Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36178 * 120.11945 * 2 1 4 4 C 1.39190 * 121.06280 * 179.97438 * 3 2 1 5 5 C 1.36663 * 120.91965 * 359.97438 * 4 3 2 6 6 O 1.35807 * 120.22743 * 179.97438 * 5 4 3 7 7 C 1.42904 * 117.00119 * 5.50443 * 6 5 4 8 8 C 1.52997 * 109.47262 * 180.02562 * 7 6 5 9 9 C 1.50703 * 115.54851 * 272.26517 * 8 7 6 10 10 H 1.07997 * 119.99673 * 114.88973 * 9 8 7 11 11 C 1.37880 * 120.00046 * 294.88554 * 9 8 7 12 12 N 1.31514 * 119.99892 * 355.70232 * 11 9 8 13 13 Si 1.86797 * 119.99982 * 175.70133 * 11 9 8 14 14 H 1.48500 * 109.47000 * 59.99984 * 13 11 9 15 15 H 1.48497 * 109.47306 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46973 * 300.00040 * 13 11 9 17 17 C 1.52994 * 117.49938 * 126.55791 * 8 7 6 18 18 C 1.52996 * 117.49888 * 57.93308 * 8 7 6 19 19 C 1.40959 * 119.54476 * 0.26099 * 5 4 3 20 20 C 1.40419 * 121.28859 * 179.72154 * 19 5 4 21 21 C 1.36133 * 119.66091 * 179.97438 * 20 19 5 22 22 C 1.39364 * 120.97532 * 359.97438 * 21 20 19 23 23 C 1.36104 * 120.98081 * 359.50283 * 22 21 20 24 24 C 1.40519 * 120.11352 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46754 * 89.99953 * 1 2 3 26 26 H 1.08995 * 109.47278 * 210.00157 * 1 2 3 27 27 H 1.09000 * 109.46565 * 330.00909 * 1 2 3 28 28 H 1.08000 * 119.46597 * 359.97236 * 3 2 1 29 29 H 1.08000 * 119.53750 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.46775 * 60.01622 * 7 6 5 31 31 H 1.09004 * 109.46656 * 300.02048 * 7 6 5 32 32 H 0.96994 * 119.99838 * 185.02593 * 12 11 9 33 33 H 1.09003 * 117.49900 * 359.97438 * 17 8 7 34 34 H 1.09005 * 117.50269 * 145.02267 * 17 8 7 35 35 H 1.09000 * 117.50186 * 214.97535 * 18 8 7 36 36 H 1.09004 * 117.50097 * 359.97438 * 18 8 7 37 37 H 1.07997 * 120.16816 * 0.02562 * 20 19 5 38 38 H 1.07998 * 119.51077 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.50372 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.17285 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1779 0.0000 4 6 3.5821 1.2008 0.0005 5 6 4.3035 0.0401 0.0016 6 8 5.6610 0.0789 0.0016 7 6 6.2734 1.3644 0.1226 8 6 7.7952 1.2083 0.1029 9 6 8.4404 0.9595 1.4418 10 1 8.9378 0.0206 1.6354 11 6 8.3959 1.9305 2.4197 12 7 7.8651 3.1047 2.1567 13 14 9.0893 1.5782 4.1181 14 1 10.5329 1.2491 4.0048 15 1 8.9202 2.7756 4.9799 16 1 8.3654 0.4296 4.7198 17 6 8.5776 2.0404 -0.9151 18 6 8.4202 0.5322 -1.1190 19 6 3.6289 -1.1975 -0.0034 20 6 4.3336 -2.4121 -0.0084 21 6 3.6484 -3.5885 -0.0126 22 6 2.2549 -3.6069 -0.0116 23 6 1.5389 -2.4494 0.0038 24 6 2.2120 -1.2155 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8901 0.5137 28 1 1.6436 2.1093 -0.0005 29 1 4.0990 2.1491 0.0001 30 1 5.9674 1.8256 1.0616 31 1 5.9620 1.9949 -0.7103 32 1 7.8989 3.8117 2.8199 33 1 8.0081 2.6987 -1.5711 34 1 9.5593 2.4082 -0.6165 35 1 9.2984 -0.0922 -0.9546 36 1 7.7472 0.1982 -1.9088 37 1 5.4135 -2.4130 -0.0079 38 1 4.1928 -4.5212 -0.0168 39 1 1.7354 -4.5538 -0.0146 40 1 0.4594 -2.4789 0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596294479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = 8.419032 kcal Electronic energy + Delta-G solvation = -21477.345380 eV Core-core repulsion = 18415.059415 eV Total energy + Delta-G solvation = -3062.285964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71733 -39.80486 -37.92456 -37.12690 -34.15389 -33.74571 -31.37795 -30.80356 -28.70341 -27.48466 -26.77128 -24.15617 -23.97468 -23.04073 -21.66495 -21.03134 -18.92887 -18.62675 -17.96925 -17.61670 -16.91206 -16.39076 -15.93730 -15.91065 -15.34474 -15.04092 -14.92121 -14.66351 -14.53684 -14.12485 -13.69244 -13.50558 -13.27228 -12.92669 -12.89807 -12.86977 -12.74412 -12.50162 -12.35730 -12.13701 -11.78697 -11.70821 -11.55711 -11.45427 -10.86862 -10.58459 -10.29844 -10.16568 -9.60327 -8.36465 -8.18633 -6.29550 -0.30399 0.04307 1.13734 1.37794 1.40341 1.47088 2.08858 2.27748 2.37679 3.06505 3.16117 3.51846 3.75352 3.86167 3.94208 4.10194 4.13203 4.21913 4.29352 4.38014 4.45274 4.48164 4.55092 4.64291 4.70015 4.71938 4.82673 4.90729 4.91966 5.03545 5.12262 5.17620 5.22659 5.26319 5.33855 5.45278 5.51262 5.51821 5.64728 5.71272 5.72424 5.87771 6.10735 6.30552 6.58610 6.73184 7.37394 8.89393 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.004730 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.762751 B = 5918.811081 C = 6070.784042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.124 4.124 3 C -0.085 4.085 4 C -0.239 4.239 5 C 0.119 3.881 6 O -0.318 6.318 7 C 0.125 3.875 8 C 0.010 3.990 9 C -0.510 4.510 10 H 0.052 0.948 11 C 0.027 3.973 12 N -0.908 5.908 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.277 1.277 17 C -0.160 4.160 18 C -0.176 4.176 19 C -0.095 4.095 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.035 4.035 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 -8.942 -4.992 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.258 4.258 5 C 0.073 3.927 6 O -0.232 6.232 7 C 0.051 3.949 8 C 0.010 3.990 9 C -0.547 4.547 10 H 0.070 0.930 11 C -0.174 4.174 12 N -0.545 5.545 13 Si 0.776 3.224 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.198 4.198 18 C -0.213 4.213 19 C -0.095 4.095 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.122 4.122 23 C -0.136 4.136 24 C -0.035 4.035 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.162 0.838 29 H 0.134 0.866 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.163 0.837 39 H 0.178 0.822 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.194 -8.923 -4.898 18.288 hybrid contribution 1.130 0.791 0.951 1.676 sum -14.063 -8.132 -3.947 16.718 Atomic orbital electron populations 1.20772 0.87886 1.03908 1.03304 1.19981 0.97943 0.91211 1.03304 1.20686 0.92129 0.99174 0.98319 1.21026 0.96423 0.97049 1.11333 1.19233 0.83247 0.94522 0.95738 1.86021 1.16353 1.34163 1.86633 1.22219 0.93162 0.80774 0.98785 1.18876 0.88311 1.01510 0.90316 1.20694 1.35655 1.01399 0.96972 0.93027 1.25659 0.95108 0.94917 1.01683 1.70018 1.44843 1.03298 1.36344 0.85730 0.79186 0.77621 0.79902 1.19231 1.20491 1.20240 1.22723 1.01441 0.92677 1.02960 1.22793 1.02760 0.94943 1.00829 1.17817 0.93694 0.91541 1.06479 1.21075 1.00043 0.92293 0.99197 1.21155 0.95411 0.97732 1.00298 1.21301 0.93536 0.99679 0.97651 1.21368 1.01323 0.90314 1.00598 1.18087 0.90424 0.95526 0.99437 0.89999 0.90005 0.90556 0.83816 0.86589 0.93392 0.94296 0.92705 0.90264 0.90734 0.89846 0.89669 0.86818 0.83655 0.82194 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.54 71.24 0.68 -1.05 16 2 C -0.12 -3.34 5.89 -19.79 -0.12 -3.46 16 3 C -0.09 -2.59 9.58 22.02 0.21 -2.38 16 4 C -0.24 -9.13 9.00 22.13 0.20 -8.93 16 5 C 0.12 4.98 6.66 22.57 0.15 5.13 16 6 O -0.32 -15.05 9.24 -91.38 -0.84 -15.90 16 7 C 0.13 6.18 4.57 71.98 0.33 6.51 16 8 C 0.01 0.53 1.59 -52.93 -0.08 0.45 16 9 C -0.51 -28.69 8.82 25.60 0.23 -28.46 16 10 H 0.05 2.92 7.82 -2.91 -0.02 2.90 16 11 C 0.03 1.49 5.25 84.66 0.44 1.94 16 12 N -0.91 -51.71 12.45 21.45 0.27 -51.45 16 13 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 C -0.16 -7.44 9.88 30.59 0.30 -7.14 16 18 C -0.18 -7.82 9.82 30.59 0.30 -7.52 16 19 C -0.09 -3.49 5.75 -21.23 -0.12 -3.62 16 20 C -0.11 -3.65 9.56 22.31 0.21 -3.44 16 21 C -0.13 -3.22 9.95 22.05 0.22 -3.00 16 22 C -0.10 -2.12 9.95 22.04 0.22 -1.90 16 23 C -0.12 -2.61 9.28 22.34 0.21 -2.41 16 24 C -0.03 -1.03 5.74 -21.30 -0.12 -1.16 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.11 6.42 -2.39 -0.02 1.09 16 27 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 28 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.12 4.59 6.22 -2.91 -0.02 4.57 16 30 H 0.05 2.63 6.90 -2.39 -0.02 2.61 16 31 H 0.04 1.81 7.16 -2.38 -0.02 1.79 16 32 H 0.26 14.34 8.32 -92.71 -0.77 13.57 16 33 H 0.08 3.40 8.04 -2.39 -0.02 3.38 16 34 H 0.07 3.57 8.14 -2.38 -0.02 3.55 16 35 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 37 H 0.11 4.16 7.62 -2.91 -0.02 4.14 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.16 2.35 6.36 -2.91 -0.02 2.33 16 Total: -1.00 -65.29 333.06 5.74 -59.55 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.03 Total: 22.20 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 3.26 Total: -60.44 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.27 Total: -51.45 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.84 Total: -15.90 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.29 5.74 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596294479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.967 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds