Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00149 * 2 1 4 4 O 1.20823 * 119.99955 * 4.78667 * 3 2 1 5 5 C 1.50702 * 120.00089 * 184.78135 * 3 2 1 6 6 N 1.46500 * 109.46940 * 186.02076 * 5 3 2 7 7 C 1.36941 * 120.00066 * 84.54302 * 6 5 3 8 8 H 1.07998 * 119.99624 * 165.67069 * 7 6 5 9 9 C 1.38803 * 119.99896 * 345.66977 * 7 6 5 10 10 N 1.31618 * 120.00453 * 0.34037 * 9 7 6 11 11 Si 1.86806 * 119.99961 * 180.34256 * 9 7 6 12 12 H 1.48502 * 109.46795 * 59.99629 * 11 9 7 13 13 H 1.48491 * 109.47381 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46670 * 299.99944 * 11 9 7 15 15 C 1.46498 * 119.99834 * 264.54206 * 6 5 3 16 16 C 1.50704 * 109.47085 * 269.99008 * 15 6 5 17 17 N 1.34472 * 126.17195 * 83.95810 * 16 15 6 18 18 C 1.30256 * 108.70686 * 180.02562 * 17 16 15 19 19 O 1.33965 * 108.75589 * 359.73155 * 18 17 16 20 20 C 1.34339 * 126.16345 * 263.95855 * 16 15 6 21 21 C 1.50697 * 126.44198 * 0.02562 * 20 16 15 22 22 C 1.52994 * 109.47172 * 123.04406 * 21 20 16 23 23 C 1.53002 * 109.47115 * 243.04357 * 21 20 16 24 24 H 1.08997 * 109.47180 * 64.49193 * 1 2 3 25 25 H 1.09005 * 109.47197 * 184.48323 * 1 2 3 26 26 H 1.08997 * 109.47469 * 304.48188 * 1 2 3 27 27 H 1.08997 * 109.47285 * 66.01883 * 5 3 2 28 28 H 1.09007 * 109.46900 * 306.01940 * 5 3 2 29 29 H 0.97000 * 119.99969 * 180.02562 * 10 9 7 30 30 H 1.08993 * 109.47285 * 149.99006 * 15 6 5 31 31 H 1.09001 * 109.47098 * 29.98185 * 15 6 5 32 32 H 1.07993 * 125.61753 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.47451 * 3.04421 * 21 20 16 34 34 H 1.08999 * 109.47268 * 179.97438 * 22 21 20 35 35 H 1.08997 * 109.47056 * 59.99912 * 22 21 20 36 36 H 1.09000 * 109.47397 * 299.99790 * 22 21 20 37 37 H 1.09000 * 109.47280 * 295.20849 * 23 21 20 38 38 H 1.09003 * 109.46858 * 55.20595 * 23 21 20 39 39 H 1.09000 * 109.47154 * 175.20770 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4066 2.2076 0.0873 5 6 3.5623 1.2769 -0.1088 6 7 3.9896 2.6682 0.0576 7 6 4.1753 3.1820 1.3133 8 1 4.7042 4.1147 1.4423 9 6 3.6838 2.5040 2.4202 10 7 3.0450 1.3639 2.2636 11 14 3.9287 3.2096 4.1325 12 1 3.2843 4.5450 4.2143 13 1 3.3146 2.3020 5.1345 14 1 5.3815 3.3432 4.4095 15 6 4.2183 3.5100 -1.1194 16 6 5.6557 3.3852 -1.5546 17 7 6.1662 2.4207 -2.3404 18 6 7.4402 2.6412 -2.4983 19 8 7.7720 3.7507 -1.8248 20 6 6.6581 4.2176 -1.2275 21 6 6.5551 5.4453 -0.3596 22 6 7.5276 5.3225 0.8151 23 6 6.9066 6.6845 -1.1853 24 1 -0.3633 0.4425 -0.9275 25 1 -0.3634 -1.0246 0.0803 26 1 -0.3634 0.5818 0.8471 27 1 3.8756 0.9151 -1.0881 28 1 4.0165 0.6619 0.6682 29 1 2.7012 0.8903 3.0371 30 1 4.0029 4.5490 -0.8705 31 1 3.5642 3.1873 -1.9295 32 1 8.1164 2.0328 -3.0804 33 1 5.5373 5.5379 0.0195 34 1 7.4534 6.2107 1.4426 35 1 8.5453 5.2299 0.4360 36 1 7.2772 4.4397 1.4034 37 1 7.9509 6.6318 -1.4931 38 1 6.2691 6.7253 -2.0685 39 1 6.7501 7.5791 -0.5825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092799466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -38.789338 kcal Electronic energy + Delta-G solvation = -23373.431038 eV Core-core repulsion = 19898.248701 eV Total energy + Delta-G solvation = -3475.182336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.80954 -38.78521 -36.26905 -35.34167 -34.64863 -33.91172 -31.42968 -29.35546 -27.90621 -27.00911 -26.01323 -25.79515 -23.01500 -22.35976 -20.73631 -19.84462 -19.43001 -16.98274 -16.68587 -16.19330 -16.00336 -15.31221 -15.01755 -14.77870 -14.65395 -14.55235 -13.75321 -13.49673 -13.05311 -12.95237 -12.88212 -12.13577 -12.07421 -12.06183 -11.50154 -11.26140 -11.07198 -11.00399 -10.94593 -10.90716 -10.75078 -10.60624 -10.30990 -10.10773 -9.95887 -9.85568 -9.50223 -9.08506 -8.54576 -8.14630 -7.11532 -5.85998 -3.29544 1.98693 3.20758 3.25064 3.34164 3.40194 3.40486 4.07759 4.17980 4.47851 4.62380 4.99187 5.13699 5.27938 5.37881 5.50289 5.52641 5.69897 5.74942 5.87187 5.89390 5.94557 5.96716 6.07396 6.16014 6.18031 6.36032 6.47137 6.49312 6.53274 6.57810 6.60885 6.85010 6.95278 7.36629 7.60855 7.93818 8.20285 8.28925 9.04283 9.54521 9.70154 10.10972 11.19495 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.007025 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.497606 B = 3984.937177 C = 5180.566394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.377 6.377 3 C 0.480 3.520 4 O -0.533 6.533 5 C 0.195 3.805 6 N -0.563 5.563 7 C -0.236 4.236 8 H 0.080 0.920 9 C -0.002 4.002 10 N -0.918 5.918 11 Si 0.919 3.081 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.222 3.778 16 C -0.009 4.009 17 N -0.474 5.474 18 C 0.143 3.857 19 O -0.211 6.211 20 C -0.035 4.035 21 C -0.007 4.007 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.123 0.877 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.240 0.760 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 3.533 -6.815 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.294 6.294 3 C 0.322 3.678 4 O -0.420 6.420 5 C 0.067 3.933 6 N -0.282 5.282 7 C -0.364 4.364 8 H 0.098 0.902 9 C -0.197 4.197 10 N -0.567 5.567 11 Si 0.749 3.251 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.210 1.210 15 C 0.094 3.906 16 C -0.131 4.131 17 N -0.203 5.203 18 C -0.083 4.083 19 O -0.098 6.098 20 C -0.089 4.089 21 C -0.025 4.025 22 C -0.203 4.203 23 C -0.203 4.203 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.140 0.860 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.847 3.272 -6.869 9.595 hybrid contribution 0.188 0.670 1.306 1.480 sum 6.035 3.942 -5.563 9.105 Atomic orbital electron populations 1.22809 0.80377 1.01231 1.00794 1.86538 1.20351 1.36683 1.85823 1.25173 0.92863 0.79880 0.69901 1.90428 1.66913 1.36840 1.47833 1.20442 0.85671 0.87124 1.00102 1.43785 1.75020 1.07996 1.01435 1.19318 1.28861 1.05849 0.82362 0.90196 1.24837 0.98773 0.97367 0.98688 1.69480 1.41932 1.16147 1.29158 0.86090 0.77552 0.78241 0.83227 1.20963 1.21563 1.20985 1.19119 0.85844 0.95804 0.89832 1.22976 1.00553 0.91697 0.97890 1.70328 1.07906 1.25389 1.16697 1.27788 0.93611 0.87986 0.98961 1.84316 1.37122 1.36876 1.51494 1.23082 0.83809 1.00562 1.01425 1.19727 1.02456 0.87707 0.92649 1.21833 0.98383 1.02840 0.97285 1.21874 1.01649 0.96766 1.00001 0.93924 0.90322 0.93092 0.93313 0.85950 0.92919 0.91319 0.92386 0.74415 0.87371 0.92057 0.92856 0.91299 0.92622 0.92448 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.64 101.05 1.08 1.89 16 2 O -0.38 -8.76 10.56 -39.25 -0.41 -9.18 16 3 C 0.48 12.32 5.54 36.01 0.20 12.52 16 4 O -0.53 -15.04 16.00 -18.75 -0.30 -15.34 16 5 C 0.20 4.83 5.59 -5.19 -0.03 4.80 16 6 N -0.56 -13.83 2.03 -175.98 -0.36 -14.18 16 7 C -0.24 -6.11 9.73 -15.06 -0.15 -6.26 16 8 H 0.08 1.95 6.99 -52.49 -0.37 1.59 16 9 C 0.00 -0.04 5.36 -17.43 -0.09 -0.13 16 10 N -0.92 -25.71 7.99 55.49 0.44 -25.27 16 11 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.22 4.69 5.92 -5.19 -0.03 4.65 16 16 C -0.01 -0.17 6.69 -82.81 -0.55 -0.72 16 17 N -0.47 -8.81 11.29 -11.18 -0.13 -8.93 16 18 C 0.14 2.12 13.23 52.09 0.69 2.81 16 19 O -0.21 -3.39 10.77 5.38 0.06 -3.33 16 20 C -0.04 -0.61 5.89 -35.69 -0.21 -0.82 16 21 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 22 C -0.15 -2.08 9.17 37.15 0.34 -1.73 16 23 C -0.15 -1.74 9.18 37.16 0.34 -1.40 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.03 7.98 -51.93 -0.41 0.61 16 27 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 28 H 0.12 3.28 6.27 -51.93 -0.33 2.95 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.07 1.37 6.84 -51.93 -0.36 1.02 16 31 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.24 2.23 8.06 -52.49 -0.42 1.80 16 33 H 0.11 1.73 5.89 -51.93 -0.31 1.43 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -32.45 331.33 -4.99 -37.44 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.54 Total: 2.01 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 1.28 Total: 15.20 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.04 Total: -48.39 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.66 Total: -27.85 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.45 -4.99 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092799466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.349 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds