Wall clock time and date at job start Tue Mar 31 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48500 * 109.46921 * 269.99983 * 3 2 1 5 5 H 1.48493 * 109.47192 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.46959 * 150.00105 * 3 2 1 7 7 C 1.37873 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99867 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46878 * 179.97438 * 11 10 9 13 13 C 1.38281 * 119.93814 * 90.00718 * 12 11 10 14 14 C 1.38131 * 120.05550 * 179.70096 * 13 12 11 15 15 C 1.38759 * 119.94402 * 0.26955 * 14 13 12 16 16 O 1.35889 * 120.05807 * 179.97438 * 15 14 13 17 17 C 1.35881 * 117.99889 * 247.44645 * 16 15 14 18 18 C 1.38756 * 120.06323 * 5.84298 * 17 16 15 19 19 C 1.38137 * 119.94287 * 179.72322 * 18 17 16 20 20 C 1.38266 * 120.05789 * 0.55538 * 19 18 17 21 21 C 1.38274 * 120.11727 * 359.72416 * 20 19 18 22 22 C 1.38133 * 120.05647 * 359.97438 * 21 20 19 23 23 C 1.38748 * 119.88325 * 0.02562 * 15 14 13 24 24 C 1.38136 * 119.94416 * 359.97438 * 23 15 14 25 25 H 0.97006 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46582 * 60.00098 * 9 7 2 27 27 H 1.08998 * 109.47449 * 300.00703 * 9 7 2 28 28 H 1.09002 * 109.47263 * 60.00513 * 10 9 7 29 29 H 1.09003 * 109.47673 * 299.99963 * 10 9 7 30 30 H 1.09002 * 109.46853 * 60.00032 * 11 10 9 31 31 H 1.08996 * 109.47052 * 299.99831 * 11 10 9 32 32 H 1.07999 * 119.96701 * 359.96992 * 13 12 11 33 33 H 1.08001 * 120.02523 * 180.29438 * 14 13 12 34 34 H 1.08003 * 120.02685 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.96770 * 180.25261 * 19 18 17 36 36 H 1.07995 * 119.94096 * 179.70067 * 20 19 18 37 37 H 1.08002 * 119.96982 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.02904 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.03113 * 180.02562 * 23 15 14 40 40 H 1.08004 * 119.97464 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6365 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 6 6.0537 -4.0574 -0.0027 13 6 6.2839 -4.7076 -1.2013 14 6 6.7501 -6.0078 -1.2046 15 6 6.9822 -6.6634 -0.0039 16 8 7.4404 -7.9428 -0.0044 17 6 6.6114 -8.9174 0.4531 18 6 5.2998 -8.6135 0.7885 19 6 4.4576 -9.6074 1.2480 20 6 4.9239 -10.9018 1.3846 21 6 6.2322 -11.2063 1.0565 22 6 7.0767 -10.2174 0.5908 23 6 6.7446 -6.0108 1.1973 24 6 6.2783 -4.7106 1.1951 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6805 0.8889 27 1 3.8745 -0.6800 -0.8910 28 1 3.6578 -3.1498 -0.8925 29 1 3.6584 -3.1511 0.8875 30 1 5.9147 -2.1234 0.8882 31 1 5.9148 -2.1220 -0.8918 32 1 6.1031 -4.1967 -2.1355 33 1 6.9343 -6.5135 -2.1409 34 1 4.9363 -7.6017 0.6859 35 1 3.4354 -9.3721 1.5053 36 1 4.2652 -11.6764 1.7486 37 1 6.5940 -12.2182 1.1646 38 1 8.0986 -10.4557 0.3350 39 1 6.9248 -6.5187 2.1332 40 1 6.0936 -4.2020 2.1298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098128849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:52 Heat of formation + Delta-G solvation = -12.626153 kcal Electronic energy + Delta-G solvation = -20278.270385 eV Core-core repulsion = 17215.071833 eV Total energy + Delta-G solvation = -3063.198552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94775 -39.93857 -38.49938 -36.29528 -34.41166 -32.25324 -32.12037 -31.67874 -30.81282 -28.45557 -25.39233 -24.03694 -23.67180 -23.39269 -22.17690 -21.58246 -19.68099 -18.89752 -17.93597 -17.27869 -16.85580 -16.66233 -16.11771 -15.74256 -15.58603 -15.28711 -14.87570 -14.71181 -14.55241 -14.44616 -14.35237 -14.15493 -13.42447 -13.27172 -13.06939 -12.95516 -12.55415 -12.52586 -12.37338 -11.91349 -11.85522 -11.75235 -11.46044 -11.38372 -11.30431 -10.75540 -10.05550 -9.96762 -9.64563 -9.15183 -8.28727 -6.33124 0.02960 0.29865 0.36914 0.43684 1.37257 1.39334 1.51533 2.08979 2.37411 2.73544 2.79967 3.06911 3.81335 3.85239 3.85797 3.91368 3.96792 4.23580 4.26085 4.31837 4.39251 4.46673 4.47635 4.51583 4.55910 4.71228 4.89579 4.92272 5.04538 5.05915 5.10519 5.11828 5.26067 5.30033 5.35161 5.45494 5.54501 5.55626 5.56261 5.66781 5.72546 5.73410 5.95519 6.29903 6.55184 6.75569 7.31657 8.88411 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.002951 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.774054 B = 9484.448001 C =10227.846302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.027 0.973 9 C -0.013 4.013 10 C -0.088 4.088 11 C -0.077 4.077 12 C -0.079 4.079 13 C -0.104 4.104 14 C -0.124 4.124 15 C 0.063 3.937 16 O -0.269 6.269 17 C 0.099 3.901 18 C -0.210 4.210 19 C -0.093 4.093 20 C -0.154 4.154 21 C -0.081 4.081 22 C -0.156 4.156 23 C -0.138 4.138 24 C -0.106 4.106 25 H 0.266 0.734 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.674 -19.640 1.744 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.050 4.050 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.079 4.079 13 C -0.122 4.122 14 C -0.142 4.142 15 C 0.021 3.979 16 O -0.181 6.181 17 C 0.057 3.943 18 C -0.228 4.228 19 C -0.111 4.111 20 C -0.172 4.172 21 C -0.099 4.099 22 C -0.175 4.175 23 C -0.156 4.156 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.726 -19.574 1.679 26.460 hybrid contribution -0.564 0.951 -0.001 1.106 sum 17.162 -18.623 1.677 25.380 Atomic orbital electron populations 1.70087 1.08470 1.28171 1.52863 1.26100 0.95655 1.03803 0.94113 0.85593 0.79582 0.77812 0.79271 1.19087 1.21184 1.16519 1.21557 0.92519 0.92909 1.50248 0.95487 1.19567 0.93511 0.95151 0.96794 1.21294 0.93770 0.96982 1.00487 1.20682 0.94826 0.92008 1.03892 1.20210 0.97405 0.96825 0.93419 1.21184 0.98323 0.93973 0.98753 1.21273 0.99581 0.95862 0.97508 1.18779 1.01823 0.83290 0.94015 1.84325 1.40435 1.13565 1.79808 1.19489 0.89357 0.88948 0.96519 1.21440 0.93838 1.01086 1.06479 1.21276 0.99940 0.93054 0.96866 1.21481 0.96839 0.96695 1.02221 1.21370 0.93052 0.99745 0.95738 1.20745 1.02141 0.89648 1.04957 1.21466 1.00702 0.95820 0.97627 1.21146 0.98546 0.93985 0.98721 0.92549 0.95880 0.95961 0.93633 0.93725 0.90108 0.89906 0.83730 0.83962 0.86519 0.84574 0.83218 0.82095 0.83867 0.84824 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 3 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 7 C -0.53 -31.16 9.66 25.60 0.25 -30.92 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.09 -3.33 5.13 30.59 0.16 -3.17 16 11 C -0.08 -2.20 5.34 29.85 0.16 -2.04 16 12 C -0.08 -2.08 5.14 -19.85 -0.10 -2.18 16 13 C -0.10 -2.57 9.69 22.25 0.22 -2.36 16 14 C -0.12 -3.00 9.99 22.37 0.22 -2.78 16 15 C 0.06 1.61 4.73 22.52 0.11 1.71 16 16 O -0.27 -6.96 10.00 -35.53 -0.36 -7.31 16 17 C 0.10 2.36 6.54 22.52 0.15 2.51 16 18 C -0.21 -5.01 8.79 22.37 0.20 -4.81 16 19 C -0.09 -1.84 10.04 22.25 0.22 -1.62 16 20 C -0.15 -2.40 10.04 22.29 0.22 -2.17 16 21 C -0.08 -1.19 10.04 22.25 0.22 -0.96 16 22 C -0.16 -2.93 9.99 22.37 0.22 -2.70 16 23 C -0.14 -3.38 8.34 22.37 0.19 -3.19 16 24 C -0.11 -2.65 9.69 22.25 0.22 -2.44 16 25 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 26 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 27 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 31 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 32 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.12 3.07 6.18 -2.91 -0.02 3.05 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.18 339.02 6.01 -63.17 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.95 Total: 15.73 kcal Atomic # 6 Polarization: -60.40 SS G_CDS: 3.23 Total: -57.16 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.36 Total: -7.31 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -69.18 6.01 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098128849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.544 kcal (2) G-P(sol) polarization free energy of solvation -69.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds