Wall clock time and date at job start Tue Mar 31 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.75087 * 2 1 4 4 C 1.50935 * 109.75370 * 120.69311 * 2 1 3 5 5 C 1.34086 * 128.20415 * 315.35209 * 4 2 1 6 6 C 1.41147 * 107.33986 * 179.53566 * 5 4 2 7 7 C 1.35183 * 107.48727 * 0.27502 * 6 5 4 8 8 Cl 1.73607 * 125.92186 * 180.09289 * 7 6 5 9 9 N 1.35722 * 108.14998 * 0.06080 * 7 6 5 10 10 C 1.46810 * 128.04904 * 179.74724 * 9 7 6 11 11 C 1.53163 * 108.26766 * 196.09357 * 10 9 7 12 12 N 1.46945 * 109.98887 * 310.11910 * 11 10 9 13 13 C 1.46897 * 111.00374 * 195.21913 * 12 11 10 14 14 C 1.53001 * 109.47208 * 65.83340 * 13 12 11 15 15 C 1.52995 * 109.47052 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46895 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00294 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99921 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99989 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99994 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46750 * 90.00201 * 20 18 16 22 22 H 1.48501 * 109.47307 * 209.99926 * 20 18 16 23 23 H 1.48493 * 109.47142 * 330.00510 * 20 18 16 24 24 H 1.08998 * 109.46944 * 299.30704 * 1 2 3 25 25 H 1.08998 * 109.47126 * 59.30272 * 1 2 3 26 26 H 1.08991 * 109.47260 * 179.30246 * 1 2 3 27 27 H 1.08002 * 126.33200 * 359.80497 * 5 4 2 28 28 H 1.07998 * 126.25250 * 180.29404 * 6 5 4 29 29 H 1.09000 * 109.71337 * 316.32501 * 10 9 7 30 30 H 1.08994 * 109.71705 * 76.96998 * 10 9 7 31 31 H 1.09005 * 109.48494 * 189.86352 * 11 10 9 32 32 H 1.08999 * 109.10315 * 70.14710 * 11 10 9 33 33 H 1.09000 * 109.47368 * 185.83189 * 13 12 11 34 34 H 1.09004 * 109.46899 * 305.82989 * 13 12 11 35 35 H 1.09000 * 109.46833 * 300.00177 * 14 13 12 36 36 H 1.08995 * 109.46692 * 59.99823 * 14 13 12 37 37 H 1.09000 * 109.47285 * 299.99703 * 15 14 13 38 38 H 1.08993 * 109.47179 * 60.00118 * 15 14 13 39 39 H 0.96996 * 119.99890 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0401 -0.7251 1.2215 5 6 1.6149 -0.6161 2.4885 6 6 2.3900 -1.4997 3.2699 7 6 3.2666 -2.1114 2.4424 8 17 4.4478 -3.2963 2.9057 9 7 3.0627 -1.6390 1.1865 10 6 3.7760 -2.0028 -0.0441 11 6 3.4779 -0.9384 -1.1043 12 7 2.0291 -0.7084 -1.1918 13 6 1.6849 0.0202 -2.4200 14 6 1.9931 -0.8558 -3.6360 15 6 1.6351 -0.0966 -4.9152 16 6 1.9381 -0.9597 -6.1129 17 1 2.3456 -1.9504 -5.9755 18 6 1.6960 -0.4841 -7.3842 19 7 1.9599 -1.2375 -8.4294 20 14 0.9918 1.2297 -7.6220 21 1 2.1019 2.2095 -7.7353 22 1 0.1749 1.2616 -8.8618 23 1 0.1389 1.5803 -6.4581 24 1 -0.3633 0.5030 0.8961 25 1 -0.3633 0.5246 -0.8836 26 1 -0.3633 -1.0275 -0.0125 27 1 0.8226 0.0257 2.8445 28 1 2.2991 -1.6584 4.3343 29 1 4.8473 -2.0479 0.1516 30 1 3.4254 -2.9716 -0.3996 31 1 3.8504 -1.2747 -2.0719 32 1 3.9762 -0.0094 -0.8272 33 1 0.6234 0.2677 -2.4102 34 1 2.2714 0.9374 -2.4748 35 1 3.0545 -1.1033 -3.6458 36 1 1.4066 -1.7728 -3.5811 37 1 0.5737 0.1513 -4.9057 38 1 2.2219 0.8202 -4.9698 39 1 1.7892 -0.9030 -9.3238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283882468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:31 Heat of formation + Delta-G solvation = 42.596565 kcal Electronic energy + Delta-G solvation = -19907.317586 eV Core-core repulsion = 16876.373572 eV Total energy + Delta-G solvation = -3030.944014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75164 -38.12284 -36.74811 -34.19347 -33.97815 -32.15307 -30.44898 -28.84988 -27.62803 -26.55350 -23.44828 -23.01398 -21.30610 -20.71685 -20.05757 -18.72061 -17.57661 -16.72138 -15.98598 -15.62678 -14.92169 -14.67364 -14.43470 -14.08554 -13.98421 -13.58063 -13.09017 -12.88919 -12.64755 -12.58847 -12.20492 -12.00891 -11.92119 -11.80325 -11.50725 -11.45418 -11.29789 -11.02291 -10.98106 -10.64606 -9.99445 -9.74547 -9.64274 -9.21632 -8.83882 -8.56755 -8.46303 -8.02921 -6.06918 -4.05179 1.62665 1.93431 2.74872 2.83308 3.27747 3.35701 3.38555 3.70734 4.41587 4.42331 4.49313 4.82120 4.91666 5.08638 5.12929 5.26565 5.31954 5.36517 5.43532 5.54796 5.62492 5.65076 5.67377 5.77829 5.96957 6.00736 6.05718 6.21224 6.41949 6.43886 6.65722 6.80395 6.90131 6.93380 7.04903 7.11682 7.27880 7.39166 7.76587 8.51251 8.98134 9.55456 11.06601 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.003449 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.862092 B = 8116.188949 C = 8827.358940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.059 0.941 4 C 0.049 3.951 5 C -0.185 4.185 6 C -0.175 4.175 7 C 0.059 3.941 8 Cl -0.031 7.031 9 N -0.433 5.433 10 C 0.107 3.893 11 C 0.037 3.963 12 N -0.535 5.535 13 C 0.051 3.949 14 C -0.098 4.098 15 C -0.013 4.013 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 1.601 23.123 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.038 3.962 3 H 0.076 0.924 4 C -0.064 4.064 5 C -0.210 4.210 6 C -0.201 4.201 7 C -0.078 4.078 8 Cl -0.003 7.003 9 N -0.112 5.112 10 C -0.014 4.014 11 C -0.091 4.091 12 N -0.260 5.260 13 C -0.075 4.075 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.027 0.973 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.733 0.906 22.635 22.719 hybrid contribution 0.342 1.380 -0.223 1.439 sum 2.075 2.287 22.412 22.624 Atomic orbital electron populations 1.21791 0.92231 1.03333 1.02056 1.20368 0.96344 0.94108 0.85331 0.92354 1.20395 0.93035 0.96723 0.96228 1.20329 1.04339 1.04895 0.91420 1.20680 0.98810 1.01493 0.99145 1.20648 1.00269 1.01005 0.85879 1.98362 1.56303 1.55161 1.90486 1.44186 1.28235 1.32721 1.06025 1.22179 0.96749 1.00621 0.81862 1.22414 0.89581 0.97313 0.99804 1.62194 1.12395 1.49168 1.02276 1.22412 1.01211 0.95350 0.88537 1.21507 1.00706 0.98780 0.92559 1.19542 0.96313 0.95881 0.93305 1.21124 1.42819 1.02555 0.89295 0.91054 1.25043 0.95081 0.97392 0.96033 1.69914 1.48954 1.37069 0.98337 0.86772 0.79613 0.85104 0.77735 1.20383 1.21381 1.19003 0.91743 0.91543 0.91296 0.83907 0.83847 0.89099 0.88989 0.87194 0.93926 0.90223 0.94961 0.92915 0.91785 0.96549 0.97281 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.90 37.16 0.33 -1.12 16 2 C 0.15 1.77 2.65 -68.50 -0.18 1.58 16 3 H 0.06 0.68 8.13 -51.92 -0.42 0.26 16 4 C 0.05 0.60 6.17 -81.54 -0.50 0.10 16 5 C -0.19 -2.11 10.27 -39.94 -0.41 -2.52 16 6 C -0.17 -1.99 10.85 -39.57 -0.43 -2.42 16 7 C 0.06 0.72 7.47 -16.92 -0.13 0.59 16 8 Cl -0.03 -0.33 29.13 -51.86 -1.51 -1.84 16 9 N -0.43 -5.42 3.16 -108.76 -0.34 -5.76 16 10 C 0.11 1.21 7.07 -3.79 -0.03 1.18 16 11 C 0.04 0.45 5.39 -3.72 -0.02 0.43 16 12 N -0.54 -7.23 4.42 -227.38 -1.00 -8.23 16 13 C 0.05 0.77 4.84 -3.83 -0.02 0.75 16 14 C -0.10 -1.82 5.11 -26.73 -0.14 -1.96 16 15 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 16 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 20 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 24 H 0.06 0.56 7.74 -51.93 -0.40 0.16 16 25 H 0.07 0.70 6.47 -51.93 -0.34 0.37 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.14 1.31 7.85 -52.49 -0.41 0.90 16 28 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.11 1.37 5.93 -51.93 -0.31 1.06 16 32 H 0.04 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.08 1.16 6.15 -51.93 -0.32 0.84 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.05 0.97 6.28 -51.93 -0.33 0.64 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -30.53 323.21 -9.78 -40.31 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.83 Total: -2.25 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.06 Total: -16.90 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.57 Total: -40.95 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.53 -9.78 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283882468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.911 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds