Wall clock time and date at job start Tue Mar 31 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47141 * 303.56993 * 3 2 1 5 5 N 1.46502 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99765 * 90.00080 * 5 4 3 7 7 C 1.50700 * 109.46957 * 270.00035 * 6 5 4 8 8 H 1.08002 * 119.99770 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00083 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 300.00001 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00094 * 11 9 7 15 15 C 1.34776 * 120.00331 * 270.00161 * 5 4 3 16 16 O 1.21508 * 120.00302 * 179.97438 * 15 5 4 17 17 O 1.34640 * 119.99817 * 359.97438 * 15 5 4 18 18 C 1.45201 * 116.99722 * 180.02562 * 17 15 5 19 19 C 1.53003 * 109.46556 * 180.02562 * 18 17 15 20 20 H 1.08998 * 110.33306 * 307.24577 * 19 18 17 21 21 C 1.54478 * 110.36849 * 184.99929 * 19 18 17 22 22 C 1.54508 * 104.06391 * 217.18574 * 21 19 18 23 23 C 1.54480 * 104.06037 * 0.02562 * 22 21 19 24 24 O 1.44419 * 110.37650 * 69.61713 * 19 18 17 25 25 H 1.08997 * 109.47084 * 183.56767 * 3 2 1 26 26 H 1.09002 * 109.46616 * 63.56982 * 3 2 1 27 27 H 1.09007 * 109.47399 * 59.99819 * 4 3 2 28 28 H 1.09001 * 109.47640 * 300.00002 * 4 3 2 29 29 H 1.08994 * 109.47197 * 150.00423 * 6 5 4 30 30 H 1.08998 * 109.47414 * 30.00104 * 6 5 4 31 31 H 0.97005 * 119.99661 * 359.97438 * 10 9 7 32 32 H 1.09000 * 109.46815 * 299.99820 * 18 17 15 33 33 H 1.08994 * 109.47054 * 60.00205 * 18 17 15 34 34 H 1.09000 * 110.51316 * 335.83399 * 21 19 18 35 35 H 1.09001 * 110.51504 * 98.54338 * 21 19 18 36 36 H 1.09012 * 110.51022 * 118.64305 * 22 21 19 37 37 H 1.09001 * 110.51467 * 241.21898 * 22 21 19 38 38 H 1.09008 * 110.37140 * 142.80564 * 23 22 21 39 39 H 1.09000 * 110.37365 * 265.14136 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7967 1.2018 5 7 4.5834 -0.7966 1.2015 6 6 5.3159 0.2608 1.9028 7 6 5.5667 1.4088 0.9593 8 1 5.2152 1.3562 -0.0606 9 6 6.2449 2.5261 1.3980 10 7 6.6734 2.5900 2.6397 11 14 6.5552 3.9495 0.2287 12 1 7.2978 5.0212 0.9394 13 1 7.3567 3.4744 -0.9277 14 1 5.2572 4.4846 -0.2551 15 6 5.2573 -1.7691 0.5561 16 8 6.4724 -1.7687 0.5554 17 8 4.5840 -2.7410 -0.0880 18 6 5.3749 -3.7560 -0.7609 19 6 4.4428 -4.7671 -1.4316 20 1 3.7214 -5.1529 -0.7113 21 6 5.2592 -5.9247 -2.0477 22 6 4.5102 -6.2569 -3.3576 23 6 3.3301 -5.2602 -3.3782 24 8 3.7627 -4.1585 -2.5509 25 1 2.9709 1.0265 0.0639 26 1 2.9715 -0.4566 -0.9203 27 1 2.7555 -1.8226 1.1379 28 1 2.7549 -0.3395 2.1221 29 1 6.2684 -0.1317 2.2586 30 1 4.7270 0.6097 2.7510 31 1 6.5119 1.8510 3.2470 32 1 6.0035 -3.2848 -1.5166 33 1 6.0039 -4.2683 -0.0330 34 1 6.2781 -5.6019 -2.2617 35 1 5.2629 -6.7868 -1.3808 36 1 5.1588 -6.0982 -4.2193 37 1 4.1456 -7.2839 -3.3392 38 1 3.1393 -4.9190 -4.3958 39 1 2.4364 -5.7214 -2.9579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283655666.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:41 Heat of formation + Delta-G solvation = -105.760676 kcal Electronic energy + Delta-G solvation = -22319.476823 eV Core-core repulsion = 18841.390391 eV Total energy + Delta-G solvation = -3478.086431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13561 -39.39483 -37.03902 -36.19473 -35.13494 -33.05984 -32.41466 -31.05200 -30.66954 -27.17463 -25.70481 -23.89268 -23.13359 -22.15313 -21.24398 -19.97927 -17.76380 -17.40091 -17.01474 -16.65738 -16.44760 -16.03225 -15.63790 -15.24986 -14.73870 -14.16536 -13.98534 -13.77339 -13.54929 -13.23968 -13.04428 -12.51175 -12.36552 -12.19004 -12.07233 -12.01325 -11.69896 -11.59938 -11.50305 -11.33597 -11.01686 -10.91744 -10.71393 -10.57772 -10.30251 -10.12694 -9.96313 -9.77810 -9.25591 -8.43947 -7.89896 -6.43999 -4.17736 2.61112 2.95804 3.02991 3.41738 3.45319 3.49125 3.62711 3.64100 4.04547 4.28925 4.42726 4.49965 4.60724 4.69512 4.91190 4.99020 5.10467 5.23104 5.25881 5.30835 5.37169 5.38383 5.46381 5.50828 5.61026 5.69586 5.70100 5.76631 6.01260 6.27689 6.44609 6.62835 6.78010 7.06752 7.19043 7.77638 7.92051 8.07215 8.34696 8.71353 8.97133 9.51760 10.93324 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.004650 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.396508 B = 6019.586602 C = 6886.168169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.224 3.776 3 C -0.051 4.051 4 C 0.131 3.869 5 N -0.573 5.573 6 C 0.248 3.752 7 C -0.612 4.612 8 H 0.057 0.943 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 1.068 2.932 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.644 3.356 16 O -0.565 6.565 17 O -0.372 6.372 18 C 0.094 3.906 19 C 0.076 3.924 20 H 0.080 0.920 21 C -0.148 4.148 22 C -0.154 4.154 23 C 0.042 3.958 24 O -0.361 6.361 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 -16.547 -8.449 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.094 4.094 3 C -0.092 4.092 4 C 0.005 3.995 5 N -0.311 5.311 6 C 0.130 3.870 7 C -0.650 4.650 8 H 0.075 0.925 9 C -0.181 4.181 10 N -0.542 5.542 11 Si 0.896 3.104 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.213 1.213 15 C 0.397 3.603 16 O -0.454 6.454 17 O -0.287 6.287 18 C 0.018 3.982 19 C 0.018 3.982 20 H 0.098 0.902 21 C -0.186 4.186 22 C -0.192 4.192 23 C -0.035 4.035 24 O -0.280 6.280 25 H 0.146 0.854 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.623 -14.854 -8.602 18.062 hybrid contribution -0.124 -1.758 -0.024 1.762 sum -5.748 -16.611 -8.626 19.580 Atomic orbital electron populations 1.81156 1.13097 1.09875 1.09264 1.29236 0.95185 0.92328 0.92641 1.19935 0.80845 1.06221 1.02241 1.21217 0.80787 1.00187 0.97288 1.47014 1.05396 1.25526 1.53184 1.19504 0.91955 0.83723 0.91846 1.22263 1.41232 1.02616 0.98922 0.92487 1.25765 0.93145 1.00491 0.98715 1.70816 1.43681 1.34718 1.05011 0.83541 0.76591 0.75487 0.74754 1.20712 1.21344 1.21301 1.18078 0.84210 0.79726 0.78277 1.90973 1.12236 1.77362 1.64782 1.86226 1.40716 1.36675 1.65048 1.22868 0.92306 0.87245 0.95733 1.23058 0.93899 0.91731 0.89472 0.90244 1.22906 1.00571 0.98081 0.97032 1.22938 0.97894 1.00160 0.98213 1.23412 0.96267 0.87626 0.96219 1.89262 1.74988 1.28673 1.35033 0.85426 0.87325 0.90183 0.89687 0.94372 0.95037 0.92149 0.90409 0.90029 0.89980 0.89910 0.90455 0.90422 0.88992 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.79 18.54 42.15 0.78 -7.01 16 2 C 0.22 3.39 15.43 -20.76 -0.32 3.07 16 3 C -0.05 -0.75 6.03 -29.52 -0.18 -0.93 16 4 C 0.13 2.02 5.41 -4.05 -0.02 2.00 16 5 N -0.57 -11.39 2.46 -180.86 -0.44 -11.83 16 6 C 0.25 5.89 4.52 -5.19 -0.02 5.87 16 7 C -0.61 -16.03 8.92 -34.44 -0.31 -16.33 16 8 H 0.06 1.48 7.42 -52.49 -0.39 1.09 16 9 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 10 N -0.91 -26.26 13.65 55.43 0.76 -25.51 16 11 Si 1.07 24.37 29.90 -169.99 -5.08 19.29 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 15 C 0.64 13.21 8.39 54.05 0.45 13.66 16 16 O -0.57 -13.65 15.71 -19.28 -0.30 -13.95 16 17 O -0.37 -6.29 9.04 -41.07 -0.37 -6.66 16 18 C 0.09 1.30 5.08 37.16 0.19 1.49 16 19 C 0.08 0.84 3.58 -25.95 -0.09 0.75 16 20 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.15 -1.18 6.63 -25.16 -0.17 -1.34 16 22 C -0.15 -1.08 7.09 -25.16 -0.18 -1.26 16 23 C 0.04 0.37 7.63 37.93 0.29 0.66 16 24 O -0.36 -4.64 11.34 -35.23 -0.40 -5.04 16 25 H 0.13 2.04 7.26 -51.93 -0.38 1.66 16 26 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 27 H 0.08 1.11 7.37 -51.92 -0.38 0.72 16 28 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 29 H 0.04 1.02 7.29 -51.93 -0.38 0.64 16 30 H 0.03 0.74 7.76 -51.93 -0.40 0.33 16 31 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -32.98 339.50 -6.05 -39.03 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.64 Total: -1.62 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.45 Total: 8.18 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 1.09 Total: -44.34 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.07 Total: -25.65 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.98 -6.05 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283655666.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.732 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds