Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37317 * 125.82880 * 2 1 4 4 N 1.29410 * 108.83672 * 180.26277 * 3 2 1 5 5 N 1.40175 * 108.13293 * 359.97438 * 4 3 2 6 6 C 1.46503 * 126.35402 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47586 * 269.98052 * 6 5 4 8 8 C 1.46897 * 111.00325 * 169.99819 * 7 6 5 9 9 C 1.50698 * 109.46970 * 284.39654 * 8 7 6 10 10 H 1.07999 * 120.00165 * 4.78259 * 9 8 7 11 11 C 1.37880 * 119.99958 * 184.77636 * 9 8 7 12 12 N 1.31518 * 119.99824 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00329 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47021 * 89.99928 * 13 11 9 15 15 H 1.48500 * 109.47216 * 210.00230 * 13 11 9 16 16 H 1.48504 * 109.47040 * 330.00372 * 13 11 9 17 17 C 1.46900 * 110.99754 * 293.95389 * 7 6 5 18 18 C 1.53007 * 109.46981 * 165.98718 * 17 7 6 19 19 C 1.52996 * 117.49726 * 245.05991 * 18 17 7 20 20 C 1.52999 * 117.49699 * 176.40199 * 18 17 7 21 21 C 1.34816 * 125.82830 * 180.29805 * 2 1 3 22 22 S 1.71194 * 126.30271 * 359.70676 * 21 2 1 23 23 H 1.08993 * 109.46982 * 269.69571 * 1 2 3 24 24 H 1.08999 * 109.46884 * 29.69746 * 1 2 3 25 25 H 1.08998 * 109.46621 * 149.69932 * 1 2 3 26 26 H 1.08005 * 125.58212 * 0.21562 * 3 2 1 27 27 H 1.09007 * 109.46596 * 29.98267 * 6 5 4 28 28 H 1.09001 * 109.46773 * 149.97398 * 6 5 4 29 29 H 1.09001 * 109.46652 * 44.39677 * 8 7 6 30 30 H 1.08997 * 109.47131 * 164.39620 * 8 7 6 31 31 H 0.96997 * 120.00248 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.47041 * 285.98782 * 17 7 6 33 33 H 1.09000 * 109.47121 * 45.99080 * 17 7 6 34 34 H 1.08994 * 115.54767 * 30.73366 * 18 17 7 35 35 H 1.09001 * 117.50104 * 0.02562 * 19 18 17 36 36 H 1.09002 * 117.49733 * 145.01714 * 19 18 17 37 37 H 1.08995 * 117.50350 * 214.97715 * 20 18 17 38 38 H 1.09008 * 117.49876 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2689 1.1133 0.0000 4 7 3.5065 0.7351 -0.0056 5 7 3.5344 -0.6663 -0.0089 6 6 4.7313 -1.5111 -0.0149 7 7 5.1265 -1.7907 -1.4018 8 6 6.4473 -2.4314 -1.4539 9 6 7.5162 -1.4003 -1.1987 10 1 7.2400 -0.3888 -0.9398 11 6 8.8469 -1.7482 -1.2954 12 7 9.1833 -2.9798 -1.6110 13 14 10.1719 -0.4702 -0.9784 14 1 10.5314 -0.4769 0.4624 15 1 11.3734 -0.7911 -1.7899 16 1 9.6641 0.8733 -1.3556 17 6 4.1158 -2.6119 -2.0817 18 6 4.3733 -2.5925 -3.5898 19 6 3.3138 -1.9386 -4.4790 20 6 3.4736 -3.4609 -4.4713 21 6 2.2542 -1.0930 -0.0057 22 16 1.7289 -2.7224 -0.0071 23 1 -0.3633 -0.0055 1.0276 24 1 -0.3633 0.8927 -0.5091 25 1 -0.3632 -0.8873 -0.5185 26 1 1.9246 2.1370 0.0033 27 1 5.5432 -0.9944 0.4971 28 1 4.5168 -2.4487 0.4980 29 1 6.5039 -3.2096 -0.6927 30 1 6.5976 -2.8745 -2.4383 31 1 10.1193 -3.2247 -1.6787 32 1 4.1748 -3.6370 -1.7162 33 1 3.1235 -2.2097 -1.8774 34 1 5.4164 -2.4845 -3.8872 35 1 2.4335 -1.5218 -3.9896 36 1 3.6598 -1.4007 -5.3616 37 1 3.9245 -3.9240 -5.3489 38 1 2.6978 -4.0458 -3.9769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103459508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = 135.183870 kcal Electronic energy + Delta-G solvation = -20469.627555 eV Core-core repulsion = 17477.034886 eV Total energy + Delta-G solvation = -2992.592670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.64061 -37.90803 -36.08264 -34.75692 -32.84992 -31.97059 -28.57944 -27.61491 -26.54527 -24.19688 -22.99939 -22.53526 -21.99239 -21.28925 -19.42768 -18.14129 -16.93891 -16.54634 -16.31136 -15.88099 -15.44565 -15.03448 -14.84255 -14.29059 -13.71083 -13.28390 -13.23684 -13.08994 -12.76840 -12.07519 -11.96180 -11.51510 -11.48912 -11.18496 -11.14604 -10.97261 -10.78835 -10.72138 -10.55755 -10.47036 -9.97255 -9.75495 -9.46788 -9.24905 -8.48115 -7.63846 -7.51266 -7.23976 -6.07079 -4.09865 1.19143 1.41312 1.69424 2.41058 2.60536 3.29432 3.36233 3.40634 4.12243 4.23587 4.38506 4.40599 4.60841 4.74623 4.87782 5.14914 5.27291 5.29607 5.38148 5.42353 5.59847 5.62668 5.87379 5.96849 6.06307 6.12046 6.20123 6.29369 6.44222 6.48138 6.50769 6.85651 7.05196 7.18796 7.27464 7.73966 7.92962 8.05256 8.39360 8.97243 9.54901 11.02923 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.005800 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.162706 B = 4826.491763 C = 5735.704048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.502 5.502 3 C 0.229 3.771 4 N -0.254 5.254 5 N -0.348 5.348 6 C 0.310 3.690 7 N -0.542 5.542 8 C 0.197 3.803 9 C -0.513 4.513 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.078 3.922 18 C -0.131 4.131 19 C -0.180 4.180 20 C -0.183 4.183 21 C 0.457 3.543 22 S -0.599 6.599 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.239 0.761 27 H 0.124 0.876 28 H 0.084 0.916 29 H -0.003 1.003 30 H 0.048 0.952 31 H 0.262 0.738 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.754 8.274 1.481 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.204 5.204 3 C -0.072 4.072 4 N -0.073 5.073 5 N -0.141 5.141 6 C 0.101 3.899 7 N -0.268 5.268 8 C 0.073 3.927 9 C -0.552 4.552 10 H 0.082 0.918 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.050 4.050 18 C -0.150 4.150 19 C -0.217 4.217 20 C -0.221 4.221 21 C 0.095 3.905 22 S -0.472 6.472 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.255 0.745 27 H 0.142 0.858 28 H 0.102 0.898 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.751 7.917 1.207 17.670 hybrid contribution 0.260 0.671 0.424 0.835 sum -15.491 8.588 1.632 17.788 Atomic orbital electron populations 1.22157 0.72972 1.05887 1.04650 1.46173 1.09775 1.04387 1.60043 1.26560 0.85871 0.95317 0.99405 1.77353 1.17682 0.92336 1.19887 1.49975 1.06073 1.02698 1.55322 1.22445 0.81643 0.91886 0.93908 1.62046 1.04997 1.48329 1.11412 1.19794 0.81434 0.93483 0.97966 1.21156 0.90032 0.96755 1.47243 0.91815 1.24967 0.98686 0.95414 0.95246 1.69952 1.17644 1.17556 1.48241 0.86506 0.81109 0.81767 0.78102 1.20696 1.21245 1.19788 1.22020 0.95596 0.96127 0.91292 1.22352 0.96955 1.02711 0.92941 1.22865 1.01318 0.95137 1.02425 1.22913 1.03553 0.93239 1.02377 1.23912 0.84131 0.94085 0.88369 1.93375 1.83525 0.95290 1.74983 0.89777 0.88851 0.87612 0.74512 0.85818 0.89830 0.98539 0.93427 0.92788 0.94121 0.90628 0.86921 0.90003 0.89546 0.89256 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.90 59.85 0.65 1.20 16 2 N -0.50 -5.49 3.14 -126.65 -0.40 -5.88 16 3 C 0.23 2.19 12.65 -89.15 -1.13 1.07 16 4 N -0.25 -3.73 12.53 29.86 0.37 -3.36 16 5 N -0.35 -5.94 3.60 -64.99 -0.23 -6.17 16 6 C 0.31 6.05 5.82 -63.32 -0.37 5.68 16 7 N -0.54 -11.70 4.53 -239.98 -1.09 -12.79 16 8 C 0.20 4.98 4.56 -4.98 -0.02 4.96 16 9 C -0.51 -13.93 8.61 -34.44 -0.30 -14.22 16 10 H 0.06 1.73 7.65 -52.49 -0.40 1.33 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 13 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.08 1.56 4.48 -3.82 -0.02 1.55 16 18 C -0.13 -2.48 5.57 -90.62 -0.50 -2.98 16 19 C -0.18 -2.92 10.18 -26.70 -0.27 -3.19 16 20 C -0.18 -2.93 10.25 -26.70 -0.27 -3.20 16 21 C 0.46 7.22 6.64 -86.74 -0.58 6.64 16 22 S -0.60 -11.07 27.27 -107.50 -2.93 -14.00 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.11 0.85 7.64 -51.93 -0.40 0.46 16 26 H 0.24 0.81 8.06 -52.48 -0.42 0.39 16 27 H 0.12 2.48 7.31 -51.93 -0.38 2.11 16 28 H 0.08 1.65 7.67 -51.93 -0.40 1.25 16 29 H 0.00 -0.08 8.00 -51.93 -0.42 -0.50 16 30 H 0.05 1.29 6.30 -51.93 -0.33 0.96 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.08 1.49 4.12 -51.77 -0.21 1.28 16 34 H 0.11 2.38 6.72 -51.93 -0.35 2.03 16 35 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.43 8.14 -51.92 -0.42 1.00 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -33.69 328.95 -11.90 -45.59 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.39 Total: 1.61 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.90 Total: -0.98 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.61 Total: -53.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -2.93 Total: -14.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.69 -11.90 -45.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.776 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds