Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99531 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00000 * 6 5 4 9 9 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 10 10 H 1.07996 * 119.99928 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99611 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00327 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99743 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.46828 * 90.00241 * 13 11 9 15 15 H 1.48494 * 109.47178 * 209.99936 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00183 * 13 11 9 17 17 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 18 18 C 1.38653 * 120.79675 * 265.00217 * 17 2 1 19 19 C 1.38186 * 119.17450 * 179.97438 * 18 17 2 20 20 N 1.31882 * 120.80027 * 359.97438 * 19 18 17 21 21 C 1.31849 * 121.73813 * 0.02562 * 20 19 18 22 22 C 1.38352 * 120.74114 * 359.73959 * 21 20 19 23 23 Cl 1.73600 * 120.43504 * 180.28720 * 22 21 20 24 24 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 26 26 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 27 27 H 1.00898 * 110.99995 * 38.95403 * 4 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 30 30 H 1.09000 * 109.46986 * 60.00203 * 7 6 5 31 31 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 33 33 H 1.08992 * 109.47554 * 59.99639 * 8 6 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.46870 * 299.99783 * 8 6 5 36 36 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 37 37 H 1.07995 * 120.40894 * 359.97438 * 18 17 2 38 38 H 1.08004 * 119.60003 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.63161 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 1.6472 -1.6892 3.8955 8 6 3.9934 -1.0849 3.2852 9 6 2.6598 0.4059 4.7515 10 1 2.3639 1.4381 4.6357 11 6 3.0959 -0.0531 5.9763 12 7 3.4558 -1.3102 6.1174 13 14 3.1756 1.1106 7.4354 14 1 1.8817 1.0807 8.1636 15 1 4.2671 0.6859 8.3482 16 1 3.4412 2.4901 6.9544 17 6 2.0323 -0.7104 -1.2304 18 6 2.3668 -2.0553 -1.1867 19 6 2.8236 -2.6735 -2.3351 20 7 2.9424 -2.0002 -3.4628 21 6 2.6341 -0.7207 -3.5425 22 6 2.1656 -0.0359 -2.4354 23 17 1.7550 1.6469 -2.5512 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.6006 -2.3682 3.0441 31 1 2.0128 -2.2271 4.7700 32 1 0.6516 -1.2958 4.1013 33 1 4.6694 -0.2612 3.0564 34 1 4.3596 -1.6227 4.1598 35 1 3.9468 -1.7639 2.4339 36 1 3.7622 -1.6332 6.9791 37 1 2.2715 -2.6127 -0.2666 38 1 3.0865 -3.7207 -2.3087 39 1 2.7440 -0.2026 -4.4837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421861618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = 19.782495 kcal Electronic energy + Delta-G solvation = -20177.989109 eV Core-core repulsion = 17146.055803 eV Total energy + Delta-G solvation = -3031.933306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39192 -37.53770 -36.70411 -35.20395 -32.31031 -31.10331 -30.79702 -28.65056 -25.62183 -25.30423 -24.77146 -23.95639 -23.05917 -20.86062 -18.61992 -17.11442 -16.68849 -16.08935 -15.74053 -15.06442 -14.60101 -14.32467 -14.10122 -13.97435 -13.78346 -12.89019 -12.78202 -12.49334 -12.27519 -12.07670 -12.02467 -11.69344 -11.34689 -11.19710 -11.16204 -10.95322 -10.68783 -10.62050 -10.23801 -10.09324 -9.63889 -9.54469 -9.43911 -9.12141 -9.01374 -8.67480 -8.32464 -7.86721 -5.94543 -4.04905 0.88039 1.12863 1.96244 3.29161 3.36634 3.39535 3.62203 4.26609 4.34725 4.44648 4.66692 4.88387 4.95085 5.16218 5.22047 5.31338 5.40781 5.56879 5.62867 5.80702 5.92936 6.07570 6.20864 6.26222 6.37113 6.47887 6.65631 6.83530 7.00437 7.11411 7.31517 7.39948 7.61612 7.71407 7.76694 7.78415 7.82872 8.16372 8.29649 8.51595 8.96217 9.60377 11.05994 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.004107 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.037248 B = 6815.748926 C = 7325.636517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 H 0.095 0.905 4 N -0.678 5.678 5 C 0.076 3.924 6 C 0.069 3.931 7 C -0.132 4.132 8 C -0.119 4.119 9 C -0.507 4.507 10 H 0.052 0.948 11 C 0.066 3.934 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.008 4.008 18 C -0.134 4.134 19 C 0.096 3.904 20 N -0.479 5.479 21 C 0.108 3.892 22 C -0.092 4.092 23 Cl -0.059 7.059 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.340 0.660 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.009 0.991 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.019 0.981 36 H 0.258 0.742 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -0.189 -15.789 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.002 3.998 3 H 0.113 0.887 4 N -0.310 5.310 5 C -0.052 4.052 6 C 0.069 3.931 7 C -0.190 4.190 8 C -0.177 4.177 9 C -0.546 4.546 10 H 0.070 0.930 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.017 4.017 18 C -0.154 4.154 19 C -0.060 4.060 20 N -0.188 5.188 21 C -0.050 4.050 22 C -0.122 4.122 23 Cl -0.030 7.030 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.409 -0.518 -16.537 16.893 hybrid contribution -1.212 1.386 1.826 2.593 sum -4.621 0.868 -14.711 15.444 Atomic orbital electron populations 1.22428 0.95803 1.02368 1.02745 1.20504 0.92916 0.97902 0.88498 0.88730 1.60707 1.56072 1.10311 1.03874 1.22203 0.98114 0.94738 0.90104 1.18094 0.92542 0.92665 0.89817 1.21837 0.97843 0.98713 1.00568 1.21640 0.97740 0.98649 0.99649 1.21089 1.43630 0.95876 0.93991 0.93004 1.24872 0.95154 0.95002 0.98468 1.69823 1.44548 1.13986 1.23942 0.86665 0.77573 0.81355 0.82781 1.20868 1.21286 1.20061 1.20332 0.93890 0.93958 0.93532 1.22087 0.98808 0.94193 1.00331 1.22889 0.94842 1.00394 0.87858 1.67785 1.15524 1.07484 1.28044 1.22659 0.94888 0.90301 0.97189 1.21986 1.06458 0.87162 0.96546 1.98366 1.92090 1.14423 1.98160 0.92345 0.91415 0.92156 0.84049 0.96441 0.92431 0.97169 0.89776 0.96187 0.96308 0.90720 0.96177 0.93170 0.83258 0.82190 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.14 37.15 0.34 -1.81 16 2 C 0.11 1.57 2.37 -68.87 -0.16 1.41 16 3 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16 4 N -0.68 -11.03 4.51 -107.95 -0.49 -11.52 16 5 C 0.08 1.50 4.38 -3.82 -0.02 1.49 16 6 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 7 C -0.13 -2.96 7.92 37.16 0.29 -2.67 16 8 C -0.12 -2.81 8.10 37.16 0.30 -2.51 16 9 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 10 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 11 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 12 N -0.88 -23.97 9.35 55.43 0.52 -23.45 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.01 -0.10 5.09 -104.28 -0.53 -0.63 16 18 C -0.13 -1.65 9.40 -39.45 -0.37 -2.02 16 19 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 20 N -0.48 -6.02 10.36 -13.22 -0.14 -6.16 16 21 C 0.11 1.26 10.99 -17.50 -0.19 1.07 16 22 C -0.09 -1.14 6.34 -39.35 -0.25 -1.39 16 23 Cl -0.06 -0.67 27.46 -51.86 -1.42 -2.10 16 24 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 25 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 26 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 27 H 0.34 5.34 6.02 -39.29 -0.24 5.11 16 28 H 0.02 0.34 7.44 -51.93 -0.39 -0.04 16 29 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 31 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.95 6.07 -51.93 -0.32 1.63 16 35 H 0.02 0.42 7.60 -51.93 -0.39 0.03 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.15 1.78 7.03 -52.49 -0.37 1.41 16 38 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 39 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -27.12 324.99 -8.49 -35.61 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.59 Total: 3.49 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.24 Total: -16.55 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.11 Total: -41.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.42 Total: -2.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.12 -8.49 -35.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421861618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.392 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds