Wall clock time and date at job start Tue Mar 31 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.47356 * 89.97326 * 8 7 6 10 10 C 1.50696 * 109.47356 * 179.97438 * 9 8 7 11 11 O 1.20825 * 119.99934 * 359.97438 * 10 9 8 12 12 O 1.34229 * 119.99914 * 180.02562 * 10 9 8 13 13 C 1.45200 * 116.99699 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46848 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.47314 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99423 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00460 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99534 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47409 * 89.99751 * 19 17 15 21 21 H 1.48498 * 109.46821 * 210.00048 * 19 17 15 22 22 H 1.48504 * 109.47100 * 329.99298 * 19 17 15 23 23 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 24 24 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 25 25 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 26 26 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 28 28 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 30 30 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 32 32 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 33 33 H 1.09001 * 109.46572 * 300.00364 * 9 8 7 34 34 H 1.09004 * 109.46725 * 59.99596 * 9 8 7 35 35 H 1.09002 * 109.47506 * 299.99949 * 13 12 10 36 36 H 1.09005 * 109.47275 * 59.99902 * 13 12 10 37 37 H 1.09003 * 109.47257 * 299.99772 * 14 13 12 38 38 H 1.08998 * 109.47475 * 60.00174 * 14 13 12 39 39 H 0.97000 * 119.99925 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 6 2.9236 -4.4688 3.2709 10 6 3.7366 -5.6180 3.8088 11 8 4.9169 -5.4746 4.0237 12 8 3.1497 -6.8013 4.0481 13 6 3.9942 -7.8633 4.5651 14 6 3.1555 -9.1256 4.7742 15 6 4.0318 -10.2278 5.3114 16 1 5.0820 -10.0460 5.4857 17 6 3.4930 -11.4683 5.5793 18 7 2.2142 -11.6897 5.3664 19 14 4.5791 -12.8341 6.2458 20 1 4.5777 -12.7880 7.7300 21 1 4.0574 -14.1479 5.7907 22 1 5.9657 -12.6523 5.7462 23 8 2.8035 -1.8104 1.2544 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 0.0005 31 1 4.6251 -3.4868 2.3870 32 1 4.2579 -2.9674 4.0495 33 1 2.1245 -4.2288 3.9724 34 1 2.4916 -4.7481 2.3099 35 1 4.7932 -8.0712 3.8534 36 1 4.4267 -7.5531 5.5163 37 1 2.3568 -8.9174 5.4862 38 1 2.7227 -9.4360 3.8232 39 1 1.8352 -12.5625 5.5545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177450186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:41 Heat of formation + Delta-G solvation = -78.353648 kcal Electronic energy + Delta-G solvation = -20840.303887 eV Core-core repulsion = 17363.405913 eV Total energy + Delta-G solvation = -3476.897973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.52047 -40.11440 -36.66237 -36.42741 -36.26920 -34.26675 -33.37408 -30.58485 -29.90565 -27.76181 -26.43316 -24.81618 -24.62118 -22.54494 -21.28788 -21.08505 -20.40701 -17.92307 -17.52539 -17.33487 -16.47207 -16.31938 -15.85443 -15.70204 -15.10933 -14.59068 -14.50217 -14.23473 -13.80953 -13.09095 -13.07341 -12.80960 -12.59085 -12.52238 -12.44155 -12.34453 -12.08439 -11.85318 -11.83193 -11.60203 -11.27102 -11.09115 -11.05957 -10.79716 -10.73220 -10.36360 -9.81679 -9.70469 -9.63116 -9.32980 -8.47016 -6.12959 -4.17583 0.83380 1.87202 2.09271 2.43095 3.00115 3.27000 3.33131 3.36816 3.51872 4.01750 4.26768 4.36718 4.41014 4.41606 4.54330 4.70036 4.93201 4.95735 5.08812 5.11056 5.23646 5.23891 5.25519 5.29833 5.32655 5.41367 5.50636 5.60522 5.65613 5.73807 6.03179 6.04195 6.58795 6.90129 7.51773 7.58417 7.82759 8.03722 8.08433 8.20965 8.87936 9.46998 10.98504 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.046805 B = 0.002246 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.076847 B =12466.018496 C =12776.913514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.004 3.996 3 C -0.146 4.146 4 C 0.164 3.836 5 N -0.282 5.282 6 N -0.281 5.281 7 C 0.168 3.832 8 C -0.012 4.012 9 C -0.115 4.115 10 C 0.461 3.539 11 O -0.518 6.518 12 O -0.355 6.355 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 O -0.223 6.223 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 23.960 -12.525 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 C -0.203 4.203 4 C -0.047 4.047 5 N -0.129 5.129 6 N -0.128 5.128 7 C -0.042 4.042 8 C -0.051 4.051 9 C -0.153 4.153 10 C 0.304 3.696 11 O -0.407 6.407 12 O -0.271 6.271 13 C 0.003 3.997 14 C -0.014 4.014 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 O -0.102 6.102 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.221 24.453 -11.403 27.072 hybrid contribution 1.099 -1.548 -0.557 1.978 sum -1.122 22.905 -11.959 25.863 Atomic orbital electron populations 1.21885 0.91599 1.03185 1.03746 1.19770 0.97126 0.95368 0.89384 1.21876 1.01622 0.93099 1.03753 1.28096 0.92678 0.85544 0.98422 1.74347 1.19024 1.21115 0.98393 1.74451 1.09355 1.02162 1.26810 1.27904 0.99599 0.99741 0.76986 1.19972 0.95115 0.86190 1.03807 1.21277 0.98935 0.90354 1.04768 1.23113 0.86832 0.84450 0.75200 1.90653 1.17127 1.83734 1.49232 1.86524 1.44814 1.20667 1.75051 1.23694 0.93622 0.85033 0.97396 1.19183 0.95661 0.88090 0.98423 1.20973 0.95541 0.95617 1.44392 0.92225 1.24993 0.95160 0.98671 0.95384 1.69975 1.11657 1.23276 1.47888 0.86458 0.80557 0.80989 0.79225 1.20456 1.21046 1.19720 1.84805 1.54752 1.39491 1.31127 0.90962 0.90469 0.91952 0.88017 0.90471 0.90974 0.92103 0.87307 0.85868 0.86729 0.87222 0.92161 0.92117 0.95299 0.95333 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.18 37.16 0.34 -0.42 16 2 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 3 C -0.15 -0.72 9.18 37.16 0.34 -0.38 16 4 C 0.16 1.66 6.99 -12.94 -0.09 1.57 16 5 N -0.28 -3.56 12.22 32.55 0.40 -3.17 16 6 N -0.28 -3.77 12.22 32.55 0.40 -3.37 16 7 C 0.17 1.92 7.73 -12.94 -0.10 1.82 16 8 C -0.01 -0.12 5.13 -27.88 -0.14 -0.27 16 9 C -0.11 -1.26 5.79 -27.88 -0.16 -1.42 16 10 C 0.46 7.30 7.96 36.00 0.29 7.59 16 11 O -0.52 -9.29 15.73 -18.75 -0.29 -9.59 16 12 O -0.35 -6.77 10.22 -39.25 -0.40 -7.18 16 13 C 0.07 1.62 5.40 37.16 0.20 1.82 16 14 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 15 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 19 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 O -0.22 -2.43 10.87 5.38 0.06 -2.37 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.12 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 36 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -33.02 344.16 -5.01 -38.04 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -5.88 Total: -5.40 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.20 Total: -2.93 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 1.53 Total: -32.02 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.64 Total: -19.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.02 -5.01 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177450186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.314 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds