Wall clock time and date at job start Tue Mar 31 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 N 1.46499 * 109.47014 * 169.99803 * 14 12 2 16 16 N 1.40178 * 126.35256 * 90.02897 * 15 14 12 17 17 C 1.29417 * 108.13269 * 179.97438 * 16 15 14 18 18 N 1.37319 * 108.83552 * 359.97438 * 17 16 15 19 19 C 1.46504 * 125.82716 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.50028 * 8.77294 * 19 18 17 21 21 C 1.52991 * 117.49918 * 300.11034 * 19 18 17 22 22 C 1.34812 * 108.34135 * 359.73618 * 18 17 16 23 23 S 1.71206 * 126.30165 * 180.30430 * 22 18 17 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 29 29 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 30 30 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 31 31 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 32 32 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 33 33 H 1.07997 * 125.57732 * 179.97438 * 17 16 15 34 34 H 1.09006 * 115.54709 * 154.43734 * 19 18 17 35 35 H 1.09008 * 117.49744 * 359.97438 * 20 19 18 36 36 H 1.08993 * 117.50405 * 145.01930 * 20 19 18 37 37 H 1.08999 * 117.50195 * 214.98078 * 21 19 18 38 38 H 1.09001 * 117.50395 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 7 2.4572 -0.4993 -3.5467 16 7 1.9551 -1.4801 -4.4133 17 6 2.8690 -1.7499 -5.2890 18 7 3.9723 -0.9738 -5.0319 19 6 5.2219 -0.9794 -5.7967 20 6 5.2461 -1.7729 -7.1046 21 6 5.9951 -2.2971 -5.8769 22 6 3.7069 -0.2013 -3.9594 23 16 4.7627 0.9442 -3.2492 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 0.3489 -1.9549 -1.3693 29 1 1.8133 -2.5258 -2.2044 30 1 1.7058 -2.6222 -0.4302 31 1 0.6814 0.1052 -2.6087 32 1 2.1025 1.1188 -2.2604 33 1 2.7787 -2.4679 -6.0907 34 1 5.8016 -0.0572 -5.7568 35 1 4.3324 -2.2912 -7.3959 36 1 5.8420 -1.3731 -7.9250 37 1 7.0836 -2.2419 -5.8901 38 1 5.5745 -3.1598 -5.3603 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103460588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:15 Heat of formation + Delta-G solvation = 124.923092 kcal Electronic energy + Delta-G solvation = -20267.565120 eV Core-core repulsion = 17274.527510 eV Total energy + Delta-G solvation = -2993.037610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.81654 -39.43600 -38.37548 -35.31178 -34.05026 -33.45326 -30.62114 -28.61681 -27.31693 -26.16244 -25.08433 -23.95271 -23.36542 -22.50773 -21.29628 -19.32703 -18.34553 -17.87947 -17.44601 -17.43238 -16.76982 -16.41090 -16.18551 -15.63238 -15.27382 -14.83299 -14.50570 -14.15362 -13.59897 -13.33485 -13.15974 -12.97671 -12.81284 -12.69666 -12.59944 -12.50973 -12.45264 -12.40458 -12.13008 -12.04771 -11.81755 -11.64685 -11.04442 -10.84582 -10.50885 -9.17352 -8.92710 -8.80988 -8.12718 -6.23447 -0.09083 0.19377 0.69742 1.13402 1.41529 1.44454 1.51188 1.53348 2.41907 2.66392 3.06415 3.15986 3.19690 3.37630 3.67529 3.77481 3.90196 3.93195 4.11510 4.29783 4.38407 4.59282 4.70594 4.71588 4.77098 4.85435 4.90923 5.01007 5.01927 5.07053 5.13883 5.41173 5.46835 5.64930 5.71248 6.04301 6.12293 6.33940 6.49218 6.84747 7.44647 8.93211 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.004347 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.059566 B = 6439.963125 C = 6651.806711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.227 3.773 3 H 0.010 0.990 4 C -0.515 4.515 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.554 5.554 13 C 0.046 3.954 14 C 0.316 3.684 15 N -0.365 5.365 16 N -0.298 5.298 17 C 0.265 3.735 18 N -0.459 5.459 19 C 0.027 3.973 20 C -0.128 4.128 21 C -0.169 4.169 22 C 0.479 3.521 23 S -0.675 6.675 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.263 0.737 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.300 0.700 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -9.902 -23.350 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.121 3.879 3 H 0.028 0.972 4 C -0.553 4.553 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.194 1.194 12 N -0.279 5.279 13 C -0.102 4.102 14 C 0.106 3.894 15 N -0.155 5.155 16 N -0.117 5.117 17 C -0.033 4.033 18 N -0.157 5.157 19 C -0.075 4.075 20 C -0.165 4.165 21 C -0.207 4.207 22 C 0.114 3.886 23 S -0.549 6.549 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.315 0.685 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.308 -9.360 -22.342 24.448 hybrid contribution -0.332 -0.209 0.784 0.877 sum 2.976 -9.569 -21.559 23.774 Atomic orbital electron populations 1.22242 0.99014 0.99910 1.00669 1.19003 0.90625 0.92886 0.85402 0.97195 1.21191 1.30906 1.12541 0.90708 0.93064 1.25617 0.95296 0.95776 1.01604 1.69977 1.37531 1.23869 1.24251 0.85603 0.78432 0.78838 0.78685 1.20489 1.20650 1.19358 1.62021 1.60342 1.03844 1.01690 1.22154 0.97032 0.90040 1.00938 1.22099 0.94054 0.94500 0.78772 1.49569 1.10565 1.30935 1.24471 1.77254 1.23450 1.07303 1.03738 1.27621 0.80475 0.95935 0.99301 1.45838 1.15771 1.30800 1.23250 1.22408 0.84752 1.00915 0.99427 1.23751 1.03934 0.98669 0.90133 1.23630 1.01220 0.94498 1.01383 1.23187 0.87817 0.91138 0.86416 1.93501 1.51469 1.38901 1.71042 0.95139 0.91371 0.94079 0.92776 0.94914 0.92381 0.92346 0.89680 0.88096 0.68522 0.84311 0.84905 0.84440 0.86006 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.22 71.98 0.59 -6.91 16 2 C 0.23 11.73 2.31 44.17 0.10 11.83 16 3 H 0.01 0.59 7.93 -2.39 -0.02 0.57 16 4 C -0.51 -29.08 7.97 25.60 0.20 -28.88 16 5 H 0.05 2.94 7.10 -2.91 -0.02 2.92 16 6 C 0.02 0.91 5.30 84.66 0.45 1.35 16 7 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 8 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.55 -24.71 4.84 -913.85 -4.42 -29.13 16 13 C 0.05 1.82 8.71 127.69 1.11 2.94 16 14 C 0.32 12.19 5.52 170.81 0.94 13.13 16 15 N -0.36 -12.21 3.34 -359.54 -1.20 -13.41 16 16 N -0.30 -7.38 11.46 -59.43 -0.68 -8.06 16 17 C 0.27 4.04 11.96 179.83 2.15 6.19 16 18 N -0.46 -10.02 3.07 -508.58 -1.56 -11.58 16 19 C 0.03 0.41 6.53 44.99 0.29 0.71 16 20 C -0.13 -0.47 9.98 30.62 0.31 -0.16 16 21 C -0.17 -1.55 10.40 30.62 0.32 -1.24 16 22 C 0.48 16.36 7.86 178.99 1.41 17.76 16 23 S -0.68 -29.85 29.75 -56.49 -1.68 -31.53 16 24 H 0.03 1.24 6.91 -2.39 -0.02 1.23 16 25 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 26 H 0.04 1.85 6.33 -2.38 -0.02 1.83 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.03 1.22 6.21 -2.38 -0.01 1.21 16 29 H 0.06 2.05 6.64 -2.39 -0.02 2.04 16 30 H 0.06 2.49 6.86 -2.39 -0.02 2.48 16 31 H 0.09 2.99 7.06 -2.39 -0.02 2.97 16 32 H 0.10 4.30 7.47 -2.39 -0.02 4.28 16 33 H 0.30 0.13 7.01 -2.91 -0.02 0.11 16 34 H 0.14 2.72 7.87 -2.38 -0.02 2.71 16 35 H 0.13 -0.26 6.80 -2.38 -0.02 -0.28 16 36 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.12 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -79.07 322.39 1.66 -77.41 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.07 Total: 5.54 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 7.88 Total: 16.73 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -7.63 Total: -115.05 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -29.85 SS G_CDS: -1.68 Total: -31.53 kcal Total: -79.07 1.66 -77.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.332 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds