Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42895 * 113.99595 * 2 1 4 4 C 1.52996 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47191 * 64.49017 * 4 3 2 6 6 C 1.46506 * 120.00034 * 264.46875 * 5 4 3 7 7 C 1.50698 * 109.46829 * 270.00131 * 6 5 4 8 8 H 1.07993 * 120.00542 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99759 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00183 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99675 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47046 * 90.00617 * 11 9 7 13 13 H 1.48499 * 109.46805 * 209.99854 * 11 9 7 14 14 H 1.48498 * 109.47448 * 330.00081 * 11 9 7 15 15 C 1.34778 * 120.00047 * 84.46675 * 5 4 3 16 16 O 1.21601 * 119.99931 * 4.75496 * 15 5 4 17 17 C 1.47395 * 119.99904 * 184.75149 * 15 5 4 18 18 C 1.47103 * 128.56870 * 84.65447 * 17 15 5 19 19 C 1.50707 * 127.33208 * 0.04861 * 18 17 15 20 20 N 1.30010 * 105.33373 * 180.02562 * 18 17 15 21 21 O 1.20658 * 112.30089 * 0.02562 * 20 18 17 22 22 C 1.33493 * 113.15462 * 359.97438 * 21 20 18 23 23 C 1.50701 * 126.82684 * 180.02562 * 22 21 20 24 24 H 1.08992 * 109.47087 * 300.00140 * 1 2 3 25 25 H 1.09000 * 109.46921 * 60.00369 * 1 2 3 26 26 H 1.09003 * 109.46388 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47628 * 59.99739 * 3 2 1 28 28 H 1.09005 * 109.47253 * 299.99744 * 3 2 1 29 29 H 1.09002 * 109.47336 * 304.49062 * 4 3 2 30 30 H 1.09001 * 109.47266 * 184.48964 * 4 3 2 31 31 H 1.09001 * 109.46774 * 29.99466 * 6 5 4 32 32 H 1.08995 * 109.47410 * 149.99910 * 6 5 4 33 33 H 0.96998 * 120.00147 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47539 * 269.98830 * 19 18 17 35 35 H 1.09005 * 109.46776 * 29.98868 * 19 18 17 36 36 H 1.09002 * 109.46655 * 149.98216 * 19 18 17 37 37 H 1.09010 * 109.47203 * 355.36098 * 23 22 21 38 38 H 1.08998 * 109.47515 * 115.35928 * 23 22 21 39 39 H 1.08996 * 109.47098 * 235.36530 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9758 0.5530 -1.2456 6 6 4.2222 -0.8906 -1.2879 7 6 5.6614 -1.1650 -0.9354 8 1 6.3262 -0.3462 -0.7035 9 6 6.1295 -2.4617 -0.9089 10 7 7.3856 -2.7012 -0.6018 11 14 4.9794 -3.8781 -1.3093 12 1 5.0242 -4.1551 -2.7676 13 1 5.4062 -5.0886 -0.5624 14 1 3.5937 -3.5170 -0.9163 15 6 4.1543 1.2998 -2.3533 16 8 4.0340 2.5086 -2.2975 17 6 4.4954 0.6513 -3.6322 18 6 3.5917 0.0525 -4.6266 19 6 2.0885 -0.0333 -4.5609 20 7 4.3658 -0.3864 -5.5744 21 8 5.5318 -0.1737 -5.3486 22 6 5.7356 0.4561 -4.1894 23 6 7.0626 0.8707 -3.6077 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5761 0.8479 30 1 3.9784 2.1774 0.0811 31 1 3.5708 -1.3914 -0.5716 32 1 4.0159 -1.2652 -2.2905 33 1 7.7150 -3.6134 -0.5835 34 1 1.7987 -0.9600 -4.0657 35 1 1.7004 0.8160 -3.9984 36 1 1.6793 -0.0176 -5.5710 37 1 7.8685 0.5047 -4.2440 38 1 7.1104 1.9582 -3.5504 39 1 7.1689 0.4491 -2.6083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585698482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -21.545929 kcal Electronic energy + Delta-G solvation = -23660.051709 eV Core-core repulsion = 20185.617103 eV Total energy + Delta-G solvation = -3474.434606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.33130 -39.26554 -37.52210 -35.06456 -34.12693 -33.04712 -32.55463 -30.16992 -28.45889 -27.84206 -27.28568 -26.10835 -24.20813 -22.53396 -22.04763 -19.88568 -18.70907 -17.35235 -17.06193 -16.94348 -16.31652 -15.99300 -15.55883 -15.30388 -14.77305 -14.20834 -14.01872 -13.72928 -13.19049 -12.99024 -12.90735 -12.73237 -12.54005 -12.32533 -12.21510 -11.98101 -11.90585 -11.75286 -11.67743 -11.05660 -10.87497 -10.65318 -10.59964 -10.25619 -9.70945 -9.58589 -9.46410 -9.36916 -8.77632 -8.64764 -7.84848 -6.21581 -4.21880 1.90708 2.38378 3.00220 3.21424 3.29030 3.32491 3.38300 3.83077 4.00006 4.30117 4.50599 4.72402 5.11180 5.19074 5.24693 5.36294 5.46656 5.51123 5.52876 5.58542 5.62048 5.65822 5.69544 5.82287 5.86435 5.91258 6.00826 6.17516 6.22869 6.34702 6.49101 6.56269 6.81243 7.26238 7.32762 7.47529 8.02803 8.37762 8.69589 8.71803 8.82313 9.39365 10.90417 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.009692 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.891709 B = 2888.269380 C = 3997.978684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.122 3.878 5 N -0.570 5.570 6 C 0.214 3.786 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.081 3.919 10 N -0.890 5.890 11 Si 0.863 3.137 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.261 1.261 15 C 0.603 3.397 16 O -0.561 6.561 17 C -0.234 4.234 18 C 0.047 3.953 19 C -0.071 4.071 20 N -0.366 5.366 21 O 0.087 5.913 22 C 0.038 3.962 23 C -0.081 4.081 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 5.696 -1.986 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.299 5.299 6 C 0.093 3.907 7 C -0.577 4.577 8 H 0.097 0.903 9 C -0.123 4.123 10 N -0.528 5.528 11 Si 0.689 3.311 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.185 1.185 15 C 0.389 3.611 16 O -0.442 6.442 17 C -0.241 4.241 18 C -0.116 4.116 19 C -0.129 4.129 20 N -0.074 5.074 21 O 0.027 5.973 22 C -0.025 4.025 23 C -0.138 4.138 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.363 5.348 -3.049 11.205 hybrid contribution -0.781 -0.503 0.543 1.076 sum -10.144 4.845 -2.506 11.518 Atomic orbital electron populations 1.22693 0.81977 1.02369 0.99432 1.88012 1.18836 1.27716 1.95276 1.23055 0.95126 0.84829 1.00155 1.21420 0.91011 0.99887 0.87818 1.47786 1.63350 1.10459 1.08262 1.19828 0.97767 0.75523 0.97618 1.21335 0.93815 0.94106 1.48424 0.90275 1.24776 0.94840 0.98406 0.94241 1.69867 1.14191 1.20862 1.47845 0.87030 0.82270 0.82669 0.79116 1.20016 1.20863 1.18504 1.16870 0.76371 0.85467 0.82344 1.90708 1.53683 1.13795 1.86006 1.21646 0.92784 1.10489 0.99149 1.24580 0.98206 0.98274 0.90494 1.20126 0.85973 1.03558 1.03222 1.73492 0.89472 1.21038 1.23446 1.84450 1.21185 1.57547 1.34151 1.24497 0.97587 0.94323 0.86079 1.20560 0.88345 1.01867 1.03033 0.94487 0.94508 0.89954 0.92761 0.93186 0.88775 0.89074 0.93739 0.95739 0.92404 0.89925 0.90343 0.90466 0.89996 0.89548 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.08 10.13 -35.23 -0.36 -6.43 16 3 C 0.05 0.68 6.24 37.16 0.23 0.92 16 4 C 0.12 2.10 5.78 -4.04 -0.02 2.08 16 5 N -0.57 -11.60 2.41 -176.34 -0.42 -12.02 16 6 C 0.21 4.85 4.00 -5.19 -0.02 4.83 16 7 C -0.54 -13.86 9.52 -34.44 -0.33 -14.18 16 8 H 0.08 2.20 7.52 -52.49 -0.39 1.80 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 11 Si 0.86 20.51 27.47 -169.99 -4.67 15.85 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 15 C 0.60 12.53 7.44 -12.53 -0.09 12.44 16 16 O -0.56 -12.33 16.75 5.28 0.09 -12.24 16 17 C -0.23 -4.73 4.45 -102.89 -0.46 -5.19 16 18 C 0.05 0.88 7.26 -79.76 -0.58 0.30 16 19 C -0.07 -1.06 10.49 36.01 0.38 -0.68 16 20 N -0.37 -7.14 12.01 34.78 0.42 -6.72 16 21 O 0.09 1.68 11.06 18.65 0.21 1.89 16 22 C 0.04 0.73 7.55 -34.63 -0.26 0.47 16 23 C -0.08 -1.34 10.33 36.01 0.37 -0.97 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.63 8.03 -51.93 -0.42 1.21 16 30 H 0.09 1.50 7.53 -51.93 -0.39 1.11 16 31 H 0.04 1.03 6.69 -51.93 -0.35 0.69 16 32 H 0.02 0.58 5.96 -51.93 -0.31 0.27 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.12 2.24 7.16 -51.93 -0.37 1.87 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -31.08 336.70 -4.28 -35.36 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.63 Total: 0.19 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 0.23 Total: 3.58 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.77 Total: -43.26 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.06 Total: -16.79 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.08 -4.28 -35.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585698482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.813 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds