Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35733 * 117.00448 * 2 1 4 4 C 1.41854 * 126.78647 * 179.97438 * 3 2 1 5 5 C 1.36662 * 103.80958 * 179.97438 * 4 3 2 6 6 C 1.47542 * 126.88018 * 179.97438 * 5 4 3 7 7 O 1.21583 * 119.99892 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00165 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27934 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53010 * 109.47146 * 299.99645 * 10 9 8 12 12 C 1.53000 * 109.47166 * 59.99736 * 10 9 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00420 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99928 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47172 * 90.00092 * 18 16 14 20 20 H 1.48503 * 109.46928 * 209.99961 * 18 16 14 21 21 H 1.48499 * 109.46876 * 329.99803 * 18 16 14 22 22 O 1.34662 * 106.24023 * 0.23259 * 5 4 3 23 23 N 1.20870 * 111.63611 * 359.58618 * 22 5 4 24 24 H 1.08998 * 109.47719 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47412 * 300.00448 * 1 2 3 26 26 H 1.09001 * 109.46791 * 60.00180 * 1 2 3 27 27 H 1.08000 * 128.09276 * 359.97438 * 4 3 2 28 28 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 30 30 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 31 31 H 1.09003 * 109.46863 * 59.99870 * 11 10 9 32 32 H 1.09001 * 109.47172 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.46753 * 300.00454 * 11 10 9 34 34 H 1.08990 * 109.47258 * 60.00092 * 12 10 9 35 35 H 1.09001 * 109.46739 * 180.02562 * 12 10 9 36 36 H 1.08999 * 109.47407 * 299.99599 * 12 10 9 37 37 H 1.08990 * 109.47021 * 299.99845 * 13 10 9 38 38 H 1.09002 * 109.46620 * 60.00037 * 13 10 9 39 39 H 0.97000 * 120.00497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 0.0005 5 6 3.5392 2.8136 -0.0003 6 6 4.7786 3.6140 0.0003 7 8 5.8605 3.0592 0.0012 8 7 4.7116 4.9601 -0.0002 9 6 5.9423 5.7547 -0.0058 10 6 5.5883 7.2432 -0.0120 11 6 4.7666 7.5667 -1.2616 12 6 4.7705 7.5782 1.2369 13 6 6.8736 8.0732 -0.0172 14 6 6.5248 9.5392 -0.0241 15 1 5.4900 9.8481 -0.0242 16 6 7.5269 10.4862 -0.0290 17 7 8.7872 10.1101 -0.0283 18 14 7.0947 12.3035 -0.0368 19 1 6.9812 12.7913 1.3612 20 1 8.1592 13.0625 -0.7410 21 1 5.8000 12.5014 -0.7368 22 8 2.2759 3.2801 0.0040 23 7 1.4686 2.3805 -0.0009 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.2442 0.7259 0.0014 28 1 3.8484 5.4027 -0.0013 29 1 6.5276 5.5242 0.8844 30 1 6.5249 5.5161 -0.8955 31 1 3.8509 6.9754 -1.2575 32 1 4.5140 8.6271 -1.2659 33 1 5.3493 7.3280 -2.1514 34 1 5.3557 7.3477 2.1270 35 1 4.5179 8.6385 1.2321 36 1 3.8548 6.9870 1.2410 37 1 7.4585 7.8426 0.8731 38 1 7.4565 7.8345 -0.9069 39 1 9.4922 10.7763 -0.0315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360413813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -19.926184 kcal Electronic energy + Delta-G solvation = -21838.699594 eV Core-core repulsion = 18364.335226 eV Total energy + Delta-G solvation = -3474.364368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.22545 -39.76458 -39.19948 -37.24730 -33.94157 -33.43006 -32.37043 -31.76210 -28.04287 -27.25256 -26.59595 -26.54463 -24.06074 -23.56694 -22.53060 -20.89470 -19.46173 -18.20665 -17.98131 -17.14442 -16.45947 -16.15308 -15.90562 -15.89181 -15.16383 -15.05786 -14.53509 -14.09615 -13.70786 -13.68317 -13.18324 -12.81865 -12.60867 -12.27530 -12.24297 -12.08394 -11.73279 -11.21920 -11.03773 -10.87703 -10.66697 -10.48864 -10.40976 -10.28121 -10.10611 -9.92899 -9.65599 -9.24860 -8.97943 -8.96745 -8.37847 -6.02006 -4.03339 0.55672 1.81968 2.32165 2.43454 2.91412 3.30127 3.31337 3.37494 3.39404 3.81447 4.43704 4.47849 4.70050 4.75453 4.75473 4.92671 5.08554 5.33618 5.37970 5.43287 5.54575 5.69552 6.12010 6.13411 6.17641 6.32759 6.33929 6.56212 6.60267 6.65846 7.01223 7.04093 7.07040 7.34743 7.60793 7.72263 7.78412 7.96080 7.99578 8.37936 9.01325 9.60055 11.09385 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.044704 B = 0.002963 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.198188 B = 9448.381878 C = 9872.892190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.203 3.797 4 C -0.159 4.159 5 C -0.050 4.050 6 C 0.597 3.403 7 O -0.512 6.512 8 N -0.700 5.700 9 C 0.125 3.875 10 C -0.073 4.073 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 O 0.117 5.883 23 N -0.391 5.391 24 H 0.107 0.893 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.190 0.810 28 H 0.407 0.593 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 -16.381 0.061 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.006 3.994 4 C -0.181 4.181 5 C -0.116 4.116 6 C 0.378 3.622 7 O -0.388 6.388 8 N -0.351 5.351 9 C 0.003 3.997 10 C -0.073 4.073 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.002 4.002 14 C -0.550 4.550 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 O 0.051 5.949 23 N -0.115 5.115 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.208 0.792 28 H 0.243 0.757 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.020 -16.582 0.056 22.373 hybrid contribution -0.169 0.797 0.003 0.815 sum -15.188 -15.785 0.059 21.905 Atomic orbital electron populations 1.23106 0.76570 1.04273 1.02509 1.86219 1.22765 1.20398 1.89375 1.21903 0.90670 0.85826 1.00979 1.22176 0.94368 0.95017 1.06573 1.24268 0.87071 0.93952 1.06326 1.16515 0.84888 0.82374 0.78388 1.90892 1.26323 1.71293 1.50303 1.46166 1.12130 1.04810 1.72013 1.21839 0.84351 0.90964 1.02544 1.20935 0.99800 0.91261 0.95326 1.21793 0.97545 1.02167 0.97192 1.21790 0.97571 1.02140 0.97197 1.19099 0.89708 0.93745 0.97604 1.21170 0.92634 0.90809 1.50358 0.92204 1.25010 0.95081 0.98864 0.95522 1.69958 0.98908 1.33696 1.50804 0.86648 0.78047 0.85581 0.78034 1.20774 1.21353 1.19930 1.84955 1.11884 1.29640 1.68446 1.73995 1.15911 0.96686 1.24916 0.87481 0.92091 0.92100 0.79245 0.75690 0.90986 0.90995 0.95103 0.91238 0.93219 0.93214 0.91252 0.95095 0.96223 0.96220 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.28 -2.87 10.57 -18.91 -0.20 -3.07 16 3 C 0.20 2.35 8.00 -16.72 -0.13 2.22 16 4 C -0.16 -1.80 10.97 -38.77 -0.43 -2.22 16 5 C -0.05 -0.61 7.29 -36.36 -0.26 -0.87 16 6 C 0.60 8.40 7.82 -12.47 -0.10 8.30 16 7 O -0.51 -8.73 16.91 5.29 0.09 -8.64 16 8 N -0.70 -9.50 4.96 -61.35 -0.30 -9.80 16 9 C 0.12 2.02 4.56 -4.04 -0.02 2.01 16 10 C -0.07 -1.30 0.54 -154.50 -0.08 -1.38 16 11 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.19 7.65 -34.44 -0.26 -13.46 16 15 H 0.06 1.48 5.68 -52.49 -0.30 1.19 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 22 O 0.12 1.39 11.03 15.50 0.17 1.57 16 23 N -0.39 -4.76 11.50 30.47 0.35 -4.40 16 24 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.41 4.80 5.99 -40.82 -0.24 4.56 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 36 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -30.02 330.53 -4.32 -34.34 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.30 Total: 0.06 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.19 Total: -5.68 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.78 Total: -39.38 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.02 -4.32 -34.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360413813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.410 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds