Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47245 * 269.97905 * 7 6 5 9 9 C 1.52999 * 109.46831 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47014 * 180.02562 * 9 8 7 11 11 O 1.20828 * 120.00069 * 359.97438 * 10 9 8 12 12 O 1.34230 * 120.00523 * 179.97438 * 10 9 8 13 13 C 1.45192 * 117.00674 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47725 * 180.02562 * 13 12 10 15 15 C 1.50692 * 109.47508 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99765 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00218 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99633 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46808 * 90.00272 * 19 17 15 21 21 H 1.48498 * 109.47046 * 210.00316 * 19 17 15 22 22 H 1.48495 * 109.47029 * 330.00412 * 19 17 15 23 23 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 24 24 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 25 25 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 26 26 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 28 28 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 29 29 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 30 30 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 31 31 H 1.08996 * 109.47361 * 300.00011 * 8 7 6 32 32 H 1.08999 * 109.46771 * 60.00540 * 8 7 6 33 33 H 1.09003 * 109.47580 * 300.00042 * 9 8 7 34 34 H 1.08997 * 109.47405 * 60.00583 * 9 8 7 35 35 H 1.09007 * 109.47029 * 300.00450 * 13 12 10 36 36 H 1.09003 * 109.47374 * 59.99723 * 13 12 10 37 37 H 1.09005 * 109.46217 * 300.00023 * 14 13 12 38 38 H 1.09003 * 109.47216 * 59.99264 * 14 13 12 39 39 H 0.97007 * 119.99964 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 6 1.9127 5.4069 -1.7137 9 6 2.3416 6.6201 -2.5414 10 6 1.1428 7.4918 -2.8136 11 8 0.0567 7.1749 -2.3895 12 8 1.2815 8.6202 -3.5271 13 6 0.0840 9.4102 -3.7508 14 6 0.4367 10.6485 -4.5773 15 6 -0.8060 11.4687 -4.8089 16 1 -1.7530 11.1394 -4.4071 17 6 -0.7343 12.6394 -5.5337 18 7 0.4186 13.0399 -6.0233 19 14 -2.2750 13.6557 -5.8213 20 1 -2.4322 14.6390 -4.7196 21 1 -2.1586 14.3760 -7.1147 22 1 -3.4590 12.7602 -5.8582 23 7 2.3032 2.1694 -1.0841 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8763 5.0936 -0.8849 30 1 3.5563 4.1849 -2.3816 31 1 1.1663 4.8356 -2.2656 32 1 1.4865 5.7445 -0.7690 33 1 3.0878 7.1914 -1.9891 34 1 2.7681 6.2830 -3.4861 35 1 -0.6509 8.8116 -4.2892 36 1 -0.3318 9.7194 -2.7918 37 1 1.1717 11.2471 -4.0391 38 1 0.8523 10.3389 -5.5363 39 1 0.4691 13.8634 -6.5335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062411050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -52.318922 kcal Electronic energy + Delta-G solvation = -20655.938961 eV Core-core repulsion = 17180.169938 eV Total energy + Delta-G solvation = -3475.769023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.87184 -40.03025 -36.77928 -36.50708 -35.61187 -33.55500 -33.34858 -31.76637 -30.37261 -28.71191 -25.44308 -25.21585 -23.95003 -22.87495 -21.21353 -20.99224 -20.29035 -18.35939 -17.80231 -17.31282 -16.49883 -16.26974 -15.97243 -15.33432 -15.26844 -14.86150 -14.51700 -14.28045 -13.59465 -13.36673 -13.21328 -12.90066 -12.59539 -12.36285 -12.24526 -12.15594 -11.91705 -11.67916 -11.58111 -11.28182 -11.23739 -11.10926 -11.05779 -10.77011 -10.70623 -10.26512 -10.17128 -9.66598 -9.63051 -9.31460 -8.45967 -6.12057 -4.16390 0.84348 1.91308 2.47343 2.53999 3.12584 3.27526 3.31016 3.34027 3.38778 3.70415 4.36989 4.39235 4.54525 4.61170 4.71051 4.73983 4.77708 4.95925 5.08502 5.18459 5.24576 5.29055 5.34471 5.41968 5.46955 5.53595 5.65971 5.73011 5.77812 5.91686 6.07288 6.08386 6.61945 6.98454 7.54061 7.60308 7.84931 7.87971 8.16135 8.24373 8.89136 9.48093 10.99381 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.040395 B = 0.002163 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.995738 B =12939.930803 C =13349.592981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C 0.170 3.830 4 N -0.386 5.386 5 O 0.077 5.923 6 C 0.189 3.811 7 C -0.028 4.028 8 C -0.107 4.107 9 C -0.113 4.113 10 C 0.454 3.546 11 O -0.520 6.520 12 O -0.358 6.358 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 N -0.480 5.480 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 -22.859 10.634 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.103 4.103 4 N -0.094 5.094 5 O 0.019 5.981 6 C -0.031 4.031 7 C -0.067 4.067 8 C -0.146 4.146 9 C -0.151 4.151 10 C 0.297 3.703 11 O -0.409 6.409 12 O -0.274 6.274 13 C 0.002 3.998 14 C -0.013 4.013 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.214 5.214 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.062 -23.369 11.144 26.836 hybrid contribution -0.887 0.811 -0.209 1.220 sum 6.175 -22.558 10.935 25.818 Atomic orbital electron populations 1.21748 0.93164 1.02882 1.02883 1.19937 0.96941 0.85620 1.04613 1.25917 1.00284 1.00546 0.83535 1.74636 1.17891 0.92952 1.23956 1.85296 1.60754 1.27174 1.24860 1.28797 0.95507 0.96667 0.82158 1.20306 0.99404 0.88461 0.98535 1.21404 0.96474 0.94798 1.01925 1.21282 0.95695 0.94981 1.03151 1.23459 0.90386 0.81014 0.75459 1.90645 1.28868 1.72174 1.49260 1.86517 1.42011 1.33459 1.65384 1.23642 0.83146 0.92393 1.00573 1.19171 0.98029 0.89134 0.94957 1.20980 0.94110 1.06779 1.34639 0.92278 1.24986 0.96415 0.97443 0.95339 1.69971 1.24278 1.23041 1.35518 0.86468 0.82974 0.80179 0.77670 1.20473 1.21041 1.19732 1.71912 1.18034 1.02100 1.29361 0.92287 0.91824 0.90976 0.88573 0.89144 0.87412 0.86688 0.89895 0.90058 0.87273 0.87291 0.92335 0.92324 0.95347 0.95336 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.03 -0.23 6.56 -27.88 -0.18 -0.42 16 3 C 0.17 1.82 7.47 -156.37 -1.17 0.65 16 4 N -0.39 -4.56 12.16 30.90 0.38 -4.18 16 5 O 0.08 0.84 11.31 18.11 0.20 1.04 16 6 C 0.19 1.80 7.77 -13.05 -0.10 1.70 16 7 C -0.03 -0.17 5.84 -27.88 -0.16 -0.33 16 8 C -0.11 -0.93 4.49 -26.73 -0.12 -1.05 16 9 C -0.11 -1.06 5.81 -27.88 -0.16 -1.22 16 10 C 0.45 7.19 7.96 36.00 0.29 7.48 16 11 O -0.52 -9.77 15.73 -18.75 -0.29 -10.07 16 12 O -0.36 -6.80 10.22 -39.26 -0.40 -7.20 16 13 C 0.07 1.64 5.40 37.16 0.20 1.84 16 14 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 15 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 19 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 N -0.48 -5.33 11.55 -9.87 -0.11 -5.44 16 24 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 36 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -33.83 344.31 -6.81 -40.63 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -5.88 Total: -5.88 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.60 Total: -4.96 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 1.00 Total: -35.04 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.49 Total: -16.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.83 -6.81 -40.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062411050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.685 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds