Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48500 * 109.46921 * 269.99983 * 3 2 1 5 5 H 1.48493 * 109.47192 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.46959 * 150.00105 * 3 2 1 7 7 C 1.37873 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99867 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46878 * 179.97438 * 11 10 9 13 13 C 1.38281 * 119.93814 * 90.00718 * 12 11 10 14 14 C 1.38131 * 120.05550 * 179.70096 * 13 12 11 15 15 C 1.38759 * 119.94402 * 0.26955 * 14 13 12 16 16 O 1.35889 * 120.05807 * 179.97438 * 15 14 13 17 17 C 1.35881 * 117.99889 * 247.44645 * 16 15 14 18 18 C 1.38756 * 120.06323 * 5.84298 * 17 16 15 19 19 C 1.38137 * 119.94287 * 179.72322 * 18 17 16 20 20 C 1.38266 * 120.05789 * 0.55538 * 19 18 17 21 21 C 1.38274 * 120.11727 * 359.72416 * 20 19 18 22 22 C 1.38133 * 120.05647 * 359.97438 * 21 20 19 23 23 C 1.38748 * 119.88325 * 0.02562 * 15 14 13 24 24 C 1.38136 * 119.94416 * 359.97438 * 23 15 14 25 25 H 0.97006 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46582 * 60.00098 * 9 7 2 27 27 H 1.08998 * 109.47449 * 300.00703 * 9 7 2 28 28 H 1.09002 * 109.47263 * 60.00513 * 10 9 7 29 29 H 1.09003 * 109.47673 * 299.99963 * 10 9 7 30 30 H 1.09002 * 109.46853 * 60.00032 * 11 10 9 31 31 H 1.08996 * 109.47052 * 299.99831 * 11 10 9 32 32 H 1.07999 * 119.96701 * 359.96992 * 13 12 11 33 33 H 1.08001 * 120.02523 * 180.29438 * 14 13 12 34 34 H 1.08003 * 120.02685 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.96770 * 180.25261 * 19 18 17 36 36 H 1.07995 * 119.94096 * 179.70067 * 20 19 18 37 37 H 1.08002 * 119.96982 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.02904 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.03113 * 180.02562 * 23 15 14 40 40 H 1.08004 * 119.97464 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6365 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 6 6.0537 -4.0574 -0.0027 13 6 6.2839 -4.7076 -1.2013 14 6 6.7501 -6.0078 -1.2046 15 6 6.9822 -6.6634 -0.0039 16 8 7.4404 -7.9428 -0.0044 17 6 6.6114 -8.9174 0.4531 18 6 5.2998 -8.6135 0.7885 19 6 4.4576 -9.6074 1.2480 20 6 4.9239 -10.9018 1.3846 21 6 6.2322 -11.2063 1.0565 22 6 7.0767 -10.2174 0.5908 23 6 6.7446 -6.0108 1.1973 24 6 6.2783 -4.7106 1.1951 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6805 0.8889 27 1 3.8745 -0.6800 -0.8910 28 1 3.6578 -3.1498 -0.8925 29 1 3.6584 -3.1511 0.8875 30 1 5.9147 -2.1234 0.8882 31 1 5.9148 -2.1220 -0.8918 32 1 6.1031 -4.1967 -2.1355 33 1 6.9343 -6.5135 -2.1409 34 1 4.9363 -7.6017 0.6859 35 1 3.4354 -9.3721 1.5053 36 1 4.2652 -11.6764 1.7486 37 1 6.5940 -12.2182 1.1646 38 1 8.0986 -10.4557 0.3350 39 1 6.9248 -6.5187 2.1332 40 1 6.0936 -4.2020 2.1298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098128849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = 2.252131 kcal Electronic energy + Delta-G solvation = -20277.625214 eV Core-core repulsion = 17215.071833 eV Total energy + Delta-G solvation = -3062.553381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04362 -39.02309 -37.60865 -34.69917 -32.51771 -31.29440 -31.10297 -30.59287 -29.76766 -26.95309 -23.97599 -23.12859 -22.64326 -22.45388 -20.92377 -20.07178 -18.80693 -17.10961 -16.71765 -16.29387 -16.05490 -15.46999 -14.80715 -14.51590 -14.31505 -14.18390 -13.73032 -13.66685 -13.48307 -13.39731 -13.14216 -12.53419 -12.26276 -11.89685 -11.83149 -11.71589 -11.57057 -11.19269 -10.97281 -10.89869 -10.70617 -9.93741 -9.74739 -9.70285 -9.24423 -9.20490 -9.04098 -8.68044 -8.54525 -8.23104 -6.04826 -4.02894 0.99358 1.10887 1.25457 1.29954 3.00572 3.29809 3.37360 3.40658 3.55203 3.73075 4.44443 4.63148 4.69727 4.79624 4.83334 4.93691 4.98140 5.11754 5.16440 5.29022 5.34247 5.36084 5.36574 5.66721 5.70523 5.77825 5.87318 5.96593 6.06681 6.14025 6.19107 6.27873 6.28696 6.31197 6.39620 6.56419 6.65254 6.73888 6.80411 6.89867 7.29573 7.42078 7.46582 7.79039 8.53699 9.00358 9.57697 11.08747 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.002951 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.774054 B = 9484.448001 C =10227.846302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.095 4.095 11 C -0.089 4.089 12 C -0.063 4.063 13 C -0.103 4.103 14 C -0.118 4.118 15 C 0.066 3.934 16 O -0.258 6.258 17 C 0.123 3.877 18 C -0.192 4.192 19 C -0.081 4.081 20 C -0.156 4.156 21 C -0.086 4.086 22 C -0.150 4.150 23 C -0.135 4.135 24 C -0.103 4.103 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.562 -19.074 1.553 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.133 4.133 11 C -0.127 4.127 12 C -0.063 4.063 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.025 3.975 16 O -0.170 6.170 17 C 0.079 3.921 18 C -0.211 4.211 19 C -0.099 4.099 20 C -0.175 4.175 21 C -0.104 4.104 22 C -0.169 4.169 23 C -0.154 4.154 24 C -0.121 4.121 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.596 -18.986 1.486 24.615 hybrid contribution 0.173 0.976 0.040 0.992 sum 15.769 -18.010 1.527 23.986 Atomic orbital electron populations 1.69920 1.06326 1.26866 1.51253 1.25049 0.94737 0.99208 0.94607 0.86766 0.80354 0.83597 0.78490 1.20315 1.21424 1.18989 1.21158 0.89584 0.94432 1.50680 0.91104 1.19597 0.97115 0.92249 0.96238 1.21460 0.90538 0.99904 1.01404 1.20867 0.98313 0.90720 1.02757 1.20277 0.96016 0.97293 0.92705 1.21006 0.98815 0.93839 0.98450 1.21092 0.99699 0.95859 0.96969 1.18595 1.02284 0.83039 0.93627 1.84365 1.39904 1.13440 1.79315 1.19230 0.89224 0.88408 0.95189 1.21462 0.93301 1.01272 1.05063 1.21039 0.99534 0.92536 0.96810 1.21113 0.96209 0.96800 1.03350 1.20952 0.93470 0.98642 0.97362 1.20426 1.01104 0.90165 1.05194 1.21376 1.00815 0.95909 0.97273 1.20991 0.98887 0.93823 0.98434 0.92756 0.96620 0.97049 0.92651 0.92665 0.91137 0.91110 0.85012 0.85318 0.84948 0.85520 0.85856 0.85354 0.85210 0.85626 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 10 C -0.10 -1.83 5.13 -26.73 -0.14 -1.96 16 11 C -0.09 -1.35 5.34 -27.88 -0.15 -1.50 16 12 C -0.06 -0.86 5.14 -104.59 -0.54 -1.40 16 13 C -0.10 -1.32 9.69 -39.61 -0.38 -1.70 16 14 C -0.12 -1.46 9.99 -39.43 -0.39 -1.85 16 15 C 0.07 0.86 4.73 -39.20 -0.19 0.67 16 16 O -0.26 -3.36 10.00 -3.53 -0.04 -3.40 16 17 C 0.12 1.48 6.54 -39.20 -0.26 1.22 16 18 C -0.19 -2.28 8.79 -39.43 -0.35 -2.63 16 19 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 20 C -0.16 -1.39 10.04 -39.56 -0.40 -1.79 16 21 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 22 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 23 C -0.14 -1.68 8.34 -39.43 -0.33 -2.01 16 24 C -0.10 -1.33 9.69 -39.61 -0.38 -1.71 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.66 6.18 -52.48 -0.32 1.34 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -31.40 339.02 -9.80 -41.20 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.75 Total: 0.12 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -5.23 Total: -32.78 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 0.77 Total: -27.24 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.04 Total: -3.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.40 -9.80 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.452 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds