Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47037 * 59.99882 * 20 18 16 22 22 H 1.48501 * 109.46667 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47133 * 299.99829 * 20 18 16 24 24 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 26 26 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 27 27 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 28 28 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 29 29 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 34 34 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 36 36 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 37 37 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 38 38 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 39 39 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 6 6.8417 2.1632 -5.4934 15 6 6.6418 -0.3273 -5.4807 16 6 5.5533 1.0049 -7.2671 17 1 4.5177 1.0865 -7.5625 18 6 6.5395 0.9215 -8.2269 19 7 7.8006 0.8217 -7.8672 20 14 6.0844 0.9489 -10.0385 21 1 5.3836 2.2195 -10.3536 22 1 7.3171 0.8459 -10.8601 23 1 5.1908 -0.1977 -10.3418 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 6.5911 0.9310 -1.1214 30 1 5.9373 0.9934 -3.2730 31 1 3.9939 0.2471 -5.1816 32 1 4.1364 2.0214 -5.1906 33 1 7.1072 2.1472 -4.4364 34 1 7.7467 2.0872 -6.0962 35 1 6.3277 3.0961 -5.7248 36 1 5.9854 -1.1686 -5.7032 37 1 7.5468 -0.4028 -6.0835 38 1 6.9073 -0.3432 -4.4237 39 1 8.4944 0.7634 -8.5425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425614471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -44.080932 kcal Electronic energy + Delta-G solvation = -22307.906475 eV Core-core repulsion = 18832.494678 eV Total energy + Delta-G solvation = -3475.411797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.06684 -40.70518 -38.98442 -38.08781 -35.16414 -35.03174 -33.40966 -32.38124 -29.42309 -27.67398 -27.51976 -27.15159 -26.67072 -25.06782 -22.42984 -21.70398 -20.62469 -19.45016 -18.90681 -18.12372 -17.61816 -17.35338 -16.94403 -16.64519 -16.59818 -16.21616 -16.09029 -15.23304 -14.87495 -14.52491 -14.51674 -13.99298 -13.58580 -13.38440 -13.17647 -13.06215 -12.66489 -12.63066 -12.56258 -12.53319 -12.22039 -12.11755 -11.45721 -11.38736 -11.29124 -11.09780 -10.85538 -10.75918 -10.67990 -10.37135 -9.98637 -8.00369 -6.15427 0.04973 0.49049 1.45573 1.47505 1.53211 1.86882 2.11586 2.27509 2.49235 2.67045 3.03938 3.23757 3.37086 3.75286 3.94187 4.12246 4.25802 4.44465 4.45899 4.50986 4.53251 4.60089 4.67273 4.75693 4.79116 5.01745 5.09176 5.13565 5.23429 5.33790 5.56827 5.70263 5.71396 6.01798 6.19964 6.24304 6.46132 6.56424 6.88223 7.07153 7.18696 7.52201 8.98111 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.003810 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.281564 B = 7347.829680 C = 8130.910375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.142 3.858 4 C 0.045 3.955 5 N -0.354 5.354 6 O 0.114 5.886 7 C 0.033 3.967 8 C -0.265 4.265 9 C 0.587 3.413 10 O -0.575 6.575 11 N -0.697 5.697 12 C 0.149 3.851 13 C 0.051 3.949 14 C -0.122 4.122 15 C -0.123 4.123 16 C -0.530 4.530 17 H 0.044 0.956 18 C 0.031 3.969 19 N -0.897 5.897 20 Si 0.941 3.059 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.279 1.279 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.278 0.722 30 H 0.411 0.589 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 0.798 15.781 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.065 3.935 4 C -0.117 4.117 5 N -0.059 5.059 6 O 0.051 5.949 7 C -0.049 4.049 8 C -0.273 4.273 9 C 0.374 3.626 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.025 3.975 13 C 0.051 3.949 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.568 4.568 17 H 0.062 0.938 18 C -0.169 4.169 19 N -0.536 5.536 20 Si 0.768 3.232 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.204 1.204 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.293 0.707 30 H 0.249 0.751 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.486 0.695 16.756 17.360 hybrid contribution -0.205 0.158 -2.142 2.158 sum -4.691 0.853 14.614 15.372 Atomic orbital electron populations 1.22968 0.78368 1.04225 1.01198 1.87860 1.22353 1.27038 1.95692 1.20590 0.84123 0.85967 1.02821 1.24599 0.98074 1.01823 0.87230 1.73645 0.90130 1.18531 1.23628 1.84563 1.20752 1.65700 1.23925 1.27248 1.00806 0.94119 0.82735 1.22248 0.94364 1.16199 0.94480 1.17134 0.85204 0.76331 0.83904 1.90740 1.20126 1.52031 1.82709 1.45876 1.09906 1.72743 1.06305 1.21351 0.98559 0.99373 0.78171 1.18369 0.90322 0.93702 0.92545 1.21686 1.01162 0.96631 0.98509 1.21693 1.01242 0.96638 0.98459 1.21245 0.92843 1.50958 0.91796 0.93790 1.25391 0.95073 0.94745 1.01691 1.69881 0.99580 1.50249 1.33844 0.85882 0.77422 0.78361 0.81517 1.20326 1.20904 1.20425 0.88153 0.91863 0.93592 0.89486 0.90483 0.70711 0.75133 0.94101 0.93810 0.93850 0.91869 0.96334 0.96484 0.91845 0.93903 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.41 -11.77 10.69 -148.98 -1.59 -13.36 16 3 C 0.14 3.78 6.20 71.24 0.44 4.22 16 4 C 0.05 1.26 7.21 45.16 0.33 1.59 16 5 N -0.35 -9.17 12.01 -44.78 -0.54 -9.71 16 6 O 0.11 2.33 11.06 76.93 0.85 3.18 16 7 C 0.03 0.56 11.85 67.61 0.80 1.36 16 8 C -0.27 -7.08 6.47 -18.74 -0.12 -7.20 16 9 C 0.59 19.61 7.81 86.66 0.68 20.28 16 10 O -0.58 -23.66 15.70 -4.04 -0.06 -23.72 16 11 N -0.70 -22.06 4.95 -466.39 -2.31 -24.37 16 12 C 0.15 5.97 4.50 86.38 0.39 6.36 16 13 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 14 C -0.12 -5.02 8.08 71.98 0.58 -4.43 16 15 C -0.12 -5.08 8.08 71.98 0.58 -4.50 16 16 C -0.53 -27.06 8.01 25.60 0.21 -26.85 16 17 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 18 C 0.03 1.59 5.15 84.65 0.44 2.02 16 19 N -0.90 -46.18 9.35 21.45 0.20 -45.98 16 20 Si 0.94 41.60 29.54 68.60 2.03 43.63 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 2.20 7.11 -2.39 -0.02 2.18 16 29 H 0.28 1.76 7.68 -2.91 -0.02 1.74 16 30 H 0.41 10.29 5.35 -92.71 -0.50 9.79 16 31 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 34 H 0.06 2.93 6.07 -2.38 -0.01 2.92 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 2.96 6.07 -2.38 -0.01 2.95 16 38 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 39 H 0.26 13.00 8.31 -92.71 -0.77 12.22 16 Total: -1.00 -65.66 326.68 4.69 -60.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.58 Total: 12.51 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.54 Total: -3.15 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.65 Total: -80.06 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.80 Total: -33.90 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.66 4.69 -60.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425614471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.887 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds