Wall clock time and date at job start Tue Mar 31 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46931 * 2 1 4 4 N 1.30014 * 127.33847 * 269.68432 * 3 2 1 5 5 O 1.20658 * 112.30295 * 179.79645 * 4 3 2 6 6 C 1.33495 * 113.15678 * 0.49949 * 5 4 3 7 7 C 1.37361 * 106.33998 * 359.70734 * 6 5 4 8 8 C 1.47404 * 128.56605 * 180.02562 * 7 6 5 9 9 O 1.21599 * 120.00031 * 144.29056 * 8 7 6 10 10 N 1.34774 * 119.99328 * 324.28876 * 8 7 6 11 11 C 1.46496 * 120.00677 * 4.07992 * 10 8 7 12 12 C 1.50695 * 109.47506 * 94.57769 * 11 10 8 13 13 H 1.07998 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00039 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47392 * 90.00201 * 16 14 12 18 18 H 1.48501 * 109.47352 * 210.00094 * 16 14 12 19 19 H 1.48497 * 109.47248 * 329.99894 * 16 14 12 20 20 C 1.46502 * 119.99694 * 184.07006 * 10 8 7 21 21 C 1.53002 * 109.46930 * 90.00290 * 20 10 8 22 22 O 1.42899 * 109.46805 * 65.00179 * 21 20 10 23 23 C 1.42902 * 113.99750 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.47276 * 299.99464 * 1 2 3 25 25 H 1.08997 * 109.47598 * 59.99721 * 1 2 3 26 26 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47276 * 240.00536 * 2 1 3 28 28 H 1.08997 * 109.47598 * 120.00279 * 2 1 3 29 29 H 1.07998 * 126.83314 * 179.67195 * 6 5 4 30 30 H 1.09002 * 109.47475 * 214.58420 * 11 10 8 31 31 H 1.09000 * 109.46703 * 334.58218 * 11 10 8 32 32 H 0.97003 * 119.99827 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.47481 * 210.00179 * 20 10 8 34 34 H 1.09001 * 109.47141 * 330.00413 * 20 10 8 35 35 H 1.08997 * 109.47112 * 185.00270 * 21 20 10 36 36 H 1.08996 * 109.47272 * 305.00099 * 21 20 10 37 37 H 1.08999 * 109.47284 * 299.99622 * 23 22 21 38 38 H 1.09003 * 109.47341 * 60.00000 * 23 22 21 39 39 H 1.09008 * 109.46858 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3004 2.1624 -1.0337 5 8 2.6835 3.2630 -0.7207 6 6 2.7464 3.4408 0.6009 7 6 2.3297 2.2620 1.1697 8 6 2.2095 1.9235 2.5993 9 8 1.3043 1.2066 2.9804 10 7 3.1032 2.4086 3.4839 11 6 4.1402 3.3432 3.0400 12 6 3.6731 4.7576 3.2687 13 1 2.7011 4.9418 3.7018 14 6 4.4866 5.8164 2.9249 15 7 5.6701 5.5920 2.3970 16 14 3.9079 7.5696 3.2091 17 1 4.3217 8.0140 4.5643 18 1 4.5139 8.4624 2.1889 19 1 2.4280 7.6262 3.0999 20 6 3.0373 2.0013 4.8896 21 6 3.8936 0.7507 5.0989 22 8 5.2665 1.0683 4.8612 23 6 6.1563 -0.0370 5.0301 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.0626 4.3337 1.1197 30 1 5.0549 3.1667 3.6059 31 1 4.3350 3.1922 1.9782 32 1 6.2423 6.3369 2.1548 33 1 3.4122 2.8079 5.5196 34 1 2.0034 1.7825 5.1565 35 1 3.7747 0.3961 6.1227 36 1 3.5754 -0.0277 4.4055 37 1 6.0845 -0.4084 6.0523 38 1 5.8850 -0.8315 4.3349 39 1 7.1785 0.2860 4.8323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:21 Heat of formation + Delta-G solvation = -25.720987 kcal Electronic energy + Delta-G solvation = -23229.073152 eV Core-core repulsion = 19754.457502 eV Total energy + Delta-G solvation = -3474.615650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.27494 -39.14267 -37.40109 -35.15868 -34.72247 -32.82808 -31.81997 -30.75736 -29.56039 -27.25825 -26.08629 -24.53223 -23.77199 -22.97863 -21.95535 -20.24104 -18.98678 -17.14404 -16.95081 -16.55066 -16.40399 -16.01653 -15.63810 -15.10004 -14.73104 -14.53519 -14.18680 -14.01830 -13.67945 -13.14605 -12.73019 -12.43293 -12.37685 -12.00384 -11.84484 -11.57169 -11.46339 -11.28768 -11.15484 -11.04026 -10.92114 -10.65771 -10.50823 -10.28277 -9.84824 -9.52133 -9.43995 -9.28944 -8.96724 -8.59581 -7.79995 -6.28815 -4.39800 1.89197 2.31326 3.17423 3.26117 3.28110 3.48618 3.71108 3.99023 4.12900 4.26395 4.52689 4.84795 5.03075 5.34056 5.35445 5.45367 5.48431 5.51525 5.58955 5.61670 5.65306 5.71222 5.75652 5.83846 5.99871 6.06169 6.16276 6.32341 6.41018 6.44172 6.52613 6.72402 7.22611 7.43803 7.49777 7.68303 7.95325 8.25545 8.68088 8.76353 8.90692 9.28490 10.75684 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.008073 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.758709 B = 3467.596621 C = 5116.693936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C 0.057 3.943 4 N -0.374 5.374 5 O 0.079 5.921 6 C 0.020 3.980 7 C -0.257 4.257 8 C 0.594 3.406 9 O -0.567 6.567 10 N -0.579 5.579 11 C 0.227 3.773 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.879 5.879 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.124 3.876 21 C 0.048 3.952 22 O -0.375 6.375 23 C 0.033 3.967 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.252 0.748 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -8.464 1.040 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.106 4.106 4 N -0.083 5.083 5 O 0.023 5.977 6 C -0.060 4.060 7 C -0.264 4.264 8 C 0.382 3.618 9 O -0.449 6.449 10 N -0.308 5.308 11 C 0.107 3.893 12 C -0.590 4.590 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.516 5.516 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.000 4.000 21 C -0.030 4.030 22 O -0.293 6.293 23 C -0.064 4.064 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.948 -8.681 -0.198 9.170 hybrid contribution -0.023 0.788 1.184 1.423 sum -2.972 -7.893 0.986 8.491 Atomic orbital electron populations 1.21671 0.93880 1.01807 1.02646 1.19836 0.96623 0.87910 1.03114 1.24711 1.00106 0.98632 0.87131 1.73541 1.17558 0.93184 1.24047 1.84523 1.62707 1.26078 1.24414 1.27920 0.93995 1.02085 0.82031 1.22164 1.13165 0.95670 0.95428 1.16899 0.81570 0.79680 0.83617 1.90670 1.34148 1.40210 1.79844 1.47969 1.31108 1.44567 1.07192 1.19761 0.86533 0.86175 0.96843 1.21590 1.03423 0.90626 1.43399 0.91736 1.24998 0.94613 0.99473 0.94624 1.69943 1.08735 1.32414 1.40475 0.86550 0.79204 0.83826 0.78360 1.20336 1.20829 1.19558 1.21355 0.99227 0.95937 0.83457 1.23029 0.82525 0.98446 0.99029 1.88062 1.16315 1.33960 1.90985 1.22685 0.94666 0.90058 0.99009 0.91304 0.92965 0.92155 0.90594 0.89648 0.73229 0.92905 0.94211 0.92151 0.89121 0.89173 0.93060 0.93462 0.94684 0.94664 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 37.15 0.37 -1.61 16 2 C -0.04 -0.56 6.55 -27.88 -0.18 -0.74 16 3 C 0.06 1.07 6.84 -79.76 -0.55 0.53 16 4 N -0.37 -7.19 12.01 34.78 0.42 -6.77 16 5 O 0.08 1.54 11.06 18.65 0.21 1.75 16 6 C 0.02 0.41 9.96 30.41 0.30 0.71 16 7 C -0.26 -5.25 5.74 -102.89 -0.59 -5.84 16 8 C 0.59 12.57 7.65 -12.53 -0.10 12.48 16 9 O -0.57 -12.39 16.66 5.28 0.09 -12.30 16 10 N -0.58 -12.04 2.42 -176.34 -0.43 -12.47 16 11 C 0.23 5.23 4.55 -5.20 -0.02 5.20 16 12 C -0.55 -13.37 7.41 -34.44 -0.26 -13.62 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.07 1.67 5.36 -17.82 -0.10 1.58 16 15 N -0.88 -22.84 13.29 55.43 0.74 -22.10 16 16 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 C 0.12 2.21 5.86 -4.04 -0.02 2.19 16 21 C 0.05 0.75 6.28 37.16 0.23 0.99 16 22 O -0.37 -6.57 9.46 -35.23 -0.33 -6.90 16 23 C 0.03 0.43 11.01 101.05 1.11 1.54 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.25 5.28 5.07 -52.49 -0.27 5.01 16 30 H 0.05 1.33 7.05 -51.93 -0.37 0.97 16 31 H 0.04 0.96 5.05 -51.93 -0.26 0.70 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 34 H 0.09 1.53 7.37 -51.93 -0.38 1.14 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -27.84 333.01 -4.58 -32.42 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.47 Total: 3.62 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.20 Total: 3.40 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.73 Total: -41.34 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.04 Total: -17.45 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.84 -4.58 -32.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.698 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds