Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38264 * 119.97241 * 2 1 4 4 C 1.38266 * 120.11064 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.97128 * 180.02562 * 4 3 2 6 6 C 1.38135 * 120.05890 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94234 * 359.97438 * 6 4 3 8 8 O 1.35909 * 120.05660 * 179.97438 * 7 6 4 9 9 C 1.42902 * 116.99859 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46697 * 179.97438 * 9 8 7 11 11 C 1.38630 * 119.74253 * 90.00487 * 10 9 8 12 12 C 1.37623 * 120.24117 * 180.27159 * 11 10 9 13 13 C 1.40707 * 119.74849 * 359.52215 * 12 11 10 14 14 C 1.41400 * 120.24843 * 180.22492 * 13 12 11 15 15 H 1.07994 * 120.00480 * 204.52708 * 14 13 12 16 16 C 1.39950 * 119.99509 * 24.53120 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.72383 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.72017 * 16 14 13 19 19 H 1.48499 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99981 * 18 16 14 21 21 H 1.48490 * 109.47155 * 239.99623 * 18 16 14 22 22 C 1.40715 * 119.51064 * 0.47652 * 13 12 11 23 23 C 1.37618 * 119.74364 * 359.74989 * 22 13 12 24 24 C 1.38146 * 119.97363 * 180.24033 * 2 1 3 25 25 H 1.08998 * 109.47190 * 89.99164 * 1 2 3 26 26 H 1.09000 * 109.47249 * 209.99434 * 1 2 3 27 27 H 1.09001 * 109.46919 * 329.99575 * 1 2 3 28 28 H 1.08006 * 119.94399 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47036 * 269.97944 * 5 4 3 30 30 H 1.08995 * 109.47011 * 29.97432 * 5 4 3 31 31 H 1.08991 * 109.47228 * 149.97900 * 5 4 3 32 32 H 1.07995 * 120.03371 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.46817 * 60.00622 * 9 8 7 34 34 H 1.08991 * 109.47573 * 300.00309 * 9 8 7 35 35 H 1.08001 * 119.88189 * 0.02562 * 11 10 9 36 36 H 1.08002 * 120.12205 * 179.72192 * 12 11 10 37 37 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.12804 * 179.73261 * 22 13 12 39 39 H 1.08002 * 119.87235 * 180.02562 * 23 22 13 40 40 H 1.08005 * 120.02343 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3302 2.5084 0.0001 6 6 4.2752 0.0072 -0.0005 7 6 3.5845 -1.1960 0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4891 -3.5716 0.0018 10 6 4.4089 -4.7654 0.0002 11 6 4.8309 -5.3100 1.2032 12 6 5.6754 -6.3966 1.2138 13 6 6.1022 -6.9610 -0.0024 14 6 6.9660 -8.0805 -0.0038 15 1 7.5990 -8.2732 -0.8573 16 6 7.0005 -8.9390 1.1009 17 7 6.0217 -8.9278 1.9688 18 14 8.4442 -10.1008 1.3361 19 1 9.4119 -9.9193 0.2244 20 1 9.1136 -9.8033 2.6279 21 1 7.9552 -11.5029 1.3434 22 6 5.6675 -6.3998 -1.2174 23 6 4.8269 -5.3102 -1.2040 24 6 2.1972 -1.1967 -0.0050 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5108 2.8241 -1.0275 30 1 3.7389 3.2661 0.5142 31 1 5.2829 2.3806 0.5137 32 1 5.3552 0.0102 -0.0014 33 1 2.8590 -3.5977 -0.8873 34 1 2.8617 -3.5970 0.8926 35 1 4.4990 -4.8775 2.1355 36 1 6.0065 -6.8166 2.1521 37 1 6.0458 -9.5226 2.7347 38 1 5.9924 -6.8223 -2.1567 39 1 4.4916 -4.8781 -2.1353 40 1 1.6571 -2.1320 -0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399144167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -28.523765 kcal Electronic energy + Delta-G solvation = -20358.962026 eV Core-core repulsion = 17295.074102 eV Total energy + Delta-G solvation = -3063.887924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17295 -39.61650 -38.49981 -35.73314 -34.43914 -32.84584 -31.52767 -31.22178 -28.96291 -28.05499 -27.61393 -25.53766 -22.99033 -22.72481 -22.17290 -21.23507 -19.29234 -18.46132 -17.49750 -17.12034 -16.87303 -16.69009 -15.94428 -15.62136 -15.24674 -14.77629 -14.59941 -14.47894 -14.09913 -13.98432 -13.90512 -13.83512 -13.37343 -13.29223 -13.03528 -12.91517 -12.70605 -12.62548 -12.37629 -12.34213 -12.13830 -11.77963 -11.58096 -11.45665 -11.30854 -11.05239 -9.56333 -9.46174 -9.36035 -9.06017 -8.70749 -6.41405 0.36570 0.52173 0.76617 1.08329 1.37144 1.44554 1.52997 2.18109 2.38124 2.77939 2.82054 3.70392 3.81343 3.88992 4.10707 4.11862 4.15354 4.33988 4.42278 4.46409 4.49529 4.51327 4.53479 4.69475 4.82256 4.85670 4.87531 4.97676 5.01327 5.10250 5.12986 5.28311 5.33906 5.37691 5.42652 5.59378 5.62914 5.68781 5.85409 5.96244 6.03564 6.12658 6.29901 6.57769 6.62325 6.86729 6.95180 8.26637 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034124 B = 0.002911 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.333857 B = 9615.947851 C = 9917.635523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.049 4.049 3 C -0.169 4.169 4 C -0.048 4.048 5 C -0.111 4.111 6 C -0.187 4.187 7 C 0.117 3.883 8 O -0.334 6.334 9 C 0.136 3.864 10 C -0.229 4.229 11 C -0.083 4.083 12 C -0.193 4.193 13 C 0.087 3.913 14 C -0.494 4.494 15 H 0.079 0.921 16 C 0.035 3.965 17 N -0.819 5.819 18 Si 0.985 3.015 19 H -0.258 1.258 20 H -0.264 1.264 21 H -0.263 1.263 22 C -0.246 4.246 23 C -0.068 4.068 24 C -0.233 4.233 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.291 0.709 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 16.715 -1.568 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.049 4.049 3 C -0.187 4.187 4 C -0.048 4.048 5 C -0.168 4.168 6 C -0.206 4.206 7 C 0.071 3.929 8 O -0.249 6.249 9 C 0.062 3.938 10 C -0.231 4.231 11 C -0.101 4.101 12 C -0.213 4.213 13 C 0.084 3.916 14 C -0.523 4.523 15 H 0.097 0.903 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.805 3.195 19 H -0.181 1.181 20 H -0.188 1.188 21 H -0.188 1.188 22 C -0.265 4.265 23 C -0.086 4.086 24 C -0.252 4.252 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.166 0.834 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.735 16.549 -1.359 18.318 hybrid contribution 0.543 -1.147 0.224 1.288 sum -7.192 15.402 -1.135 17.037 Atomic orbital electron populations 1.20865 0.88892 1.03800 1.03364 1.20081 0.97554 0.92019 0.95285 1.21116 0.93291 0.98304 1.05960 1.20040 0.94286 0.94907 0.95555 1.20853 1.00012 0.92452 1.03433 1.20502 1.00312 0.90043 1.09763 1.19448 0.91559 0.86268 0.95587 1.86239 1.37591 1.12947 1.88129 1.21299 0.91716 0.79698 1.01098 1.19055 1.10098 1.00511 0.93389 1.20779 0.97012 0.95745 0.96591 1.21267 1.03715 0.98094 0.98200 1.18042 0.89994 0.91720 0.91828 1.19934 1.21056 1.08206 1.03093 0.90328 1.26836 0.98533 0.98891 0.93856 1.69874 1.29764 1.33601 1.11197 0.85113 0.77676 0.77258 0.79408 1.18117 1.18828 1.18771 1.21173 1.06044 1.02387 0.96944 1.20702 0.96127 0.95124 0.96630 1.21307 0.92548 1.00016 1.11295 0.89934 0.91323 0.89613 0.83358 0.89872 0.89497 0.91260 0.85958 0.91241 0.91767 0.87753 0.87824 0.89869 0.87973 0.86573 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 2 C -0.05 -1.11 5.88 -19.88 -0.12 -1.23 16 3 C -0.17 -3.49 9.35 22.28 0.21 -3.28 16 4 C -0.05 -1.09 5.88 -19.88 -0.12 -1.21 16 5 C -0.11 -1.71 10.01 71.24 0.71 -0.99 16 6 C -0.19 -5.49 9.64 22.36 0.22 -5.27 16 7 C 0.12 3.84 6.69 22.51 0.15 4.00 16 8 O -0.33 -12.94 10.12 -92.53 -0.94 -13.88 16 9 C 0.14 4.98 4.85 71.24 0.35 5.33 16 10 C -0.23 -10.29 5.53 -19.68 -0.11 -10.40 16 11 C -0.08 -4.02 9.67 22.22 0.21 -3.80 16 12 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 13 C 0.09 4.80 5.57 -21.29 -0.12 4.68 16 14 C -0.49 -26.94 9.06 23.46 0.21 -26.73 16 15 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 16 C 0.03 1.75 5.14 85.26 0.44 2.19 16 17 N -0.82 -42.86 10.95 21.83 0.24 -42.62 16 18 Si 0.99 38.08 29.59 68.60 2.03 40.11 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 22 C -0.25 -12.43 9.80 22.73 0.22 -12.21 16 23 C -0.07 -3.09 9.67 22.22 0.21 -2.87 16 24 C -0.23 -6.54 8.69 22.37 0.19 -6.35 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 28 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.07 2.28 7.59 -2.38 -0.02 2.26 16 34 H 0.06 2.18 7.62 -2.39 -0.02 2.16 16 35 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 37 H 0.29 13.60 8.30 -92.70 -0.77 12.83 16 38 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.13 3.42 6.30 -2.91 -0.02 3.41 16 Total: -1.00 -62.61 338.90 5.94 -56.68 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 1.02 Total: 29.19 kcal Atomic # 6 Polarization: -73.05 SS G_CDS: 3.58 Total: -69.47 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.24 Total: -42.62 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.94 Total: -13.88 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -62.61 5.94 -56.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399144167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.152 kcal (2) G-P(sol) polarization free energy of solvation -62.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds