Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46936 * 119.99726 * 9 7 5 12 12 H 1.48497 * 109.47316 * 239.99974 * 9 7 5 13 13 S 1.81003 * 109.47194 * 239.99934 * 2 1 3 14 14 C 1.76192 * 100.00037 * 64.99821 * 13 2 1 15 15 N 1.31542 * 126.45237 * 0.02906 * 14 13 2 16 16 N 1.28423 * 110.50470 * 179.97438 * 15 14 13 17 17 N 1.28906 * 110.33553 * 0.02562 * 16 15 14 18 18 N 1.35401 * 126.45526 * 179.71332 * 14 13 2 19 19 C 1.46505 * 127.38102 * 359.97438 * 18 14 13 20 20 C 1.54266 * 110.03357 * 237.16777 * 19 18 14 21 21 C 1.54889 * 104.19375 * 217.10938 * 20 19 18 22 22 C 1.54887 * 102.74931 * 37.94227 * 21 20 19 23 23 C 1.53878 * 110.02713 * 119.99961 * 19 18 14 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 28 28 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 29 29 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 30 30 H 1.08996 * 110.01502 * 358.61327 * 19 18 14 31 31 H 1.09002 * 110.48333 * 335.78214 * 20 19 18 32 32 H 1.08998 * 110.48711 * 98.42771 * 20 19 18 33 33 H 1.09001 * 110.75490 * 279.62303 * 21 20 19 34 34 H 1.09004 * 110.75226 * 156.25396 * 21 20 19 35 35 H 1.09004 * 110.48293 * 203.38130 * 22 21 20 36 36 H 1.09001 * 110.60104 * 80.79278 * 22 21 20 37 37 H 1.08994 * 110.03207 * 238.56731 * 23 19 18 38 38 H 1.08999 * 110.03352 * 359.95198 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.5838 -0.2921 1.2656 11 1 6.4870 -0.3650 3.6872 12 1 6.6854 -2.4227 2.4196 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2421 -2.7257 15 7 0.8624 1.3508 -2.5341 16 7 0.5898 1.9111 -3.6571 17 7 1.0670 1.2158 -4.6320 18 7 1.7123 0.1044 -4.0621 19 6 2.4145 -0.9730 -4.7638 20 6 3.5409 -0.3870 -5.6399 21 6 3.5320 -1.2713 -6.9115 22 6 2.0216 -1.5279 -7.1389 23 6 1.4485 -1.6985 -5.7169 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6055 -0.2618 2.1370 28 1 1.7516 -1.7716 1.2057 29 1 4.0606 -2.2423 4.0363 30 1 2.8291 -1.6788 -4.0440 31 1 3.3249 0.6505 -5.8953 32 1 4.5006 -0.4632 -5.1288 33 1 4.0606 -2.2079 -6.7343 34 1 3.9645 -0.7363 -7.7570 35 1 1.8726 -2.4369 -7.7218 36 1 1.5586 -0.6761 -7.6372 37 1 1.3951 -2.7564 -5.4602 38 1 0.4571 -1.2494 -5.6567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188278798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = 75.203754 kcal Electronic energy + Delta-G solvation = -19918.088984 eV Core-core repulsion = 16922.895381 eV Total energy + Delta-G solvation = -2995.193603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.95255 -39.38510 -36.52542 -34.96868 -34.18468 -33.15749 -29.84476 -29.50847 -29.30466 -25.31006 -25.23932 -24.38824 -22.46107 -21.69871 -21.38119 -19.07012 -18.50473 -17.87814 -17.53451 -16.75530 -16.62066 -16.50898 -15.55326 -14.89187 -14.66662 -14.43809 -14.34470 -13.77251 -13.68236 -13.56011 -13.30082 -13.19748 -12.92822 -12.67947 -12.58129 -12.36233 -12.19994 -12.09224 -12.03997 -11.93967 -11.92028 -11.61025 -11.47609 -11.30416 -11.22938 -11.15463 -10.54833 -8.92042 -8.19391 -6.28649 -0.20406 -0.17264 1.02294 1.08648 1.12902 1.42047 1.44857 1.55990 2.42833 3.07224 3.16631 3.37437 3.57199 3.67958 3.95966 4.04798 4.11598 4.16505 4.23663 4.33433 4.35950 4.51290 4.55134 4.65322 4.75034 4.86558 4.90480 4.94639 4.99042 5.13431 5.16524 5.23524 5.30465 5.39646 5.41279 5.49372 5.78128 6.16137 6.83884 7.30826 7.40445 8.92083 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004843 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.798114 B = 5779.599611 C = 6639.770532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 H 0.084 0.916 4 C 0.044 3.956 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.277 1.277 13 S 0.067 5.933 14 C 0.209 3.791 15 N -0.357 5.357 16 N -0.064 5.064 17 N -0.093 5.093 18 N -0.350 5.350 19 C 0.130 3.870 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.128 4.128 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 -2.823 -19.155 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.189 4.189 3 H 0.103 0.897 4 C 0.006 3.994 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.187 4.187 8 N -0.567 5.567 9 Si 0.779 3.221 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.203 1.203 13 S 0.293 5.707 14 C -0.175 4.175 15 N -0.215 5.215 16 N -0.059 5.059 17 N -0.080 5.080 18 N -0.150 5.150 19 C 0.029 3.971 20 C -0.171 4.171 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.167 4.167 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.954 -2.758 -19.576 19.793 hybrid contribution 0.519 0.617 0.933 1.233 sum -0.436 -2.142 -18.643 18.771 Atomic orbital electron populations 1.22066 0.91968 1.02766 1.03126 1.23555 0.99368 1.01794 0.94135 0.89734 1.18910 0.95581 0.94899 0.90052 1.21607 0.92670 1.34543 1.08620 0.91682 1.25766 1.02969 0.94755 0.95207 1.70063 1.37424 1.36572 1.12611 0.85565 0.80310 0.78052 0.78217 1.18720 1.20844 1.20290 1.86022 1.66362 1.25086 0.93231 1.28405 0.98847 0.99586 0.90679 1.74869 1.19886 1.07334 1.19368 1.77794 1.14332 1.20344 0.93477 1.82205 1.12354 0.94828 1.18653 1.52032 1.39515 1.20174 1.03263 1.22994 0.93244 0.84775 0.96043 1.22802 0.96870 1.00457 0.96932 1.22484 0.96553 1.00048 0.95852 1.22349 0.95446 1.02988 0.94698 1.22556 0.97459 1.01415 0.95257 0.91649 0.90938 0.91566 0.95904 0.96873 0.92697 0.85614 0.91624 0.89488 0.88980 0.89562 0.88775 0.91856 0.87820 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.01 71.98 0.65 -4.16 16 2 C -0.06 -2.33 2.29 30.60 0.07 -2.26 16 3 H 0.08 3.51 8.14 -2.40 -0.02 3.49 16 4 C 0.04 2.13 4.44 29.85 0.13 2.26 16 5 C -0.54 -27.94 8.53 25.60 0.22 -27.73 16 6 H 0.07 3.32 7.60 -2.91 -0.02 3.29 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -52.84 13.29 21.45 0.28 -52.55 16 9 Si 0.95 42.04 29.54 68.60 2.03 44.06 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 S 0.07 2.31 20.22 -56.49 -1.14 1.17 16 14 C 0.21 7.09 7.84 179.84 1.41 8.50 16 15 N -0.36 -13.45 9.71 -57.41 -0.56 -14.01 16 16 N -0.06 -2.37 13.38 37.02 0.50 -1.88 16 17 N -0.09 -3.06 13.55 37.02 0.50 -2.56 16 18 N -0.35 -10.30 3.24 -323.85 -1.05 -11.34 16 19 C 0.13 2.73 3.80 45.72 0.17 2.91 16 20 C -0.13 -2.34 6.52 31.67 0.21 -2.13 16 21 C -0.11 -1.29 6.91 31.88 0.22 -1.07 16 22 C -0.12 -1.46 6.83 31.67 0.22 -1.25 16 23 C -0.13 -2.13 6.58 31.32 0.21 -1.93 16 24 H 0.06 2.24 5.91 -2.39 -0.01 2.22 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.13 2.46 7.36 -2.39 -0.02 2.44 16 31 H 0.07 1.41 7.76 -2.39 -0.02 1.39 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.22 7.90 -2.39 -0.02 1.20 16 Total: -1.00 -61.97 326.85 5.57 -56.40 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.05 Total: 6.45 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.96 Total: -25.74 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -0.32 Total: -82.34 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.14 Total: 1.17 kcal Total: -61.97 5.57 -56.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188278798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.606 kcal (2) G-P(sol) polarization free energy of solvation -61.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds