Wall clock time and date at job start Tue Mar 31 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.79115 * 2 1 4 4 C 1.50935 * 109.75449 * 239.27284 * 2 1 3 5 5 C 1.34089 * 128.20459 * 44.64512 * 4 2 1 6 6 C 1.41137 * 107.34009 * 180.24630 * 5 4 2 7 7 C 1.35184 * 107.48874 * 359.96353 * 6 5 4 8 8 Cl 1.73603 * 125.92323 * 179.97438 * 7 6 5 9 9 N 1.35723 * 108.15030 * 359.94707 * 7 6 5 10 10 C 1.46801 * 128.05145 * 180.19870 * 9 7 6 11 11 C 1.53362 * 108.20321 * 163.37871 * 10 9 7 12 12 N 1.46944 * 109.79528 * 50.20832 * 11 10 9 13 13 C 1.46908 * 110.99874 * 52.73408 * 12 11 10 14 14 C 1.53001 * 109.46930 * 64.74136 * 13 12 11 15 15 C 1.52994 * 109.46948 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46937 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00100 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00132 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99724 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46838 * 90.00512 * 20 18 16 22 22 H 1.48500 * 109.46645 * 210.00426 * 20 18 16 23 23 H 1.48493 * 109.47265 * 330.00238 * 20 18 16 24 24 H 1.09007 * 109.47131 * 292.07577 * 1 2 3 25 25 H 1.09001 * 109.46979 * 52.07128 * 1 2 3 26 26 H 1.09001 * 109.47028 * 172.07172 * 1 2 3 27 27 H 1.07998 * 126.32787 * 0.25084 * 5 4 2 28 28 H 1.08007 * 126.25079 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.71825 * 43.70347 * 10 9 7 30 30 H 1.09000 * 109.71569 * 283.05672 * 10 9 7 31 31 H 1.08997 * 109.41764 * 290.10360 * 11 10 9 32 32 H 1.09000 * 109.41588 * 170.30920 * 11 10 9 33 33 H 1.08994 * 109.47090 * 304.73615 * 13 12 11 34 34 H 1.09002 * 109.46988 * 184.73499 * 13 12 11 35 35 H 1.08997 * 109.47229 * 59.99535 * 14 13 12 36 36 H 1.09002 * 109.46765 * 299.99500 * 14 13 12 37 37 H 1.09007 * 109.46957 * 60.00259 * 15 14 13 38 38 H 1.09000 * 109.47352 * 300.00031 * 15 14 13 39 39 H 0.96998 * 120.00504 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0402 -0.7258 -1.2211 5 6 1.6149 -0.6176 -2.4882 6 6 2.3934 -1.4979 -3.2698 7 6 3.2685 -2.1108 -2.4415 8 17 4.4537 -3.2916 -2.9050 9 7 3.0601 -1.6425 -1.1848 10 6 3.7695 -2.0096 0.0469 11 6 3.4767 -0.9395 1.1056 12 7 2.0281 -0.7085 1.1922 13 6 1.3048 -1.9710 1.3947 14 6 1.6885 -2.5667 2.7508 15 6 0.9348 -3.8812 2.9620 16 6 1.3131 -4.4683 4.2974 17 1 2.0201 -3.9548 4.9322 18 6 0.7559 -5.6604 4.7092 19 7 -0.1054 -6.2853 3.9365 20 14 1.2244 -6.3876 6.3649 21 1 0.2976 -5.8802 7.4084 22 1 1.1326 -7.8683 6.2988 23 1 2.6151 -5.9925 6.7034 24 1 -0.3634 0.3863 0.9524 25 1 -0.3633 0.6317 -0.8106 26 1 -0.3633 -1.0179 -0.1418 27 1 0.8231 0.0246 -2.8446 28 1 2.3061 -1.6533 -4.3350 29 1 4.8416 -2.0531 -0.1452 30 1 3.4186 -2.9801 0.3980 31 1 3.9759 -0.0107 0.8298 32 1 3.8485 -1.2759 2.0734 33 1 1.5682 -2.6717 0.6024 34 1 0.2315 -1.7827 1.3712 35 1 1.4251 -1.8659 3.5430 36 1 2.7618 -2.7551 2.7743 37 1 1.1978 -4.5822 2.1697 38 1 -0.1385 -3.6926 2.9386 39 1 -0.4971 -7.1241 4.2260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283882465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:28 Heat of formation + Delta-G solvation = 43.345427 kcal Electronic energy + Delta-G solvation = -20392.836166 eV Core-core repulsion = 17361.924625 eV Total energy + Delta-G solvation = -3030.911541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.87528 -38.14182 -36.62716 -34.00184 -33.87708 -31.85596 -30.16028 -28.45323 -27.48995 -26.54371 -23.76254 -22.91448 -21.37842 -20.72098 -20.05052 -18.23143 -17.47002 -16.29851 -16.23207 -15.40481 -14.95748 -14.53155 -14.30562 -14.26343 -13.73839 -13.35075 -12.99061 -12.89677 -12.44102 -12.40357 -12.13257 -11.79413 -11.74803 -11.63428 -11.36132 -11.21609 -11.15499 -11.04069 -10.81638 -10.53588 -10.47706 -9.67696 -9.38487 -9.09650 -8.74573 -8.36947 -8.32079 -7.99853 -6.01392 -4.03989 1.72709 2.01178 2.83980 2.89037 3.30741 3.37066 3.39969 3.91287 4.44802 4.47520 4.70279 4.81288 4.92697 5.14579 5.25633 5.34479 5.38673 5.41818 5.53225 5.62551 5.69873 5.79145 5.87212 5.91160 6.09211 6.11347 6.16081 6.28087 6.58605 6.63363 6.76343 6.95414 6.99942 7.08869 7.18484 7.22525 7.65178 7.78806 7.98149 8.40766 9.03119 9.60293 11.09969 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.004364 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.329944 B = 6414.558719 C = 7139.577562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.149 3.851 3 H 0.098 0.902 4 C 0.007 3.993 5 C -0.181 4.181 6 C -0.177 4.177 7 C 0.063 3.937 8 Cl -0.030 7.030 9 N -0.434 5.434 10 C 0.060 3.940 11 C 0.046 3.954 12 N -0.527 5.527 13 C 0.043 3.957 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.012 0.988 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 12.791 -12.801 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.040 3.960 3 H 0.115 0.885 4 C -0.106 4.106 5 C -0.205 4.205 6 C -0.204 4.204 7 C -0.074 4.074 8 Cl -0.002 7.002 9 N -0.113 5.113 10 C -0.062 4.062 11 C -0.083 4.083 12 N -0.249 5.249 13 C -0.083 4.083 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.282 12.701 -12.112 18.641 hybrid contribution 0.640 -1.392 0.022 1.532 sum 6.922 11.310 -12.090 17.944 Atomic orbital electron populations 1.21913 0.92490 1.02963 1.02704 1.20627 0.96052 0.96682 0.82679 0.88457 1.21333 0.93695 0.97483 0.98096 1.20364 1.03949 1.04614 0.91607 1.20702 0.98813 1.01734 0.99130 1.20691 1.00169 1.00794 0.85783 1.98364 1.55898 1.55512 1.90444 1.44149 1.28414 1.32764 1.05975 1.22792 0.97696 1.02196 0.83560 1.22520 0.90099 0.97267 0.98434 1.62577 1.02759 1.23846 1.35717 1.22540 0.99000 0.87874 0.98920 1.21665 0.99848 0.99046 0.93691 1.19053 0.95402 0.90339 0.96659 1.21223 1.25419 1.06095 1.03032 0.92694 1.25025 0.95122 0.97073 0.97209 1.69961 1.29601 1.16972 1.36931 0.86608 0.78895 0.78245 0.84345 1.20615 1.21255 1.19900 0.90778 0.91735 0.91665 0.83953 0.83920 0.89140 0.88610 0.90209 0.87594 0.94924 0.90036 0.92376 0.93706 0.97012 0.96578 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.86 37.16 0.29 -1.30 16 2 C 0.15 1.80 3.22 -68.50 -0.22 1.58 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.01 0.09 5.58 -81.54 -0.46 -0.36 16 5 C -0.18 -2.26 10.39 -39.94 -0.41 -2.67 16 6 C -0.18 -2.29 10.85 -39.57 -0.43 -2.72 16 7 C 0.06 0.87 7.47 -16.92 -0.13 0.75 16 8 Cl -0.03 -0.38 29.13 -51.86 -1.51 -1.89 16 9 N -0.43 -6.04 2.91 -108.65 -0.32 -6.36 16 10 C 0.06 0.78 6.09 -3.69 -0.02 0.76 16 11 C 0.05 0.56 5.49 -3.61 -0.02 0.54 16 12 N -0.53 -7.31 4.88 -227.25 -1.11 -8.42 16 13 C 0.04 0.73 3.83 -3.82 -0.01 0.71 16 14 C -0.10 -2.08 5.04 -26.73 -0.13 -2.21 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.84 6.65 -51.93 -0.35 0.49 16 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.43 6.86 -51.93 -0.36 1.08 16 31 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.11 1.30 6.80 -51.93 -0.35 0.95 16 33 H 0.03 0.59 5.71 -51.93 -0.30 0.30 16 34 H 0.08 1.39 5.82 -51.93 -0.30 1.09 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.04 0.86 6.68 -51.93 -0.35 0.51 16 37 H 0.01 0.32 8.14 -51.92 -0.42 -0.11 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -30.34 322.15 -10.23 -40.57 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.77 Total: -1.26 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.10 Total: -17.85 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.69 Total: -41.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.34 -10.23 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283882465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.914 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds