Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99890 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99900 * 3 2 1 6 6 H 1.48493 * 109.47123 * 149.99810 * 3 2 1 7 7 C 1.37876 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 N 1.46500 * 109.47473 * 179.97438 * 16 15 13 18 18 C 1.33875 * 122.76488 * 269.71158 * 17 16 15 19 19 O 1.21230 * 125.39200 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.20750 * 179.83865 * 18 17 16 21 21 C 1.54230 * 103.55426 * 0.38916 * 20 18 17 22 22 C 1.33875 * 122.75903 * 89.99982 * 17 16 15 23 23 O 1.21226 * 125.40090 * 359.97438 * 22 17 16 24 24 H 0.96996 * 120.00667 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 26 26 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 27 27 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 28 28 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 29 29 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 30 30 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 31 31 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 33 33 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 34 34 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 35 35 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 36 36 H 1.08998 * 110.79380 * 241.77795 * 20 18 17 37 37 H 1.09002 * 110.54273 * 118.87508 * 20 18 17 38 38 H 1.08995 * 110.60329 * 241.25892 * 21 20 18 39 39 H 1.08997 * 110.60287 * 118.29489 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0218 -2.6363 0.0010 11 6 5.5518 -2.6362 0.0009 12 7 6.0401 -4.0174 0.0014 13 6 7.3653 -4.2635 0.0020 14 8 8.1533 -3.3417 0.0016 15 6 7.8677 -5.6843 0.0019 16 6 9.3977 -5.6842 0.0020 17 7 9.8862 -7.0654 0.0026 18 6 10.1330 -7.7461 1.1286 19 8 9.9883 -7.3184 2.2536 20 6 10.6181 -9.1350 0.7744 21 6 10.6182 -9.1355 -0.7679 22 6 10.1278 -7.7487 -1.1230 23 8 9.9770 -7.3242 -2.2484 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6798 0.8911 26 1 3.8752 -0.6801 -0.8889 27 1 3.6588 -3.1499 -0.8892 28 1 3.6581 -3.1503 0.8907 29 1 5.9150 -2.1224 0.8910 30 1 5.9150 -2.1223 -0.8890 31 1 5.4099 -4.7547 0.0021 32 1 7.5040 -6.1983 0.8917 33 1 7.5048 -6.1980 -0.8883 34 1 9.7610 -5.1703 -0.8879 35 1 9.7610 -5.1704 0.8920 36 1 9.9352 -9.8929 1.1583 37 1 11.6252 -9.2978 1.1582 38 1 9.9354 -9.8937 -1.1512 39 1 11.6258 -9.2960 -1.1513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -118.833636 kcal Electronic energy + Delta-G solvation = -21130.427431 eV Core-core repulsion = 17651.774113 eV Total energy + Delta-G solvation = -3478.653317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.32192 -39.65187 -38.99617 -36.34152 -35.66528 -34.53402 -33.35140 -31.68560 -30.75684 -27.35877 -26.68372 -24.88737 -22.84482 -22.63906 -20.81654 -19.98349 -19.79543 -17.96658 -17.41160 -16.93255 -16.92184 -16.49881 -15.83295 -15.67038 -15.05488 -14.69510 -14.63955 -14.46046 -14.37882 -14.14002 -13.53084 -13.32870 -13.18499 -12.81272 -12.67963 -12.04467 -11.95042 -11.93354 -11.56538 -11.11107 -11.08586 -10.90547 -10.48456 -10.34655 -10.22046 -9.99536 -9.79758 -9.59022 -9.24144 -8.92483 -8.56478 -6.07247 -4.06136 1.04042 2.00970 2.22169 2.61523 3.28770 3.30961 3.38498 3.42760 3.55699 3.69541 3.87564 4.26318 4.43680 4.46378 4.60615 4.69078 4.88794 5.00840 5.02717 5.08520 5.15475 5.26740 5.29673 5.53429 5.59115 5.63179 5.98891 6.30465 6.37370 6.42122 6.65376 6.76627 6.84650 7.21041 7.30009 7.34583 7.54115 7.75159 8.22215 8.49134 8.96347 9.54920 11.05950 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039313 B = 0.002432 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.053535 B =11509.409285 C =11538.507447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.723 5.723 13 C 0.516 3.484 14 O -0.545 6.545 15 C -0.157 4.157 16 C 0.114 3.886 17 N -0.575 5.575 18 C 0.524 3.476 19 O -0.477 6.477 20 C -0.157 4.157 21 C -0.157 4.157 22 C 0.523 3.477 23 O -0.477 6.477 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.865 -22.282 0.032 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.374 5.374 13 C 0.301 3.699 14 O -0.422 6.422 15 C -0.198 4.198 16 C -0.007 4.007 17 N -0.319 5.319 18 C 0.312 3.688 19 O -0.348 6.348 20 C -0.197 4.197 21 C -0.197 4.197 22 C 0.312 3.688 23 O -0.348 6.348 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 23.097 -20.984 0.035 31.206 hybrid contribution -0.138 0.594 -0.023 0.610 sum 22.959 -20.390 0.012 30.706 Atomic orbital electron populations 1.69909 1.06314 1.26981 1.50973 1.25032 0.94758 0.99258 0.94450 0.86770 0.80401 0.83502 0.78598 1.20235 1.21348 1.18895 1.21090 0.89292 0.94514 1.51138 0.91017 1.19505 0.97292 0.91442 0.96683 1.21709 0.90561 1.01107 1.01757 1.21685 0.96217 0.81006 1.02047 1.46150 1.06561 1.10210 1.74493 1.20213 0.82807 0.90485 0.76404 1.90719 1.55292 1.46329 1.49901 1.21933 0.96615 0.96068 1.05166 1.21509 0.93138 0.79569 1.06473 1.46849 1.59422 1.16148 1.09466 1.20893 0.75688 0.88356 0.83824 1.90820 1.48698 1.74015 1.21239 1.22485 1.05929 0.95332 0.95939 1.22489 1.05873 0.95378 0.95933 1.20898 0.75728 0.88317 0.83833 1.90819 1.48662 1.74089 1.21199 0.92679 0.96286 0.96728 0.92096 0.92067 0.91668 0.91661 0.76540 0.88311 0.88307 0.87822 0.87820 0.85986 0.86104 0.86006 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.72 -9.74 5.56 -60.30 -0.33 -10.07 16 13 C 0.52 7.11 7.83 -10.98 -0.09 7.02 16 14 O -0.54 -9.56 15.98 5.56 0.09 -9.47 16 15 C -0.16 -1.55 6.02 -27.88 -0.17 -1.71 16 16 C 0.11 1.16 4.84 -4.04 -0.02 1.14 16 17 N -0.58 -4.63 2.55 -115.34 -0.29 -4.92 16 18 C 0.52 3.86 8.08 -11.09 -0.09 3.77 16 19 O -0.48 -5.38 17.47 5.60 0.10 -5.28 16 20 C -0.16 -0.37 7.03 -26.94 -0.19 -0.56 16 21 C -0.16 -0.37 7.03 -26.94 -0.19 -0.56 16 22 C 0.52 3.86 8.08 -11.08 -0.09 3.77 16 23 O -0.48 -5.38 17.48 5.60 0.10 -5.28 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.40 4.28 8.47 -40.82 -0.35 3.94 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.16 7.79 -51.93 -0.40 0.75 16 35 H 0.10 1.16 7.78 -51.93 -0.40 0.76 16 36 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 38 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 LS Contribution 336.77 15.07 5.07 5.07 Total: -1.00 -36.76 336.77 -6.44 -43.19 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.73 Total: -2.22 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.54 Total: -1.15 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.14 Total: -42.05 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.28 Total: -20.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.76 -6.44 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.639 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds