Wall clock time and date at job start Tue Mar 31 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47037 * 59.99882 * 20 18 16 22 22 H 1.48501 * 109.46667 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47133 * 299.99829 * 20 18 16 24 24 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 26 26 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 27 27 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 28 28 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 29 29 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 34 34 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 36 36 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 37 37 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 38 38 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 39 39 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 6 6.8417 2.1632 -5.4934 15 6 6.6418 -0.3273 -5.4807 16 6 5.5533 1.0049 -7.2671 17 1 4.5177 1.0865 -7.5625 18 6 6.5395 0.9215 -8.2269 19 7 7.8006 0.8217 -7.8672 20 14 6.0844 0.9489 -10.0385 21 1 5.3836 2.2195 -10.3536 22 1 7.3171 0.8459 -10.8601 23 1 5.1908 -0.1977 -10.3418 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 6.5911 0.9310 -1.1214 30 1 5.9373 0.9934 -3.2730 31 1 3.9939 0.2471 -5.1816 32 1 4.1364 2.0214 -5.1906 33 1 7.1072 2.1472 -4.4364 34 1 7.7467 2.0872 -6.0962 35 1 6.3277 3.0961 -5.7248 36 1 5.9854 -1.1686 -5.7032 37 1 7.5468 -0.4028 -6.0835 38 1 6.9073 -0.3432 -4.4237 39 1 8.4944 0.7634 -8.5425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425614471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:47 Heat of formation + Delta-G solvation = -23.903877 kcal Electronic energy + Delta-G solvation = -22307.031532 eV Core-core repulsion = 18832.494678 eV Total energy + Delta-G solvation = -3474.536854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.04081 -39.28850 -37.98600 -36.42530 -34.04510 -33.51171 -32.14463 -30.76455 -28.45681 -26.24899 -25.79486 -25.74279 -25.26378 -23.74665 -21.40277 -20.40165 -18.97108 -18.22618 -17.89011 -16.87314 -16.39247 -15.94755 -15.82239 -15.36250 -15.11254 -14.75253 -14.65346 -14.05165 -13.40471 -12.94269 -12.88936 -12.65587 -12.48814 -12.25868 -11.68619 -11.55019 -11.46087 -11.24909 -10.89931 -10.77081 -10.45695 -10.28280 -10.25968 -9.97168 -9.81589 -9.71866 -9.70300 -9.37445 -8.86351 -8.55497 -8.39090 -6.06693 -4.16962 1.03903 1.53932 2.84961 3.27606 3.32170 3.33690 3.36451 3.50096 3.70015 4.03655 4.32551 4.37178 4.77534 5.00433 5.10594 5.17594 5.20347 5.24044 5.30670 5.49748 5.54726 5.71100 6.14505 6.24630 6.42917 6.67347 6.73914 6.84972 6.88956 6.93168 6.94994 7.28234 7.49093 7.64285 7.87213 7.94893 8.03709 8.08432 8.32108 8.51071 8.83212 9.49192 10.94757 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.003810 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.281564 B = 7347.829680 C = 8130.910375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.143 3.857 4 C 0.061 3.939 5 N -0.343 5.343 6 O 0.104 5.896 7 C -0.012 4.012 8 C -0.229 4.229 9 C 0.583 3.417 10 O -0.536 6.536 11 N -0.707 5.707 12 C 0.132 3.868 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.088 0.912 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.229 0.771 30 H 0.396 0.604 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 0.831 14.368 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.066 3.934 4 C -0.101 4.101 5 N -0.048 5.048 6 O 0.040 5.960 7 C -0.094 4.094 8 C -0.236 4.236 9 C 0.368 3.632 10 O -0.415 6.415 11 N -0.357 5.357 12 C 0.010 3.990 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.546 4.546 17 H 0.076 0.924 18 C -0.134 4.134 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.245 0.755 30 H 0.232 0.768 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.513 0.727 15.316 16.294 hybrid contribution 0.106 0.157 -1.746 1.756 sum -5.408 0.884 13.570 14.635 Atomic orbital electron populations 1.22758 0.80176 1.03046 1.00227 1.87913 1.20224 1.26365 1.95511 1.20556 0.84242 0.86123 1.02464 1.24342 0.97383 1.01521 0.86888 1.73640 0.89599 1.17938 1.23626 1.84565 1.21566 1.66499 1.23368 1.26468 1.00554 0.98757 0.83642 1.22556 0.92566 1.12321 0.96195 1.16857 0.85909 0.77638 0.82818 1.90758 1.18459 1.50378 1.81864 1.46167 1.09113 1.72594 1.07823 1.21811 0.99921 1.00867 0.76370 1.18371 0.89405 0.92872 0.93841 1.21841 1.02805 0.97660 0.96581 1.21843 1.02865 0.97631 0.96566 1.20926 0.93371 1.50795 0.89524 0.92429 1.24868 0.94936 0.94691 0.98912 1.69780 0.99328 1.50043 1.33275 0.86624 0.77731 0.78701 0.84764 1.20262 1.21311 1.20256 0.89367 0.94073 0.93353 0.91564 0.89207 0.75454 0.76833 0.92322 0.92334 0.97605 0.89485 0.95341 0.95318 0.89494 0.97600 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.53 10.69 -35.23 -0.38 -5.91 16 3 C 0.14 1.93 6.20 36.01 0.22 2.15 16 4 C 0.06 0.90 7.21 -79.77 -0.58 0.32 16 5 N -0.34 -4.80 12.01 34.78 0.42 -4.38 16 6 O 0.10 1.23 11.06 18.64 0.21 1.44 16 7 C -0.01 -0.13 11.85 30.41 0.36 0.23 16 8 C -0.23 -3.30 6.47 -102.89 -0.67 -3.96 16 9 C 0.58 10.06 7.81 -12.53 -0.10 9.96 16 10 O -0.54 -10.92 15.70 5.27 0.08 -10.83 16 11 N -0.71 -11.88 4.95 -61.39 -0.30 -12.18 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 C 0.06 1.23 0.50 -155.66 -0.08 1.16 16 14 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 15 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 16 C -0.51 -12.87 8.01 -34.44 -0.28 -13.15 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.89 -22.91 9.35 55.43 0.52 -22.39 16 20 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.25 7.11 -51.93 -0.37 0.88 16 29 H 0.23 1.45 7.68 -52.49 -0.40 1.04 16 30 H 0.40 5.72 5.35 -40.82 -0.22 5.50 16 31 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 34 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 38 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -29.85 326.68 -4.32 -34.17 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.26 Total: 2.48 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 0.49 Total: -2.55 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.63 Total: -38.96 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.09 Total: -15.30 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.85 -4.32 -34.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425614471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.266 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds