Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34512 * 125.79226 * 2 1 4 4 C 1.41379 * 106.84086 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79090 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47393 * 340.02245 * 6 5 4 8 8 O 1.42900 * 109.47234 * 220.02126 * 6 5 4 9 9 C 1.53004 * 109.47466 * 100.02284 * 6 5 4 10 10 N 1.46497 * 109.47164 * 185.00303 * 9 6 5 11 11 C 1.34773 * 120.00097 * 180.02562 * 10 9 6 12 12 O 1.21592 * 119.99778 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00233 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00150 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47271 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47249 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99531 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00007 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99755 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47537 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47127 * 120.00438 * 20 18 16 23 23 H 1.48505 * 109.47328 * 239.99888 * 20 18 16 24 24 O 1.34301 * 108.41872 * 359.97438 * 5 4 3 25 25 H 1.09004 * 109.47797 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47078 * 299.99936 * 1 2 3 27 27 H 1.09005 * 109.47246 * 59.99506 * 1 2 3 28 28 H 1.07997 * 126.57601 * 0.02562 * 3 2 1 29 29 H 1.08007 * 126.57604 * 180.02562 * 4 3 2 30 30 H 0.96694 * 114.00041 * 300.00344 * 8 6 5 31 31 H 1.09000 * 109.46531 * 304.99901 * 9 6 5 32 32 H 1.08999 * 109.46986 * 64.99937 * 9 6 5 33 33 H 0.96998 * 120.00085 * 359.97438 * 10 9 6 34 34 H 0.97002 * 120.00065 * 0.02562 * 13 11 10 35 35 H 1.08996 * 109.46945 * 300.00418 * 14 13 11 36 36 H 1.09005 * 109.46540 * 59.99943 * 14 13 11 37 37 H 1.08996 * 109.47423 * 300.00059 * 15 14 13 38 38 H 1.09005 * 109.46916 * 60.00410 * 15 14 13 39 39 H 0.96999 * 119.99335 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0004 6 6 4.7705 -1.6380 0.0014 7 1 5.6508 -1.0990 -0.3488 8 8 4.5134 -2.7446 -0.8654 9 6 5.0174 -2.1496 1.4220 10 7 6.2421 -2.9531 1.4457 11 6 6.6601 -3.5108 2.5993 12 8 6.0208 -3.3466 3.6205 13 7 7.7865 -4.2504 2.6210 14 6 8.2411 -4.8561 3.8751 15 6 9.5334 -5.6362 3.6257 16 6 10.0007 -6.2598 4.9156 17 1 9.4324 -6.1146 5.8225 18 6 11.1535 -7.0156 4.9380 19 7 11.8457 -7.1920 3.8337 20 14 11.7323 -7.7892 6.5367 21 1 10.7846 -7.4422 7.6261 22 1 11.7889 -9.2649 6.3806 23 1 13.0839 -7.2750 6.8747 24 8 2.2924 -1.0894 0.0002 25 1 -0.3635 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.9665 2.1203 0.0004 29 1 4.5212 1.2433 0.0012 30 1 3.7421 -3.2706 -0.6136 31 1 5.1254 -1.3026 2.0995 32 1 4.1741 -2.7632 1.7389 33 1 6.7519 -3.0843 0.6310 34 1 8.2967 -4.3810 1.8064 35 1 8.4258 -4.0733 4.6106 36 1 7.4739 -5.5335 4.2503 37 1 9.3491 -6.4190 2.8900 38 1 10.3003 -4.9583 3.2507 39 1 12.6570 -7.7234 3.8496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273032246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -79.606633 kcal Electronic energy + Delta-G solvation = -21008.911911 eV Core-core repulsion = 17531.959605 eV Total energy + Delta-G solvation = -3476.952307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.98101 -39.66572 -37.83622 -34.96112 -34.15869 -33.53327 -32.83272 -32.52614 -30.13959 -29.01889 -26.31513 -24.55248 -22.96299 -22.20595 -21.07273 -20.71429 -20.40193 -18.18726 -18.09998 -16.61147 -16.36521 -16.16324 -15.92815 -15.39920 -14.94904 -14.77842 -14.44800 -13.92228 -13.69119 -13.60468 -13.43631 -13.35542 -13.22204 -13.16038 -12.43143 -12.27111 -12.25137 -11.92090 -11.16316 -11.03588 -10.77892 -10.60198 -10.31083 -10.21627 -9.96030 -9.55258 -9.23341 -9.07460 -8.66624 -8.47663 -8.24100 -6.07810 -4.10243 1.28778 2.22119 2.40499 3.05109 3.29673 3.37288 3.42855 3.57980 3.95172 4.13482 4.37650 4.41526 4.52789 4.66408 4.74392 4.76568 4.98403 5.02722 5.26277 5.29377 5.41381 5.46191 5.56191 5.67532 5.74825 6.16388 6.30597 6.41478 6.51463 6.76082 6.79317 7.01065 7.12910 7.23137 7.58752 7.65289 7.91674 8.27360 8.43743 8.94222 8.99885 9.54443 11.03906 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.050148 B = 0.002304 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.212104 B =12148.765915 C =12352.531228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.008 4.008 3 C -0.214 4.214 4 C -0.189 4.189 5 C -0.048 4.048 6 C 0.186 3.814 7 H 0.134 0.866 8 O -0.547 6.547 9 C 0.113 3.887 10 N -0.749 5.749 11 C 0.699 3.301 12 O -0.599 6.599 13 N -0.737 5.737 14 C 0.140 3.860 15 C 0.012 3.988 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.284 1.284 24 O -0.170 6.170 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.385 0.615 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.394 0.606 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 15.553 -12.392 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.233 4.233 4 C -0.208 4.208 5 C -0.099 4.099 6 C 0.126 3.874 7 H 0.151 0.849 8 O -0.353 6.353 9 C -0.013 4.013 10 N -0.407 5.407 11 C 0.399 3.601 12 O -0.478 6.478 13 N -0.390 5.390 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 O -0.067 6.067 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.227 0.773 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.592 15.522 -11.768 27.628 hybrid contribution 0.493 -0.441 0.350 0.749 sum -19.099 15.081 -11.418 26.881 Atomic orbital electron populations 1.20336 0.84945 1.04210 1.03666 1.22520 0.94080 0.84072 1.05153 1.21571 0.92573 0.99573 1.09581 1.21617 0.98565 0.93595 1.07056 1.22970 0.83502 0.95232 1.08189 1.20687 0.91469 0.84960 0.90234 0.84893 1.86591 1.52920 1.42008 1.53793 1.21774 0.87892 0.96022 0.95605 1.44924 1.28181 1.56789 1.10787 1.16029 0.81729 0.79048 0.83313 1.90896 1.58056 1.66301 1.32529 1.45524 1.25375 1.54084 1.14063 1.21601 0.97918 0.95938 0.82827 1.19335 0.90213 0.94909 0.98079 1.21094 1.08613 1.31320 0.94799 0.92162 1.25005 0.96519 0.96313 0.96565 1.69970 1.16569 1.40015 1.26774 0.86451 0.78608 0.78933 0.83532 1.19577 1.20957 1.20969 1.83918 1.15993 1.35252 1.71508 0.90451 0.89498 0.89603 0.83291 0.83096 0.76623 0.90365 0.91042 0.76695 0.77282 0.92772 0.92773 0.95926 0.95931 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.42 36.00 0.38 0.00 16 2 C -0.01 -0.07 7.32 -35.63 -0.26 -0.33 16 3 C -0.21 -1.83 10.81 -39.70 -0.43 -2.26 16 4 C -0.19 -1.71 10.80 -39.70 -0.43 -2.14 16 5 C -0.05 -0.47 6.18 -35.63 -0.22 -0.69 16 6 C 0.19 1.63 3.47 -27.88 -0.10 1.53 16 7 H 0.13 0.96 8.13 -51.93 -0.42 0.54 16 8 O -0.55 -5.05 13.27 -37.33 -0.50 -5.54 16 9 C 0.11 1.25 5.29 -4.04 -0.02 1.23 16 10 N -0.75 -9.52 5.51 -65.23 -0.36 -9.88 16 11 C 0.70 12.42 8.57 -86.92 -0.74 11.67 16 12 O -0.60 -13.11 16.34 5.28 0.09 -13.03 16 13 N -0.74 -13.23 5.56 -65.22 -0.36 -13.59 16 14 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 17 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 O -0.17 -1.74 10.58 3.62 0.04 -1.70 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.39 2.76 8.97 45.56 0.41 3.17 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 4.10 8.49 -40.82 -0.35 3.75 16 34 H 0.39 6.07 8.49 -40.82 -0.35 5.73 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -34.74 343.06 -7.51 -42.25 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.90 Total: 6.46 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.40 Total: -1.11 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.01 Total: -49.00 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.37 Total: -20.27 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.74 -7.51 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.361 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds