6669 5.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = 5.236034 kcal Electronic energy + Delta-G solvation = -22050.650856 eV Core-core repulsion = 18988.226866 eV Total energy + Delta-G solvation = -3062.423990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.71497 -38.53797 -36.64429 -33.79509 -33.00938 -31.32538 -30.33848 -29.50645 -28.54813 -27.33642 -23.47597 -23.39816 -22.13169 -21.81252 -20.43636 -20.00037 -17.45088 -17.12151 -16.43852 -15.40112 -15.21873 -15.01669 -14.43939 -14.13878 -13.90241 -13.56892 -13.34423 -13.22782 -12.99877 -12.81746 -12.66997 -12.42610 -12.06192 -11.73712 -11.65181 -11.31744 -11.09866 -11.01374 -10.89342 -10.55490 -10.42440 -10.34543 -9.94992 -9.75599 -9.48705 -8.89109 -8.32647 -8.28830 -8.00854 -7.36285 -6.36274 -4.39292 1.87233 1.96099 2.01403 2.07568 3.05408 3.09740 3.16777 4.08406 4.12523 4.33647 4.46706 4.95718 5.20389 5.28073 5.43102 5.45192 5.53571 5.55947 5.62029 5.72771 5.76392 5.82330 5.90877 6.03157 6.12072 6.13518 6.19613 6.25847 6.31388 6.45157 6.51062 6.56931 6.64053 6.68582 6.94920 7.01707 7.03618 7.05996 7.14070 7.20058 7.30229 7.46160 7.60752 8.08225 8.36426 8.75594 9.21767 10.75569 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.007964 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.580841 B = 3515.156081 C = 4946.189471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.133 4.133 4 C -0.089 4.089 5 C -0.174 4.174 6 C -0.090 4.090 7 C -0.193 4.193 8 C 0.165 3.835 9 O -0.308 6.308 10 C 0.206 3.794 11 H 0.049 0.951 12 C -0.527 4.527 13 H 0.088 0.912 14 C 0.086 3.914 15 N -0.876 5.876 16 Si 0.852 3.148 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.258 1.258 20 C -0.040 4.040 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.132 4.132 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.270 0.730 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 -2.430 -6.597 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.134 4.134 4 C -0.107 4.107 5 C -0.193 4.193 6 C -0.109 4.109 7 C -0.212 4.212 8 C 0.118 3.882 9 O -0.221 6.221 10 C 0.151 3.849 11 H 0.067 0.933 12 C -0.564 4.564 13 H 0.106 0.894 14 C -0.119 4.119 15 N -0.512 5.512 16 Si 0.679 3.321 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.040 4.040 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.161 4.161 24 C -0.139 4.139 25 C -0.150 4.150 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.118 -2.524 -6.417 11.432 hybrid contribution -0.155 1.219 0.546 1.345 sum -9.273 -1.304 -5.871 11.053 Atomic orbital electron populations 1.21698 0.95453 1.00919 1.01882 1.20265 0.95626 0.92638 1.02212 1.19185 1.06394 0.97077 0.90739 1.20675 0.98970 0.94823 0.96275 1.20822 1.05412 0.95481 0.97543 1.20891 0.98486 0.99323 0.92165 1.21529 1.04339 0.95735 0.99556 1.18776 0.92652 0.90808 0.85936 1.85932 1.82144 1.40415 1.13567 1.19576 0.95156 0.90261 0.79871 0.93325 1.21211 0.94900 1.04898 1.35410 0.89421 1.24884 0.94716 0.97776 0.94553 1.69854 1.15554 1.30821 1.34975 0.87344 0.81435 0.83197 0.80109 1.18652 1.20715 1.18366 1.20196 0.92640 0.93923 0.97281 1.20906 0.97822 0.94962 0.97728 1.21067 0.97473 0.99065 0.96572 1.20911 1.01074 0.93524 1.00571 1.20911 0.99198 0.95284 0.98459 1.20902 0.97246 0.99121 0.97773 0.92283 0.93299 0.93082 0.92035 0.90683 0.86479 0.86928 0.86708 0.84654 0.91979 0.85936 0.86804 0.86994 0.86885 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.15 0.37 -1.59 16 2 C -0.07 -1.06 5.79 -27.89 -0.16 -1.22 16 3 C -0.13 -2.35 5.15 -104.47 -0.54 -2.89 16 4 C -0.09 -1.39 9.68 -39.60 -0.38 -1.78 16 5 C -0.17 -2.72 10.04 -39.56 -0.40 -3.12 16 6 C -0.09 -1.59 10.04 -39.61 -0.40 -1.99 16 7 C -0.19 -4.01 8.73 -39.43 -0.34 -4.36 16 8 C 0.17 3.43 6.58 -39.22 -0.26 3.18 16 9 O -0.31 -6.82 8.19 -19.44 -0.16 -6.98 16 10 C 0.21 4.82 1.54 -29.03 -0.04 4.78 16 11 H 0.05 1.15 3.36 -51.93 -0.17 0.98 16 12 C -0.53 -14.24 8.38 -34.44 -0.29 -14.53 16 13 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 14 C 0.09 2.35 5.47 -17.82 -0.10 2.26 16 15 N -0.88 -25.54 13.96 55.43 0.77 -24.77 16 16 Si 0.85 19.97 23.60 -169.99 -4.01 15.95 16 17 H -0.26 -5.96 6.78 56.52 0.38 -5.58 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.26 -5.68 5.90 56.52 0.33 -5.35 16 20 C -0.04 -0.87 4.89 -104.62 -0.51 -1.38 16 21 C -0.10 -1.91 9.36 -39.58 -0.37 -2.28 16 22 C -0.12 -2.10 10.05 -39.59 -0.40 -2.49 16 23 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 25 C -0.13 -2.70 8.61 -39.58 -0.34 -3.04 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.79 8.05 -51.93 -0.42 0.38 16 30 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.14 3.06 4.78 -52.49 -0.25 2.81 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.41 7.74 -52.49 -0.41 2.00 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.11 2.20 5.27 -52.49 -0.28 1.92 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -28.95 325.84 -8.82 -37.77 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.38 Total: 8.75 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: -4.96 Total: -35.64 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.77 Total: -24.77 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.16 Total: -6.98 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.01 Total: 15.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.95 -8.82 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.005 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds