Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47091 * 120.00183 * 2 1 3 5 5 N 1.29948 * 126.28469 * 300.02334 * 4 2 1 6 6 O 1.21303 * 110.24669 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.55048 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47320 * 269.97414 * 8 7 6 10 10 C 1.50692 * 109.47320 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00101 * 0.02562 * 10 9 8 12 12 O 1.34233 * 120.00115 * 179.97438 * 10 9 8 13 13 C 1.45200 * 117.00127 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47098 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46885 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00290 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00015 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99478 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00217 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47017 * 89.99982 * 19 17 15 21 21 H 1.48498 * 109.47148 * 209.99947 * 19 17 15 22 22 H 1.48496 * 109.47344 * 330.00184 * 19 17 15 23 23 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.47275 * 299.99918 * 1 2 3 25 25 H 1.09004 * 109.47233 * 60.00162 * 1 2 3 26 26 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47275 * 240.00082 * 2 1 3 28 28 H 1.09001 * 109.47163 * 300.00502 * 3 2 1 29 29 H 1.09000 * 109.46958 * 59.99888 * 3 2 1 30 30 H 1.08993 * 109.47313 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47428 * 29.97302 * 8 7 6 32 32 H 1.08999 * 109.47183 * 149.97495 * 8 7 6 33 33 H 1.09000 * 109.47216 * 300.00452 * 9 8 7 34 34 H 1.08999 * 109.46926 * 59.99925 * 9 8 7 35 35 H 1.09001 * 109.47628 * 300.00833 * 13 12 10 36 36 H 1.09002 * 109.47182 * 60.00348 * 13 12 10 37 37 H 1.09003 * 109.46832 * 300.00134 * 14 13 12 38 38 H 1.08997 * 109.46647 * 60.00161 * 14 13 12 39 39 H 0.97006 * 119.99498 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3416 -1.1476 3.2215 7 6 3.0008 -2.0772 2.5235 8 6 3.8083 -3.2180 3.0870 9 6 5.2588 -2.7705 3.2783 10 6 6.0661 -3.9111 3.8425 11 8 5.5359 -4.9731 4.0679 12 8 7.3746 -3.7475 4.0936 13 6 8.0892 -4.8887 4.6369 14 6 9.5565 -4.5144 4.8562 15 6 10.2982 -5.6991 5.4195 16 1 9.7754 -6.6261 5.6033 17 6 11.6442 -5.5992 5.7015 18 7 12.2807 -4.4701 5.4782 19 14 12.5636 -7.0673 6.4004 20 1 13.1109 -7.8842 5.2876 21 1 13.6776 -6.5908 7.2589 22 1 11.6333 -7.8942 7.2103 23 7 2.8107 -1.8070 1.2545 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 0.0005 31 1 3.3910 -3.5185 4.0480 32 1 3.7762 -4.0614 2.3972 33 1 5.6761 -2.4699 2.3173 34 1 5.2909 -1.9271 3.9681 35 1 7.6423 -5.1781 5.5881 36 1 8.0272 -5.7227 3.9378 37 1 10.0036 -4.2249 3.9052 38 1 9.6180 -3.6806 5.5555 39 1 13.2276 -4.3997 5.6769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061387945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -48.771505 kcal Electronic energy + Delta-G solvation = -20864.998280 eV Core-core repulsion = 17389.383085 eV Total energy + Delta-G solvation = -3475.615195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.86011 -40.11478 -37.20694 -36.52123 -35.44910 -33.78899 -33.36839 -31.29258 -30.24990 -27.66700 -26.58738 -24.91043 -24.78951 -23.19521 -21.19993 -20.56598 -20.21329 -18.36707 -17.91440 -17.42189 -16.45207 -16.28998 -15.85826 -15.46354 -15.05505 -14.71957 -14.52911 -14.10412 -13.88197 -13.21753 -13.19821 -12.71871 -12.70764 -12.46618 -12.36444 -12.09964 -12.01786 -11.60082 -11.54229 -11.46633 -11.26686 -11.18203 -11.08215 -10.79417 -10.72925 -10.37811 -10.14179 -9.70025 -9.65648 -9.32852 -8.46775 -6.12781 -4.17333 0.84474 1.92884 2.42845 2.44458 3.07483 3.27140 3.31030 3.33937 3.38499 3.74447 4.34852 4.39296 4.44669 4.56531 4.58052 4.70827 4.87174 5.10491 5.15012 5.23882 5.25554 5.30190 5.33184 5.38035 5.42628 5.52527 5.61288 5.69140 5.72544 5.84503 6.03716 6.04599 6.59265 6.90872 7.52143 7.58792 7.83046 7.90028 8.08896 8.21289 8.88237 9.47246 10.98653 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.046919 B = 0.002251 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.623692 B =12438.126569 C =12745.728755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.005 4.005 3 C -0.146 4.146 4 C 0.175 3.825 5 N -0.381 5.381 6 O 0.079 5.921 7 C 0.188 3.812 8 C -0.016 4.016 9 C -0.114 4.114 10 C 0.461 3.539 11 O -0.517 6.517 12 O -0.355 6.355 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 N -0.478 5.478 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.809 9.659 -9.700 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.204 4.204 4 C -0.098 4.098 5 N -0.088 5.088 6 O 0.020 5.980 7 C -0.033 4.033 8 C -0.055 4.055 9 C -0.153 4.153 10 C 0.304 3.696 11 O -0.407 6.407 12 O -0.271 6.271 13 C 0.003 3.997 14 C -0.014 4.014 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 N -0.211 5.211 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.192 10.047 -9.811 26.262 hybrid contribution 0.700 -0.996 0.532 1.329 sum -21.492 9.051 -9.279 25.098 Atomic orbital electron populations 1.21852 0.92863 1.02587 1.03010 1.19578 0.96411 0.95480 0.91005 1.21854 1.01646 0.93867 1.03007 1.25861 0.96569 0.92774 0.94639 1.74592 1.17577 1.13779 1.02867 1.85320 1.47598 1.29747 1.35285 1.28691 0.94768 0.93858 0.85950 1.20012 0.90870 0.90471 1.04179 1.21256 0.92105 0.97240 1.04699 1.23107 0.82473 0.88620 0.75401 1.90655 1.72011 1.28534 1.49532 1.86523 1.21172 1.45073 1.74304 1.23691 0.94300 0.84751 0.96989 1.19182 0.85732 0.98064 0.98377 1.20973 0.94151 0.97803 1.43595 0.92223 1.24994 0.97537 0.96221 0.95454 1.69977 1.09957 1.25075 1.47783 0.86460 0.79406 0.82330 0.79048 1.20473 1.21053 1.19713 1.71941 1.17024 1.14126 1.18047 0.91857 0.90991 0.92284 0.87954 0.90992 0.91847 0.92125 0.86782 0.86047 0.86840 0.86956 0.92133 0.92144 0.95330 0.95312 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.17 1.89 6.72 -156.37 -1.05 0.84 16 5 N -0.38 -4.46 12.16 30.90 0.38 -4.08 16 6 O 0.08 0.88 11.31 18.10 0.20 1.08 16 7 C 0.19 1.93 7.77 -13.06 -0.10 1.83 16 8 C -0.02 -0.15 5.13 -27.88 -0.14 -0.29 16 9 C -0.11 -1.16 5.79 -27.88 -0.16 -1.32 16 10 C 0.46 7.02 7.96 36.00 0.29 7.31 16 11 O -0.52 -8.99 15.73 -18.75 -0.29 -9.29 16 12 O -0.35 -6.62 10.22 -39.27 -0.40 -7.02 16 13 C 0.08 1.60 5.40 37.16 0.20 1.80 16 14 C 0.02 0.60 5.35 -27.88 -0.15 0.45 16 15 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 N -0.48 -5.52 11.55 -9.87 -0.11 -5.63 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.12 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -32.00 343.63 -6.37 -38.38 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -5.88 Total: -5.13 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.16 Total: -4.28 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 1.00 Total: -35.08 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.49 Total: -15.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.00 -6.37 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061387945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.395 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds