Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46931 * 2 1 4 4 N 1.30014 * 127.33847 * 269.68432 * 3 2 1 5 5 O 1.20658 * 112.30295 * 179.79645 * 4 3 2 6 6 C 1.33495 * 113.15678 * 0.49949 * 5 4 3 7 7 C 1.37361 * 106.33998 * 359.70734 * 6 5 4 8 8 C 1.47404 * 128.56605 * 180.02562 * 7 6 5 9 9 O 1.21599 * 120.00031 * 144.29056 * 8 7 6 10 10 N 1.34774 * 119.99328 * 324.28876 * 8 7 6 11 11 C 1.46496 * 120.00677 * 4.07992 * 10 8 7 12 12 C 1.50695 * 109.47506 * 94.57769 * 11 10 8 13 13 H 1.07998 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00039 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47392 * 90.00201 * 16 14 12 18 18 H 1.48501 * 109.47352 * 210.00094 * 16 14 12 19 19 H 1.48497 * 109.47248 * 329.99894 * 16 14 12 20 20 C 1.46502 * 119.99694 * 184.07006 * 10 8 7 21 21 C 1.53002 * 109.46930 * 90.00290 * 20 10 8 22 22 O 1.42899 * 109.46805 * 65.00179 * 21 20 10 23 23 C 1.42902 * 113.99750 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.47276 * 299.99464 * 1 2 3 25 25 H 1.08997 * 109.47598 * 59.99721 * 1 2 3 26 26 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47276 * 240.00536 * 2 1 3 28 28 H 1.08997 * 109.47598 * 120.00279 * 2 1 3 29 29 H 1.07998 * 126.83314 * 179.67195 * 6 5 4 30 30 H 1.09002 * 109.47475 * 214.58420 * 11 10 8 31 31 H 1.09000 * 109.46703 * 334.58218 * 11 10 8 32 32 H 0.97003 * 119.99827 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.47481 * 210.00179 * 20 10 8 34 34 H 1.09001 * 109.47141 * 330.00413 * 20 10 8 35 35 H 1.08997 * 109.47112 * 185.00270 * 21 20 10 36 36 H 1.08996 * 109.47272 * 305.00099 * 21 20 10 37 37 H 1.08999 * 109.47284 * 299.99622 * 23 22 21 38 38 H 1.09003 * 109.47341 * 60.00000 * 23 22 21 39 39 H 1.09008 * 109.46858 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3004 2.1624 -1.0337 5 8 2.6835 3.2630 -0.7207 6 6 2.7464 3.4408 0.6009 7 6 2.3297 2.2620 1.1697 8 6 2.2095 1.9235 2.5993 9 8 1.3043 1.2066 2.9804 10 7 3.1032 2.4086 3.4839 11 6 4.1402 3.3432 3.0400 12 6 3.6731 4.7576 3.2687 13 1 2.7011 4.9418 3.7018 14 6 4.4866 5.8164 2.9249 15 7 5.6701 5.5920 2.3970 16 14 3.9079 7.5696 3.2091 17 1 4.3217 8.0140 4.5643 18 1 4.5139 8.4624 2.1889 19 1 2.4280 7.6262 3.0999 20 6 3.0373 2.0013 4.8896 21 6 3.8936 0.7507 5.0989 22 8 5.2665 1.0683 4.8612 23 6 6.1563 -0.0370 5.0301 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.0626 4.3337 1.1197 30 1 5.0549 3.1667 3.6059 31 1 4.3350 3.1922 1.9782 32 1 6.2423 6.3369 2.1548 33 1 3.4122 2.8079 5.5196 34 1 2.0034 1.7825 5.1565 35 1 3.7747 0.3961 6.1227 36 1 3.5754 -0.0277 4.4055 37 1 6.0845 -0.4084 6.0523 38 1 5.8850 -0.8315 4.3349 39 1 7.1785 0.2860 4.8323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597136084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -41.937821 kcal Electronic energy + Delta-G solvation = -23229.776367 eV Core-core repulsion = 19754.457502 eV Total energy + Delta-G solvation = -3475.318865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.81508 -40.76826 -38.70359 -36.79815 -36.16555 -34.64632 -33.36491 -32.13829 -31.03452 -29.04762 -27.26711 -25.97235 -25.18646 -24.71597 -23.42745 -21.70376 -20.58010 -18.72911 -18.68064 -18.27533 -17.85291 -17.48744 -17.01606 -16.55062 -16.37036 -16.03179 -15.52541 -15.42716 -15.06200 -14.60185 -14.35388 -14.09031 -13.66555 -13.48301 -13.30033 -13.03280 -12.80739 -12.74791 -12.68014 -12.51586 -12.47922 -12.14268 -11.95733 -11.84241 -11.68489 -11.10866 -10.93168 -10.71533 -10.58703 -10.39058 -9.49533 -8.20075 -6.37396 0.26879 0.80031 1.44763 1.48866 1.56859 1.87936 2.08278 2.35754 2.49042 2.94523 3.07147 3.10433 3.40016 3.83055 4.08576 4.16262 4.24721 4.29984 4.33870 4.38531 4.41919 4.52832 4.56194 4.64710 4.80108 4.84434 4.90406 4.91688 4.96410 4.98941 5.14280 5.30762 5.33620 5.65669 5.80706 6.04487 6.28463 6.52081 6.79376 7.16932 7.23187 7.36032 8.84117 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.008073 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.758709 B = 3467.596621 C = 5116.693936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 C 0.063 3.937 4 N -0.378 5.378 5 O 0.076 5.924 6 C 0.023 3.977 7 C -0.276 4.276 8 C 0.592 3.408 9 O -0.575 6.575 10 N -0.582 5.582 11 C 0.246 3.754 12 C -0.554 4.554 13 H 0.059 0.941 14 C 0.032 3.968 15 N -0.908 5.908 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.117 3.883 21 C 0.054 3.946 22 O -0.410 6.410 23 C 0.028 3.972 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.242 0.758 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.270 0.730 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -9.259 1.274 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.100 4.100 4 N -0.089 5.089 5 O 0.022 5.978 6 C -0.058 4.058 7 C -0.283 4.283 8 C 0.381 3.619 9 O -0.458 6.458 10 N -0.310 5.310 11 C 0.125 3.875 12 C -0.592 4.592 13 H 0.077 0.923 14 C -0.171 4.171 15 N -0.546 5.546 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.005 4.005 21 C -0.023 4.023 22 O -0.330 6.330 23 C -0.068 4.068 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.258 0.742 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.589 -9.478 0.051 10.135 hybrid contribution 0.192 0.976 1.122 1.499 sum -3.397 -8.502 1.173 9.230 Atomic orbital electron populations 1.21627 0.92596 1.03497 1.01589 1.20044 0.97610 0.85841 1.04174 1.25245 0.98894 0.99812 0.86094 1.73531 1.18092 0.93143 1.24159 1.84515 1.62961 1.26456 1.23909 1.27650 0.93964 1.01781 0.82407 1.22324 1.13908 0.96343 0.95741 1.16981 0.81449 0.79595 0.83907 1.90652 1.34374 1.40677 1.80079 1.47976 1.30417 1.44175 1.08454 1.19354 0.86163 0.86295 0.95664 1.21677 1.03104 0.91314 1.43104 0.92268 1.25605 0.94553 1.02644 0.94262 1.70031 1.09724 1.33435 1.41417 0.85652 0.78832 0.79812 0.78062 1.20302 1.20547 1.19164 1.21569 1.00382 0.96904 0.81690 1.22963 0.81718 0.96842 1.00784 1.88010 1.17261 1.36227 1.91482 1.22869 0.94074 0.89181 1.00715 0.93603 0.92685 0.89137 0.88234 0.89804 0.74244 0.95288 0.95390 0.92032 0.89613 0.88241 0.89658 0.94061 0.92250 0.94021 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.89 71.98 0.71 -2.76 16 2 C -0.04 -1.11 6.55 29.85 0.20 -0.92 16 3 C 0.06 2.31 6.84 45.16 0.31 2.62 16 4 N -0.38 -14.26 12.01 -44.77 -0.54 -14.80 16 5 O 0.08 2.96 11.06 76.97 0.85 3.81 16 6 C 0.02 0.93 9.96 67.61 0.67 1.61 16 7 C -0.28 -11.28 5.74 -18.74 -0.11 -11.39 16 8 C 0.59 25.03 7.65 86.66 0.66 25.69 16 9 O -0.57 -24.80 16.66 -4.03 -0.07 -24.87 16 10 N -0.58 -24.30 2.42 -830.08 -2.01 -26.31 16 11 C 0.25 11.56 4.55 85.63 0.39 11.95 16 12 C -0.55 -27.07 7.41 25.60 0.19 -26.88 16 13 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 14 C 0.03 1.57 5.36 84.66 0.45 2.02 16 15 N -0.91 -47.63 13.29 21.45 0.28 -47.35 16 16 Si 0.95 39.52 29.54 68.60 2.03 41.55 16 17 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 C 0.12 4.13 5.86 86.38 0.51 4.63 16 21 C 0.05 1.66 6.28 71.98 0.45 2.11 16 22 O -0.41 -14.14 9.46 -148.98 -1.41 -15.55 16 23 C 0.03 0.69 11.01 113.37 1.25 1.94 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.24 10.38 5.07 -2.91 -0.01 10.36 16 30 H 0.03 1.51 7.05 -2.39 -0.02 1.49 16 31 H 0.03 1.39 5.05 -2.39 -0.01 1.38 16 32 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.09 3.07 8.07 -2.39 -0.02 3.06 16 34 H 0.10 3.28 7.37 -2.39 -0.02 3.27 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -58.56 333.01 5.88 -52.69 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.05 Total: 20.20 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.68 Total: 10.63 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.26 Total: -88.46 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.62 Total: -36.61 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -58.56 5.88 -52.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.748 kcal (2) G-P(sol) polarization free energy of solvation -58.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds