Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99882 * 2 1 3 5 5 H 1.08005 * 119.99734 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00116 * 60.00349 * 4 2 1 7 7 N 1.31516 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47157 * 120.00251 * 8 6 4 11 11 H 1.48502 * 109.47214 * 239.99759 * 8 6 4 12 12 N 1.46906 * 109.46958 * 120.00119 * 2 1 3 13 13 C 1.46898 * 110.99888 * 176.04575 * 12 2 1 14 14 C 1.46902 * 110.99573 * 299.99941 * 12 2 1 15 15 N 1.46500 * 109.46888 * 169.99839 * 14 12 2 16 16 N 1.40174 * 126.35554 * 90.02230 * 15 14 12 17 17 C 1.29414 * 108.13808 * 180.02562 * 16 15 14 18 18 N 1.37320 * 108.83337 * 359.97438 * 17 16 15 19 19 C 1.46501 * 125.82512 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49960 * 8.77301 * 19 18 17 21 21 C 1.53002 * 117.49847 * 300.10820 * 19 18 17 22 22 C 1.34819 * 108.34178 * 359.73995 * 18 17 16 23 23 S 1.71199 * 126.30216 * 180.30734 * 22 18 17 24 24 H 1.09002 * 109.46781 * 59.99952 * 1 2 3 25 25 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47598 * 300.00150 * 1 2 3 27 27 H 0.96998 * 120.00296 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 29 29 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 30 30 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 31 31 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 32 32 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 33 33 H 1.08002 * 125.58036 * 180.02562 * 17 16 15 34 34 H 1.09000 * 115.54706 * 154.44681 * 19 18 17 35 35 H 1.08993 * 117.50004 * 359.97438 * 20 19 18 36 36 H 1.08999 * 117.49871 * 145.02238 * 20 19 18 37 37 H 1.08995 * 117.49519 * 214.98003 * 21 19 18 38 38 H 1.08997 * 117.49919 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5485 -0.0264 2.4211 15 7 1.8491 -0.8670 3.5826 16 7 3.0213 -0.8348 4.3506 17 6 2.9147 -1.7230 5.2858 18 7 1.6993 -2.3505 5.1648 19 6 1.1954 -3.4182 6.0322 20 6 1.9980 -3.7413 7.2940 21 6 2.0112 -4.7102 6.1089 22 6 1.0464 -1.8119 4.1154 23 16 -0.5126 -2.2488 3.5590 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7082 1.1609 -3.4844 28 1 3.9186 0.2050 1.1592 29 1 3.8207 -1.3118 2.0859 30 1 3.8029 -1.3532 0.3068 31 1 2.0518 0.9345 2.5281 32 1 0.4721 0.1324 2.3563 33 1 3.6595 -1.9353 6.0386 34 1 0.1103 -3.5039 6.0901 35 1 2.9012 -3.1598 7.4786 36 1 1.4410 -4.0400 8.1820 37 1 1.4629 -5.6459 6.2179 38 1 2.9226 -4.7660 5.5138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = 145.501044 kcal Electronic energy + Delta-G solvation = -20293.662000 eV Core-core repulsion = 17301.516717 eV Total energy + Delta-G solvation = -2992.145283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.66753 -38.15989 -37.02257 -33.73186 -32.60828 -32.08019 -29.17410 -27.38364 -24.96902 -24.41045 -23.83756 -22.94036 -22.47918 -21.45302 -19.68448 -18.31582 -16.69697 -16.48485 -16.30232 -16.14853 -15.30246 -15.09716 -14.85475 -14.04900 -14.03971 -13.53324 -12.86523 -12.51505 -12.19621 -12.08076 -12.00813 -11.96696 -11.37977 -11.11518 -11.03329 -11.02422 -10.90650 -10.73982 -10.61816 -10.19600 -10.08478 -9.99276 -9.89713 -8.93641 -8.44354 -7.51279 -7.34064 -7.21342 -6.03072 -4.07782 1.24189 1.45900 1.59710 2.52107 2.54215 3.21216 3.30336 3.38389 3.42668 3.93518 4.16601 4.29830 4.34054 4.40072 4.63920 4.87883 4.91229 5.06328 5.29451 5.33685 5.44738 5.50873 5.66373 5.75413 6.03549 6.14368 6.26278 6.46105 6.66472 6.84161 7.03776 7.09554 7.22394 7.45502 7.60694 7.80587 8.10891 8.25375 8.45582 8.96269 9.56870 11.03704 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027757 B = 0.004322 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.522164 B = 6476.691431 C = 6614.923590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.221 3.779 3 H 0.004 0.996 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.540 5.540 13 C 0.038 3.962 14 C 0.301 3.699 15 N -0.359 5.359 16 N -0.274 5.274 17 C 0.232 3.768 18 N -0.477 5.477 19 C 0.076 3.924 20 C -0.173 4.173 21 C -0.172 4.172 22 C 0.475 3.525 23 S -0.572 6.572 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.009 0.991 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.233 0.767 34 H 0.160 0.840 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 -6.083 20.358 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.116 3.884 3 H 0.021 0.979 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.212 1.212 12 N -0.266 5.266 13 C -0.111 4.111 14 C 0.091 3.909 15 N -0.152 5.152 16 N -0.093 5.093 17 C -0.068 4.068 18 N -0.178 5.178 19 C -0.028 4.028 20 C -0.211 4.211 21 C -0.211 4.211 22 C 0.116 3.884 23 S -0.444 6.444 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.177 0.823 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.689 -5.844 19.316 20.719 hybrid contribution 1.225 0.024 -0.223 1.246 sum 5.914 -5.821 19.093 20.818 Atomic orbital electron populations 1.21874 0.96740 1.00753 0.99878 1.19295 0.92919 0.91790 0.84348 0.97879 1.21090 1.31310 1.12362 0.89401 0.91791 1.24900 0.95096 0.95057 0.98990 1.69895 1.36651 1.22962 1.23479 0.86427 0.78615 0.79533 0.82752 1.19800 1.20887 1.21152 1.62044 1.10075 1.53026 1.01504 1.22243 0.87950 0.99531 1.01328 1.22550 1.03175 0.86919 0.78226 1.49823 1.09777 1.30608 1.24981 1.77184 1.06838 1.20489 1.04785 1.26284 0.89698 0.91539 0.99265 1.45619 1.14459 1.31991 1.25743 1.22043 0.99466 0.87714 0.93562 1.23493 1.02201 1.02668 0.92755 1.23527 1.02615 0.94463 1.00490 1.23774 0.94987 0.85242 0.84376 1.93361 0.99527 1.76666 1.74862 0.89428 0.93650 0.97227 0.92912 0.96414 0.94053 0.90138 0.91705 0.85203 0.75068 0.82258 0.87938 0.86480 0.86597 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.76 37.16 0.33 -3.05 16 2 C 0.22 5.59 2.06 -68.86 -0.14 5.45 16 3 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 4 C -0.50 -13.81 7.93 -34.44 -0.27 -14.08 16 5 H 0.06 1.77 6.39 -52.48 -0.34 1.44 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.54 -11.96 4.76 -240.20 -1.14 -13.10 16 13 C 0.04 0.77 9.14 60.06 0.55 1.32 16 14 C 0.30 5.79 5.76 -63.31 -0.36 5.42 16 15 N -0.36 -6.17 3.34 -64.99 -0.22 -6.39 16 16 N -0.27 -3.85 11.46 29.86 0.34 -3.51 16 17 C 0.23 2.33 11.96 -89.15 -1.07 1.27 16 18 N -0.48 -5.77 3.07 -112.10 -0.34 -6.12 16 19 C 0.08 0.66 6.53 -67.93 -0.44 0.22 16 20 C -0.17 -0.78 9.98 -26.69 -0.27 -1.05 16 21 C -0.17 -1.09 10.40 -26.69 -0.28 -1.37 16 22 C 0.48 8.10 7.86 -86.73 -0.68 7.42 16 23 S -0.57 -11.76 29.75 -107.50 -3.20 -14.96 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.77 6.64 -51.93 -0.34 0.43 16 30 H 0.08 1.74 6.23 -51.93 -0.32 1.42 16 31 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 32 H 0.13 2.64 5.37 -51.93 -0.28 2.36 16 33 H 0.23 0.99 7.01 -52.49 -0.37 0.62 16 34 H 0.16 1.54 7.87 -51.93 -0.41 1.13 16 35 H 0.10 0.30 6.80 -51.93 -0.35 -0.05 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -33.55 324.12 -11.95 -45.50 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.14 Total: -1.26 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.73 Total: 3.14 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.74 Total: -53.78 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -11.76 SS G_CDS: -3.20 Total: -14.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.55 -11.95 -45.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.003 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds