Wall clock time and date at job start Tue Mar 31 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00084 * 2 1 4 4 C 1.52997 * 109.47021 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47053 * 64.99822 * 4 3 2 6 6 C 1.46504 * 119.99772 * 84.93895 * 5 4 3 7 7 C 1.50699 * 109.47291 * 95.45037 * 6 5 4 8 8 H 1.08001 * 119.99686 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99926 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99975 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99827 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47336 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46823 * 120.00087 * 11 9 7 14 14 H 1.48495 * 109.47407 * 239.99989 * 11 9 7 15 15 C 1.34775 * 120.00173 * 264.65963 * 5 4 3 16 16 O 1.21680 * 119.99984 * 5.55450 * 15 5 4 17 17 C 1.46720 * 120.00184 * 185.55703 * 15 5 4 18 18 O 1.35353 * 126.64118 * 354.75907 * 17 15 5 19 19 C 1.33662 * 107.68321 * 179.87461 * 18 17 15 20 20 C 1.50696 * 125.42408 * 180.14692 * 19 18 17 21 21 N 1.30625 * 109.15461 * 0.39842 * 19 18 17 22 22 C 1.33693 * 108.99153 * 359.75119 * 21 19 18 23 23 C 1.50706 * 126.26916 * 180.02562 * 22 21 19 24 24 H 1.08993 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47242 * 300.00284 * 1 2 3 26 26 H 1.09004 * 109.46952 * 60.00331 * 1 2 3 27 27 H 1.08996 * 109.46870 * 59.99806 * 3 2 1 28 28 H 1.09004 * 109.47002 * 300.00103 * 3 2 1 29 29 H 1.09003 * 109.47127 * 304.99973 * 4 3 2 30 30 H 1.09002 * 109.46767 * 184.99786 * 4 3 2 31 31 H 1.09004 * 109.47104 * 215.45200 * 6 5 4 32 32 H 1.08994 * 109.47155 * 335.44901 * 6 5 4 33 33 H 0.97001 * 120.00051 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47502 * 270.31491 * 20 19 18 35 35 H 1.09006 * 109.47109 * 30.31651 * 20 19 18 36 36 H 1.08999 * 109.47219 * 150.30999 * 20 19 18 37 37 H 1.09002 * 109.46867 * 269.97724 * 23 22 21 38 38 H 1.08994 * 109.47250 * 29.97229 * 23 22 21 39 39 H 1.09001 * 109.47099 * 149.97645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1815 1.3879 -2.4447 7 6 5.6364 1.7663 -2.5504 8 1 6.3381 1.4273 -1.8027 9 6 6.0715 2.5453 -3.6015 10 7 5.2170 2.9576 -4.5122 11 14 7.8748 3.0150 -3.7321 12 1 8.6229 2.4288 -2.5910 13 1 8.4306 2.4950 -5.0072 14 1 8.0046 4.4939 -3.7022 15 6 4.1995 -0.7643 -1.3024 16 8 3.9383 -1.4628 -0.3409 17 6 4.7572 -1.3680 -2.5178 18 8 5.0033 -0.7407 -3.6916 19 6 5.5107 -1.6439 -4.5361 20 6 5.9310 -1.3715 -5.9574 21 7 5.5793 -2.8016 -3.9350 22 6 5.1222 -2.6708 -2.6855 23 6 5.0284 -3.7633 -1.6516 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0902 31 1 3.8875 0.8241 -3.3301 32 1 3.5756 2.2909 -2.3713 33 1 5.5232 3.5053 -5.2519 34 1 5.0830 -1.5297 -6.6238 35 1 6.2735 -0.3403 -6.0437 36 1 6.7405 -2.0474 -6.2328 37 1 4.0564 -4.2511 -1.7257 38 1 5.8166 -4.4959 -1.8245 39 1 5.1440 -3.3330 -0.6568 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094357467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:47 Heat of formation + Delta-G solvation = -56.394881 kcal Electronic energy + Delta-G solvation = -23477.031642 eV Core-core repulsion = 20001.085872 eV Total energy + Delta-G solvation = -3475.945770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.68540 -38.98128 -37.34071 -35.36159 -34.25647 -32.67689 -32.18912 -29.97780 -28.83121 -27.27144 -26.70221 -25.77919 -23.11061 -22.76534 -21.11462 -20.76309 -19.03747 -16.96667 -16.52094 -16.16043 -16.03932 -15.83623 -15.15733 -15.12776 -14.64674 -14.44643 -13.75051 -13.58040 -13.17454 -12.88411 -12.55786 -12.55039 -12.34709 -12.21980 -12.17990 -11.78969 -11.71227 -11.53480 -11.29999 -11.01838 -10.79978 -10.73414 -10.34028 -10.21630 -10.05987 -9.78303 -9.39328 -9.25551 -8.56422 -8.18117 -7.69848 -6.17744 -4.23062 1.59431 3.00950 3.18357 3.20293 3.27555 3.33006 3.81841 3.95685 4.13801 4.32457 4.47944 5.15723 5.28886 5.31213 5.35557 5.44192 5.58967 5.62324 5.67656 5.67972 5.71780 5.79951 5.86721 6.01905 6.04125 6.10472 6.23050 6.29731 6.44563 6.50752 6.69501 6.87366 7.27037 7.41489 7.54648 7.75544 8.05185 8.13990 8.31434 8.77632 8.91671 9.42575 10.89344 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.008230 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.883092 B = 3401.487575 C = 4871.573728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.045 3.955 4 C 0.123 3.877 5 N -0.585 5.585 6 C 0.235 3.765 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.607 3.393 16 O -0.534 6.534 17 C -0.086 4.086 18 O -0.130 6.130 19 C 0.198 3.802 20 C -0.058 4.058 21 N -0.503 5.503 22 C 0.047 3.953 23 C -0.068 4.068 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 -4.600 2.431 6.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.033 4.033 4 C -0.001 4.001 5 N -0.315 5.315 6 C 0.115 3.885 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.208 1.208 15 C 0.394 3.606 16 O -0.415 6.415 17 C -0.142 4.142 18 O -0.013 6.013 19 C -0.007 4.007 20 C -0.115 4.115 21 N -0.234 5.234 22 C -0.078 4.078 23 C -0.125 4.125 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.158 -5.424 2.438 7.256 hybrid contribution 0.550 1.445 -0.083 1.548 sum -3.608 -3.980 2.355 5.865 Atomic orbital electron populations 1.22675 0.82344 1.02188 0.99272 1.88098 1.18402 1.27280 1.95197 1.23041 0.95145 0.85131 0.99986 1.21394 0.91351 0.99497 0.87817 1.48016 1.63727 1.06680 1.13051 1.19611 0.97215 0.90314 0.81316 1.21424 0.93373 1.32024 1.09622 0.92401 1.24842 0.97567 0.95641 0.95345 1.69934 1.34058 1.35910 1.12922 0.86576 0.85236 0.78321 0.78210 1.19784 1.20749 1.20836 1.16363 0.77763 0.82423 0.84046 1.90752 1.53441 1.61667 1.35592 1.22914 1.10852 0.92594 0.87858 1.85065 1.59389 1.37541 1.19352 1.26365 0.95828 0.82779 0.95772 1.20232 1.02423 1.04703 0.84140 1.70213 1.22137 1.24873 1.06224 1.21842 0.99283 0.93721 0.92925 1.20191 1.02068 0.94423 0.95822 0.90141 0.94679 0.94574 0.93030 0.93032 0.89659 0.88733 0.93488 0.94458 0.92726 0.89263 0.88741 0.88767 0.90904 0.91445 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.60 9.90 -35.79 -0.35 -6.95 16 3 C 0.04 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.23 5.80 -4.04 -0.02 2.20 16 5 N -0.58 -12.77 2.43 -176.59 -0.43 -13.20 16 6 C 0.23 5.67 4.78 -5.19 -0.02 5.65 16 7 C -0.53 -13.67 8.10 -34.44 -0.28 -13.95 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -23.85 13.29 55.43 0.74 -23.12 16 11 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.61 13.74 7.37 -12.84 -0.09 13.65 16 16 O -0.53 -12.20 13.87 4.65 0.06 -12.13 16 17 C -0.09 -1.93 6.70 -36.84 -0.25 -2.17 16 18 O -0.13 -2.97 6.69 4.40 0.03 -2.95 16 19 C 0.20 3.92 8.32 -12.79 -0.11 3.81 16 20 C -0.06 -0.85 10.51 36.00 0.38 -0.47 16 21 N -0.50 -10.12 11.26 -7.07 -0.08 -10.20 16 22 C 0.05 0.97 7.16 -82.46 -0.59 0.38 16 23 C -0.07 -1.15 9.82 36.01 0.35 -0.80 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.55 7.35 -51.93 -0.38 1.17 16 30 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 31 H 0.05 1.23 5.69 -51.93 -0.30 0.93 16 32 H 0.04 0.92 8.03 -51.93 -0.42 0.51 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.57 6.58 -51.93 -0.34 1.23 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -31.03 332.90 -5.05 -36.08 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.63 Total: -0.42 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 0.62 Total: 12.48 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.23 Total: -46.52 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.26 Total: -22.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.03 -5.05 -36.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094357467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.310 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds