Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33488 * 126.83155 * 2 1 4 4 N 1.20652 * 113.15984 * 180.31124 * 3 2 1 5 5 C 1.30013 * 112.29984 * 359.71257 * 4 3 2 6 6 C 1.50701 * 127.33588 * 179.97438 * 5 4 3 7 7 O 1.42908 * 109.46760 * 270.04602 * 6 5 4 8 8 C 1.37356 * 126.82700 * 179.82984 * 2 1 3 9 9 C 1.47394 * 128.56851 * 359.97438 * 8 2 1 10 10 O 1.21610 * 120.00204 * 269.68231 * 9 8 2 11 11 N 1.34784 * 120.00019 * 89.67727 * 9 8 2 12 12 C 1.46493 * 119.99864 * 179.72895 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46836 * 299.99612 * 13 12 11 15 15 C 1.53000 * 109.47371 * 59.99504 * 13 12 11 16 16 C 1.50702 * 109.47325 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99792 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00025 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00107 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00009 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47127 * 59.99950 * 20 18 16 22 22 H 1.48507 * 109.47265 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47080 * 300.00056 * 20 18 16 24 24 H 1.08999 * 109.46867 * 270.16844 * 1 2 3 25 25 H 1.08995 * 109.46947 * 30.17109 * 1 2 3 26 26 H 1.09003 * 109.47106 * 150.16730 * 1 2 3 27 27 H 1.09000 * 109.47331 * 30.04115 * 6 5 4 28 28 H 1.08998 * 109.47512 * 150.04904 * 6 5 4 29 29 H 0.96702 * 113.99830 * 179.97438 * 7 6 5 30 30 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 31 31 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 32 32 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 33 33 H 1.09003 * 109.47126 * 60.00153 * 14 13 12 34 34 H 1.08996 * 109.47277 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.47339 * 300.00075 * 14 13 12 36 36 H 1.08998 * 109.46763 * 60.00533 * 15 13 12 37 37 H 1.08996 * 109.47041 * 180.02562 * 15 13 12 38 38 H 1.08994 * 109.47083 * 300.00462 * 15 13 12 39 39 H 0.97000 * 120.00440 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3073 1.0684 0.0000 4 7 3.4796 0.7833 -0.0060 5 6 3.6747 -0.5021 -0.0050 6 6 4.9964 -1.2260 -0.0117 7 8 5.4066 -1.4561 -1.3612 8 6 2.3304 -1.0995 0.0033 9 6 1.9587 -2.5258 0.0080 10 8 1.8114 -3.1123 1.0631 11 7 1.7820 -3.1800 -1.1571 12 6 1.4184 -4.5991 -1.1523 13 6 1.2808 -5.0951 -2.5932 14 6 0.1917 -4.2920 -3.3071 15 6 2.6119 -4.9120 -3.3250 16 6 0.9062 -6.5548 -2.5884 17 1 0.7794 -7.0767 -1.6513 18 6 0.7253 -7.2241 -3.7801 19 7 0.8792 -6.5885 -4.9212 20 14 0.2617 -9.0336 -3.7742 21 1 -1.0300 -9.2113 -3.0634 22 1 0.1280 -9.5150 -5.1727 23 1 1.3190 -9.8132 -3.0818 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5112 27 1 5.7455 -0.6194 0.4973 28 1 4.8905 -2.1806 0.5036 29 1 6.2519 -1.9189 -1.4418 30 1 1.8998 -2.7122 -1.9986 31 1 2.1946 -5.1714 -0.6441 32 1 0.4703 -4.7297 -0.6306 33 1 0.4621 -3.2361 -3.3106 34 1 0.0932 -4.6456 -4.3334 35 1 -0.7567 -4.4225 -2.7857 36 1 3.3878 -5.4842 -2.8164 37 1 2.5137 -5.2650 -4.3515 38 1 2.8824 -3.8562 -3.3284 39 1 0.7524 -7.0593 -5.7597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577507369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = -33.481167 kcal Electronic energy + Delta-G solvation = -22744.879834 eV Core-core repulsion = 19269.927677 eV Total energy + Delta-G solvation = -3474.952157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.96412 -39.27242 -37.15540 -36.39875 -33.97145 -33.50022 -33.23459 -30.86681 -28.19082 -27.53444 -25.90590 -25.74362 -25.20574 -23.57595 -20.76032 -19.93937 -18.86789 -18.13621 -17.84770 -17.34036 -16.49675 -15.82722 -15.27552 -15.08164 -14.78837 -14.50166 -14.42849 -13.52825 -13.45377 -13.40721 -12.95106 -12.77127 -12.69139 -12.22644 -12.12266 -11.48151 -11.32978 -11.21682 -10.86829 -10.76147 -10.41044 -10.35429 -10.30186 -10.21969 -9.88901 -9.66231 -9.42407 -9.31959 -8.82534 -8.53794 -8.36803 -6.03889 -4.14562 1.25566 1.72200 2.63966 2.81589 3.28502 3.33232 3.36141 3.56972 3.85602 4.13760 4.38277 4.59094 4.86791 4.94995 4.99769 5.17468 5.22747 5.24353 5.31004 5.50871 5.63936 5.78974 6.16899 6.25832 6.47480 6.69087 6.82188 6.88537 6.94873 6.98958 7.32169 7.38786 7.53500 7.66957 7.92800 7.98496 8.09608 8.11455 8.34777 8.52209 8.85657 9.51390 10.97413 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.004348 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.052618 B = 6437.737338 C = 6838.118393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.011 3.989 3 O 0.102 5.898 4 N -0.340 5.340 5 C 0.049 3.951 6 C 0.157 3.843 7 O -0.561 6.561 8 C -0.229 4.229 9 C 0.587 3.413 10 O -0.539 6.539 11 N -0.698 5.698 12 C 0.131 3.869 13 C 0.057 3.943 14 C -0.132 4.132 15 C -0.131 4.131 16 C -0.507 4.507 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.389 0.611 30 H 0.402 0.598 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.006 0.994 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.008 0.992 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 12.208 6.471 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 O 0.036 5.964 4 N -0.045 5.045 5 C -0.113 4.113 6 C 0.078 3.922 7 O -0.366 6.366 8 C -0.236 4.236 9 C 0.370 3.630 10 O -0.417 6.417 11 N -0.348 5.348 12 C 0.009 3.991 13 C 0.056 3.944 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.546 4.546 17 H 0.075 0.925 18 C -0.134 4.134 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.238 0.762 30 H 0.238 0.762 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.025 0.975 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.396 13.063 6.861 15.141 hybrid contribution 0.116 -1.758 -0.276 1.783 sum 3.512 11.305 6.585 13.546 Atomic orbital electron populations 1.20476 0.82923 1.05306 1.04776 1.24621 0.96058 0.84914 0.99630 1.84511 1.11051 1.33135 1.67673 1.73569 0.96081 1.16570 1.18294 1.24293 0.95354 0.88944 1.02744 1.20125 0.89090 0.98045 0.84938 1.86527 1.43853 1.81445 1.24804 1.22115 0.92461 0.95940 1.13120 1.16894 0.77811 0.83599 0.84738 1.90798 1.51835 1.67849 1.31230 1.46320 1.67767 1.13190 1.07513 1.21830 0.99182 0.77119 1.01004 1.18358 0.93114 0.95269 0.87657 1.21841 0.97823 0.94906 1.04361 1.21826 0.96864 0.95988 1.04202 1.20924 1.47378 0.93644 0.92650 0.92474 1.24872 0.94970 0.98087 0.95497 1.69794 1.49387 1.35936 0.97228 0.86630 0.79096 0.85182 0.76923 1.20273 1.21325 1.20294 0.88674 0.89092 0.88487 0.91299 0.90685 0.76235 0.76211 0.92460 0.92341 0.97528 0.89508 0.95376 0.95450 0.89597 0.97307 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.33 36.01 0.37 -0.33 16 2 C 0.01 0.14 7.55 -34.63 -0.26 -0.12 16 3 O 0.10 1.37 11.06 18.66 0.21 1.57 16 4 N -0.34 -5.05 12.01 34.78 0.42 -4.64 16 5 C 0.05 0.73 7.22 -79.77 -0.58 0.16 16 6 C 0.16 1.94 7.65 36.01 0.28 2.21 16 7 O -0.56 -7.07 13.64 -35.23 -0.48 -7.55 16 8 C -0.23 -3.54 6.24 -102.90 -0.64 -4.18 16 9 C 0.59 10.46 7.60 -12.53 -0.10 10.37 16 10 O -0.54 -11.26 17.11 5.27 0.09 -11.17 16 11 N -0.70 -12.53 4.95 -61.39 -0.30 -12.83 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 15 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 16 C -0.51 -12.99 8.01 -34.44 -0.28 -13.27 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.27 9.35 55.43 0.52 -22.75 16 20 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.95 8.11 -51.93 -0.42 0.52 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.39 2.88 9.12 45.56 0.42 3.29 16 30 H 0.40 6.92 6.15 -40.82 -0.25 6.66 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.01 0.11 6.87 -51.93 -0.36 -0.24 16 34 H 0.09 2.13 6.07 -51.93 -0.31 1.81 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 38 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -30.69 330.33 -4.91 -35.60 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.52 Total: 6.31 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.79 Total: -4.88 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.63 Total: -40.22 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.18 Total: -17.14 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.69 -4.91 -35.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577507369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.115 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds