Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38264 * 119.97241 * 2 1 4 4 C 1.38266 * 120.11064 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.97128 * 180.02562 * 4 3 2 6 6 C 1.38135 * 120.05890 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94234 * 359.97438 * 6 4 3 8 8 O 1.35909 * 120.05660 * 179.97438 * 7 6 4 9 9 C 1.42902 * 116.99859 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46697 * 179.97438 * 9 8 7 11 11 C 1.38630 * 119.74253 * 90.00487 * 10 9 8 12 12 C 1.37623 * 120.24117 * 180.27159 * 11 10 9 13 13 C 1.40707 * 119.74849 * 359.52215 * 12 11 10 14 14 C 1.41400 * 120.24843 * 180.22492 * 13 12 11 15 15 H 1.07994 * 120.00480 * 204.52708 * 14 13 12 16 16 C 1.39950 * 119.99509 * 24.53120 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.72383 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.72017 * 16 14 13 19 19 H 1.48499 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99981 * 18 16 14 21 21 H 1.48490 * 109.47155 * 239.99623 * 18 16 14 22 22 C 1.40715 * 119.51064 * 0.47652 * 13 12 11 23 23 C 1.37618 * 119.74364 * 359.74989 * 22 13 12 24 24 C 1.38146 * 119.97363 * 180.24033 * 2 1 3 25 25 H 1.08998 * 109.47190 * 89.99164 * 1 2 3 26 26 H 1.09000 * 109.47249 * 209.99434 * 1 2 3 27 27 H 1.09001 * 109.46919 * 329.99575 * 1 2 3 28 28 H 1.08006 * 119.94399 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47036 * 269.97944 * 5 4 3 30 30 H 1.08995 * 109.47011 * 29.97432 * 5 4 3 31 31 H 1.08991 * 109.47228 * 149.97900 * 5 4 3 32 32 H 1.07995 * 120.03371 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.46817 * 60.00622 * 9 8 7 34 34 H 1.08991 * 109.47573 * 300.00309 * 9 8 7 35 35 H 1.08001 * 119.88189 * 0.02562 * 11 10 9 36 36 H 1.08002 * 120.12205 * 179.72192 * 12 11 10 37 37 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.12804 * 179.73261 * 22 13 12 39 39 H 1.08002 * 119.87235 * 180.02562 * 23 22 13 40 40 H 1.08005 * 120.02343 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3302 2.5084 0.0001 6 6 4.2752 0.0072 -0.0005 7 6 3.5845 -1.1960 0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4891 -3.5716 0.0018 10 6 4.4089 -4.7654 0.0002 11 6 4.8309 -5.3100 1.2032 12 6 5.6754 -6.3966 1.2138 13 6 6.1022 -6.9610 -0.0024 14 6 6.9660 -8.0805 -0.0038 15 1 7.5990 -8.2732 -0.8573 16 6 7.0005 -8.9390 1.1009 17 7 6.0217 -8.9278 1.9688 18 14 8.4442 -10.1008 1.3361 19 1 9.4119 -9.9193 0.2244 20 1 9.1136 -9.8033 2.6279 21 1 7.9552 -11.5029 1.3434 22 6 5.6675 -6.3998 -1.2174 23 6 4.8269 -5.3102 -1.2040 24 6 2.1972 -1.1967 -0.0050 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5108 2.8241 -1.0275 30 1 3.7389 3.2661 0.5142 31 1 5.2829 2.3806 0.5137 32 1 5.3552 0.0102 -0.0014 33 1 2.8590 -3.5977 -0.8873 34 1 2.8617 -3.5970 0.8926 35 1 4.4990 -4.8775 2.1355 36 1 6.0065 -6.8166 2.1521 37 1 6.0458 -9.5226 2.7347 38 1 5.9924 -6.8223 -2.1567 39 1 4.4916 -4.8781 -2.1353 40 1 1.6571 -2.1320 -0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399144167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -16.809087 kcal Electronic energy + Delta-G solvation = -20358.454040 eV Core-core repulsion = 17295.074102 eV Total energy + Delta-G solvation = -3063.379938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99570 -38.01837 -37.04046 -33.89544 -33.54317 -31.32079 -30.15888 -29.34503 -27.46732 -27.19787 -26.44555 -23.85686 -21.57309 -21.09127 -20.82310 -19.80727 -17.38622 -17.24070 -16.13164 -15.83417 -15.50230 -15.17195 -14.38573 -13.97150 -13.86846 -13.80930 -13.30426 -13.22877 -13.03162 -12.88942 -12.61895 -12.45055 -12.01824 -11.88621 -11.65079 -11.54198 -11.42483 -11.17715 -11.08990 -10.87962 -10.58262 -10.45468 -10.29667 -9.67522 -9.46023 -9.21075 -8.56637 -7.92509 -7.54667 -7.44284 -6.85832 -4.44940 1.38530 1.58871 2.55365 3.01557 3.02461 3.05021 3.09359 3.81506 3.84755 3.87621 4.58722 4.73793 4.81127 5.14535 5.23220 5.29046 5.39742 5.47748 5.53249 5.54271 5.62498 5.63893 5.64132 5.76434 5.77678 5.94087 6.02771 6.20733 6.27311 6.32535 6.49107 6.58695 6.66829 6.88258 6.95197 6.98947 7.19715 7.27989 7.53275 7.72599 7.87095 7.97648 8.02575 8.20839 8.55602 8.80332 8.88432 10.08408 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034124 B = 0.002911 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.333857 B = 9615.947851 C = 9917.635523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.172 4.172 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.167 4.167 7 C 0.149 3.851 8 O -0.308 6.308 9 C 0.127 3.873 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.170 4.170 13 C 0.118 3.882 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.230 4.230 23 C -0.065 4.065 24 C -0.221 4.221 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.282 0.718 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 14.713 -1.356 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.190 4.190 4 C -0.048 4.048 5 C -0.169 4.169 6 C -0.186 4.186 7 C 0.102 3.898 8 O -0.222 6.222 9 C 0.054 3.946 10 C -0.234 4.234 11 C -0.095 4.095 12 C -0.189 4.189 13 C 0.115 3.885 14 C -0.486 4.486 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.412 5.412 18 Si 0.733 3.267 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.250 4.250 23 C -0.083 4.083 24 C -0.239 4.239 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.551 14.523 -1.141 15.973 hybrid contribution 0.315 -0.751 0.184 0.835 sum -6.235 13.773 -0.956 15.149 Atomic orbital electron populations 1.20797 0.91336 1.02665 1.02275 1.19650 0.95712 0.92569 0.96696 1.20678 0.93370 0.97205 1.07750 1.19627 0.93595 0.94472 0.97108 1.20778 0.99972 0.93825 1.02316 1.20305 1.00186 0.89467 1.08620 1.19168 0.90516 0.86985 0.93120 1.86353 1.36737 1.12110 1.86973 1.21454 0.92703 0.80815 0.99639 1.18638 1.11033 0.99668 0.94100 1.20532 0.97517 0.96326 0.95091 1.21295 1.02030 0.96788 0.98812 1.17687 0.89023 0.90821 0.90934 1.19698 1.19912 1.07134 1.01834 0.90165 1.25970 0.96087 0.97550 0.94741 1.69832 1.28189 1.32576 1.10597 0.86240 0.81552 0.79402 0.79456 1.18287 1.19588 1.19897 1.20952 1.05359 1.01541 0.97135 1.20374 0.96930 0.95817 0.95173 1.21163 0.93259 0.98794 1.10726 0.91144 0.91529 0.91588 0.86474 0.91116 0.91584 0.91405 0.85480 0.92997 0.92901 0.89364 0.86275 0.90733 0.88748 0.89351 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.05 -0.58 5.88 -104.64 -0.62 -1.20 16 3 C -0.17 -2.05 9.35 -39.56 -0.37 -2.42 16 4 C -0.05 -0.60 5.88 -104.65 -0.62 -1.21 16 5 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 6 C -0.17 -2.48 9.64 -39.44 -0.38 -2.86 16 7 C 0.15 2.47 6.69 -39.22 -0.26 2.21 16 8 O -0.31 -5.95 10.12 -19.45 -0.20 -6.15 16 9 C 0.13 2.38 4.85 36.01 0.17 2.56 16 10 C -0.23 -5.22 5.53 -104.33 -0.58 -5.80 16 11 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 12 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 13 C 0.12 3.14 5.57 -106.83 -0.60 2.54 16 14 C -0.46 -11.99 9.06 -37.74 -0.34 -12.33 16 15 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 16 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.79 -20.00 10.95 55.55 0.61 -19.40 16 18 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.23 -5.67 9.80 -38.87 -0.38 -6.06 16 23 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 24 C -0.22 -3.24 8.69 -39.43 -0.34 -3.58 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.05 0.89 7.59 -51.93 -0.39 0.49 16 34 H 0.05 0.92 7.62 -51.93 -0.40 0.52 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.13 1.75 6.30 -52.48 -0.33 1.42 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -27.98 338.90 -9.92 -37.90 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.63 Total: 5.79 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: -4.78 Total: -36.55 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.61 Total: -19.40 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.20 Total: -6.15 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.98 -9.92 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399144167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.094 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds