Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36933 * 119.99681 * 2 1 4 4 H 1.08006 * 119.99501 * 202.03305 * 3 2 1 5 5 C 1.38815 * 120.00462 * 22.03649 * 3 2 1 6 6 N 1.31612 * 119.99744 * 11.26276 * 5 3 2 7 7 Si 1.86805 * 119.99869 * 191.26569 * 5 3 2 8 8 H 1.48493 * 109.47477 * 89.99626 * 7 5 3 9 9 H 1.48501 * 109.46630 * 209.99782 * 7 5 3 10 10 H 1.48498 * 109.47213 * 329.99589 * 7 5 3 11 11 C 1.46499 * 119.99543 * 180.02562 * 2 1 3 12 12 N 1.46497 * 109.46804 * 269.99623 * 11 2 1 13 13 N 1.40162 * 126.35377 * 270.24220 * 12 11 2 14 14 C 1.29385 * 108.16772 * 180.32149 * 13 12 11 15 15 N 1.37491 * 108.80780 * 0.08366 * 14 13 12 16 16 C 1.34806 * 108.28540 * 359.33748 * 15 14 13 17 17 S 1.71200 * 126.28308 * 181.00613 * 16 15 14 18 18 C 1.46732 * 125.94273 * 178.87969 * 15 14 13 19 19 C 1.52987 * 109.52539 * 27.92422 * 18 15 14 20 20 C 1.52717 * 109.79621 * 270.50760 * 19 18 15 21 21 C 1.52489 * 110.55304 * 61.78159 * 20 19 18 22 22 C 1.50907 * 125.96683 * 180.34609 * 14 13 12 23 23 H 1.08997 * 109.46917 * 274.66226 * 1 2 3 24 24 H 1.09003 * 109.47017 * 34.65482 * 1 2 3 25 25 H 1.08995 * 109.47401 * 154.65914 * 1 2 3 26 26 H 0.96998 * 119.99898 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.46668 * 150.00116 * 11 2 1 28 28 H 1.08997 * 109.47136 * 29.99936 * 11 2 1 29 29 H 1.08994 * 109.46322 * 267.91155 * 18 15 14 30 30 H 1.08996 * 109.45306 * 147.93420 * 18 15 14 31 31 H 1.08998 * 109.41590 * 150.40648 * 19 18 15 32 32 H 1.09000 * 109.36195 * 30.56881 * 19 18 15 33 33 H 1.09003 * 109.25796 * 301.51199 * 20 19 18 34 34 H 1.08996 * 109.23093 * 182.04256 * 20 19 18 35 35 H 1.09001 * 109.46256 * 273.49565 * 21 20 19 36 36 H 1.08996 * 109.45980 * 153.53557 * 21 20 19 37 37 H 1.09002 * 109.51690 * 346.61971 * 22 14 13 38 38 H 1.09001 * 109.51295 * 106.72496 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1706 1.2200 -0.3509 5 6 1.5317 2.3442 0.4510 6 7 0.3783 2.2722 1.0809 7 14 2.3371 4.0051 0.1638 8 1 1.8762 4.5610 -1.1337 9 1 1.9625 4.9330 1.2610 10 1 3.8127 3.8415 0.1361 11 6 2.1975 -1.2688 -0.0006 12 7 2.4416 -1.6922 1.3805 13 7 3.5555 -1.3641 2.1655 14 6 3.4147 -1.9283 3.3213 15 7 2.2324 -2.6300 3.3310 16 6 1.6338 -2.4667 2.1342 17 16 0.1252 -3.1213 1.6582 18 6 1.7142 -3.4290 4.4473 19 6 2.2400 -2.8638 5.7681 20 6 3.5694 -3.5272 6.1218 21 6 4.6161 -3.2319 5.0530 22 6 4.3799 -1.8331 4.4774 23 1 -0.3633 0.0835 1.0242 24 1 -0.3633 0.8454 -0.5844 25 1 -0.3634 -0.9287 -0.4398 26 1 -0.0537 3.0815 1.3958 27 1 3.1499 -1.1382 -0.5144 28 1 1.6083 -2.0281 -0.5147 29 1 2.0434 -4.4623 4.3378 30 1 0.6249 -3.3926 4.4448 31 1 1.5161 -3.0585 6.5593 32 1 2.3871 -1.7884 5.6679 33 1 3.4249 -4.6051 6.1954 34 1 3.9174 -3.1447 7.0813 35 1 4.5389 -3.9706 4.2551 36 1 5.6108 -3.2790 5.4961 37 1 5.3258 -1.4182 4.1290 38 1 3.9612 -1.1870 5.2490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = 108.262398 kcal Electronic energy + Delta-G solvation = -20911.753330 eV Core-core repulsion = 17917.993257 eV Total energy + Delta-G solvation = -2993.760072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12761 -37.77397 -35.84708 -34.04635 -32.79042 -31.02572 -29.93810 -27.67146 -26.13543 -25.29113 -24.54012 -22.80866 -21.33935 -20.37624 -20.07114 -17.50841 -17.08196 -16.36179 -15.96420 -15.62737 -15.17356 -14.93879 -14.39907 -14.27351 -13.83642 -13.48252 -13.15422 -12.85123 -12.31586 -12.08482 -12.02390 -11.49868 -11.36987 -11.22220 -11.09000 -10.97003 -10.85362 -10.77060 -10.57561 -10.50226 -10.21657 -10.16461 -10.01598 -9.54312 -8.84141 -7.34496 -6.94276 -6.84335 -6.03507 -3.51792 1.89663 2.14641 2.26405 3.06784 3.09938 3.27523 3.29661 3.31502 4.25477 4.31574 4.42168 4.52553 4.53965 4.84975 5.00619 5.08168 5.18073 5.24629 5.30482 5.39385 5.46571 5.58840 5.60034 5.69262 5.72465 5.89594 5.94809 6.05369 6.13850 6.22850 6.84533 6.88989 7.19988 7.34233 7.57413 7.76643 7.95994 8.05930 8.88295 9.45342 9.92216 10.96223 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.006137 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.069253 B = 4561.313192 C = 5340.668109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.540 5.540 3 C -0.275 4.275 4 H 0.081 0.919 5 C 0.016 3.984 6 N -0.882 5.882 7 Si 0.917 3.083 8 H -0.281 1.281 9 H -0.288 1.288 10 H -0.275 1.275 11 C 0.341 3.659 12 N -0.347 5.347 13 N -0.271 5.271 14 C 0.238 3.762 15 N -0.495 5.495 16 C 0.459 3.541 17 S -0.651 6.651 18 C 0.119 3.881 19 C -0.142 4.142 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.038 4.038 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.780 -9.530 10.140 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.254 5.254 3 C -0.405 4.405 4 H 0.098 0.902 5 C -0.186 4.186 6 N -0.523 5.523 7 Si 0.745 3.255 8 H -0.208 1.208 9 H -0.214 1.214 10 H -0.200 1.200 11 C 0.134 3.866 12 N -0.148 5.148 13 N -0.092 5.092 14 C -0.041 4.041 15 N -0.197 5.197 16 C 0.095 3.905 17 S -0.524 6.524 18 C -0.004 4.004 19 C -0.179 4.179 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.078 4.078 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.303 -9.024 9.098 15.269 hybrid contribution 0.523 0.955 0.785 1.342 sum 8.826 -8.069 9.883 15.514 Atomic orbital electron populations 1.21129 0.80263 0.97059 1.00711 1.45216 1.03805 1.01101 1.75286 1.19451 0.98750 0.84473 1.37845 0.90156 1.25282 0.97153 0.99452 0.96760 1.70144 1.16783 1.28120 1.37238 0.86079 0.79091 0.82646 0.77697 1.20754 1.21376 1.19965 1.22734 0.97303 0.88497 0.78103 1.54811 1.11214 1.34864 1.13876 1.77182 1.10798 1.19696 1.01512 1.24547 0.88863 0.93984 0.96744 1.46552 1.17579 1.42031 1.13513 1.24137 0.94470 0.88485 0.83454 1.92965 1.07579 1.67867 1.84033 1.21947 1.01732 0.93982 0.82693 1.22010 0.97917 1.01865 0.96148 1.21577 0.94379 1.01175 0.98897 1.21569 0.99890 0.95696 0.98810 1.20354 0.96624 0.99032 0.91764 0.94119 0.93195 0.95774 0.92944 0.89380 0.88249 0.89729 0.87519 0.89377 0.90178 0.91197 0.91065 0.91419 0.90123 0.88038 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.95 9.01 59.85 0.54 4.49 16 2 N -0.54 -13.72 3.17 -184.85 -0.59 -14.31 16 3 C -0.27 -7.36 9.68 -15.06 -0.15 -7.51 16 4 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 5 C 0.02 0.44 5.14 -17.43 -0.09 0.35 16 6 N -0.88 -25.35 10.56 55.49 0.59 -24.76 16 7 Si 0.92 21.17 29.57 -169.99 -5.03 16.14 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 C 0.34 7.48 6.81 -63.76 -0.43 7.04 16 12 N -0.35 -7.57 3.86 -65.19 -0.25 -7.82 16 13 N -0.27 -5.42 12.53 33.05 0.41 -5.01 16 14 C 0.24 3.85 6.90 -153.95 -1.06 2.79 16 15 N -0.49 -8.42 3.08 -114.31 -0.35 -8.77 16 16 C 0.46 9.78 7.86 -86.76 -0.68 9.10 16 17 S -0.65 -15.25 29.65 -107.50 -3.19 -18.43 16 18 C 0.12 1.51 6.15 -3.92 -0.02 1.49 16 19 C -0.14 -1.30 5.54 -26.88 -0.15 -1.45 16 20 C -0.12 -0.85 5.66 -27.14 -0.15 -1.00 16 21 C -0.12 -0.95 5.68 -26.95 -0.15 -1.11 16 22 C -0.04 -0.40 5.54 -27.73 -0.15 -0.55 16 23 H 0.04 1.18 7.40 -51.93 -0.38 0.80 16 24 H 0.05 1.34 7.19 -51.93 -0.37 0.97 16 25 H 0.02 0.58 7.84 -51.93 -0.41 0.17 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.09 1.79 8.03 -51.93 -0.42 1.37 16 28 H 0.10 2.10 7.42 -51.93 -0.39 1.72 16 29 H 0.08 0.94 7.82 -51.93 -0.41 0.54 16 30 H 0.11 1.53 7.70 -51.93 -0.40 1.13 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.86 5.66 -51.93 -0.29 0.56 16 33 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.62 7.84 -51.93 -0.41 0.22 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.94 6.32 -51.93 -0.33 0.61 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -33.64 317.72 -11.58 -45.22 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.46 Total: -0.68 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -2.51 Total: 13.64 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.19 Total: -60.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: -15.25 SS G_CDS: -3.19 Total: -18.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.64 -11.58 -45.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.484 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds