Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46936 * 119.99726 * 9 7 5 12 12 H 1.48497 * 109.47316 * 239.99974 * 9 7 5 13 13 S 1.81003 * 109.47194 * 239.99934 * 2 1 3 14 14 C 1.76192 * 100.00037 * 64.99821 * 13 2 1 15 15 N 1.31542 * 126.45237 * 0.02906 * 14 13 2 16 16 N 1.28423 * 110.50470 * 179.97438 * 15 14 13 17 17 N 1.28906 * 110.33553 * 0.02562 * 16 15 14 18 18 N 1.35401 * 126.45526 * 179.71332 * 14 13 2 19 19 C 1.46505 * 127.38102 * 359.97438 * 18 14 13 20 20 C 1.54266 * 110.03357 * 237.16777 * 19 18 14 21 21 C 1.54889 * 104.19375 * 217.10938 * 20 19 18 22 22 C 1.54887 * 102.74931 * 37.94227 * 21 20 19 23 23 C 1.53878 * 110.02713 * 119.99961 * 19 18 14 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 28 28 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 29 29 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 30 30 H 1.08996 * 110.01502 * 358.61327 * 19 18 14 31 31 H 1.09002 * 110.48333 * 335.78214 * 20 19 18 32 32 H 1.08998 * 110.48711 * 98.42771 * 20 19 18 33 33 H 1.09001 * 110.75490 * 279.62303 * 21 20 19 34 34 H 1.09004 * 110.75226 * 156.25396 * 21 20 19 35 35 H 1.09004 * 110.48293 * 203.38130 * 22 21 20 36 36 H 1.09001 * 110.60104 * 80.79278 * 22 21 20 37 37 H 1.08994 * 110.03207 * 238.56731 * 23 19 18 38 38 H 1.08999 * 110.03352 * 359.95198 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.5838 -0.2921 1.2656 11 1 6.4870 -0.3650 3.6872 12 1 6.6854 -2.4227 2.4196 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2421 -2.7257 15 7 0.8624 1.3508 -2.5341 16 7 0.5898 1.9111 -3.6571 17 7 1.0670 1.2158 -4.6320 18 7 1.7123 0.1044 -4.0621 19 6 2.4145 -0.9730 -4.7638 20 6 3.5409 -0.3870 -5.6399 21 6 3.5320 -1.2713 -6.9115 22 6 2.0216 -1.5279 -7.1389 23 6 1.4485 -1.6985 -5.7169 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6055 -0.2618 2.1370 28 1 1.7516 -1.7716 1.2057 29 1 4.0606 -2.2423 4.0363 30 1 2.8291 -1.6788 -4.0440 31 1 3.3249 0.6505 -5.8953 32 1 4.5006 -0.4632 -5.1288 33 1 4.0606 -2.2079 -6.7343 34 1 3.9645 -0.7363 -7.7570 35 1 1.8726 -2.4369 -7.7218 36 1 1.5586 -0.6761 -7.6372 37 1 1.3951 -2.7564 -5.4602 38 1 0.4571 -1.2494 -5.6567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188278798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = 90.350091 kcal Electronic energy + Delta-G solvation = -19917.432189 eV Core-core repulsion = 16922.895381 eV Total energy + Delta-G solvation = -2994.536808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.59512 -38.55410 -34.76480 -33.81426 -32.36250 -31.66558 -29.12560 -28.49845 -27.56581 -24.03451 -23.41255 -23.03766 -21.06306 -20.92198 -20.23926 -17.85394 -16.62568 -16.47353 -16.24318 -15.89914 -15.10977 -14.76408 -14.57825 -13.72144 -13.43692 -13.14735 -12.77383 -12.61586 -12.29790 -12.24629 -11.92294 -11.65604 -11.52389 -11.44702 -11.31343 -11.12090 -11.03453 -10.95511 -10.84115 -10.66300 -10.58435 -10.46954 -10.11344 -9.71323 -9.60930 -9.26677 -8.49984 -7.48924 -6.14332 -4.17658 1.13988 1.22770 2.26595 2.50654 2.60603 3.24485 3.32955 3.37109 4.02007 4.13802 4.36043 4.48255 4.68955 4.89888 5.02224 5.04247 5.09818 5.23408 5.27954 5.45362 5.51370 5.55951 5.61708 5.66076 5.69302 5.74601 5.80237 5.83653 5.99855 6.04602 6.33258 6.44229 6.51291 6.69122 7.40142 7.42772 7.82225 8.16757 8.69470 8.87463 9.47715 10.96476 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004843 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.798114 B = 5779.599611 C = 6639.770532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 H 0.096 0.904 4 C 0.036 3.964 5 C -0.527 4.527 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 S 0.046 5.954 14 C 0.217 3.783 15 N -0.339 5.339 16 N -0.043 5.043 17 N -0.099 5.099 18 N -0.366 5.366 19 C 0.147 3.853 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.131 4.131 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -1.974 -17.314 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 H 0.114 0.886 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 S 0.272 5.728 14 C -0.166 4.166 15 N -0.196 5.196 16 N -0.039 5.039 17 N -0.086 5.086 18 N -0.166 5.166 19 C 0.045 3.955 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.170 4.170 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.025 -1.908 -17.711 17.928 hybrid contribution 0.860 0.365 0.454 1.039 sum -1.165 -1.543 -17.257 17.365 Atomic orbital electron populations 1.22150 0.93800 1.02094 1.02800 1.23815 0.97830 1.02848 0.94328 0.88582 1.19136 0.96612 0.95691 0.88818 1.21286 0.91391 1.35145 1.08765 0.91780 1.24976 0.98599 0.94954 0.95440 1.69956 1.35694 1.35413 1.11883 0.86532 0.85500 0.77888 0.78170 1.19528 1.20917 1.20901 1.86257 1.66148 1.25924 0.94433 1.28593 0.98310 0.99730 0.89923 1.74945 1.19299 1.06635 1.18752 1.77801 1.13192 1.19557 0.93341 1.82278 1.12845 0.94646 1.18853 1.51730 1.40686 1.20261 1.03893 1.22422 0.92327 0.85419 0.95373 1.22768 0.97437 1.00994 0.95860 1.22473 0.96590 0.99770 0.97008 1.22343 0.95475 1.02238 0.95818 1.22516 0.99036 1.00827 0.94591 0.91783 0.91495 0.92438 0.93774 0.95325 0.92798 0.86365 0.89855 0.90025 0.90707 0.90688 0.90956 0.90993 0.89802 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.01 37.16 0.33 -2.24 16 2 C -0.06 -1.16 2.29 -26.73 -0.06 -1.22 16 3 H 0.10 1.98 8.14 -51.92 -0.42 1.55 16 4 C 0.04 0.86 4.44 -27.88 -0.12 0.73 16 5 C -0.53 -13.72 8.53 -34.44 -0.29 -14.01 16 6 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 S 0.05 0.81 20.22 -107.50 -2.17 -1.37 16 14 C 0.22 3.78 7.84 -89.17 -0.70 3.08 16 15 N -0.34 -6.43 9.71 30.50 0.30 -6.14 16 16 N -0.04 -0.81 13.38 60.35 0.81 0.00 16 17 N -0.10 -1.66 13.55 60.35 0.82 -0.84 16 18 N -0.37 -5.57 3.24 -53.71 -0.17 -5.74 16 19 C 0.15 1.68 3.80 -66.81 -0.25 1.42 16 20 C -0.13 -1.30 6.52 -25.07 -0.16 -1.46 16 21 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 22 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 23 C -0.13 -1.24 6.58 -25.61 -0.17 -1.40 16 24 H 0.06 1.11 5.91 -51.93 -0.31 0.80 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.12 1.28 7.36 -51.93 -0.38 0.90 16 31 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -29.10 326.85 -7.34 -36.44 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.69 Total: -2.80 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.87 Total: -15.67 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 2.48 Total: -37.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.17 Total: -1.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.10 -7.34 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188278798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.788 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds