Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47267 * 60.00069 * 9 7 5 11 11 H 1.48504 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47138 * 300.00053 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21494 * 119.99763 * 359.72900 * 15 14 13 17 17 C 1.48326 * 120.00252 * 179.72903 * 15 14 13 18 18 C 1.42270 * 126.94185 * 179.71394 * 17 15 14 19 19 C 1.35315 * 103.92336 * 179.90952 * 18 17 15 20 20 C 1.50703 * 126.66486 * 180.13005 * 19 18 17 21 21 O 1.42895 * 109.47190 * 90.28286 * 20 19 18 22 22 O 1.34018 * 106.66671 * 0.34199 * 19 18 17 23 23 N 1.20902 * 111.84897 * 359.76613 * 22 19 18 24 24 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 25 25 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 29 29 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 30 30 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 32 32 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 34 34 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 35 35 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 36 36 H 1.08002 * 128.03560 * 0.02562 * 18 17 15 37 37 H 1.08998 * 109.46779 * 210.28334 * 20 19 18 38 38 H 1.08995 * 109.46785 * 330.27668 * 20 19 18 39 39 H 0.96704 * 114.00229 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2360 0.3995 -5.2576 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5724 -1.4813 3.7810 17 6 1.3883 0.2118 4.8806 18 6 1.6357 -0.1457 6.2353 19 6 0.9801 0.8003 6.9467 20 6 0.9082 0.9086 8.4481 21 8 1.9881 1.7167 8.9197 22 8 0.4033 1.6197 6.0567 23 7 0.6364 1.2838 4.9189 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 2.8615 -1.8822 -4.7336 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9973 0.7603 2.3565 36 1 2.2142 -0.9777 6.6089 37 1 -0.0393 1.3651 8.7344 38 1 0.9797 -0.0862 8.8879 39 1 2.0044 1.8302 9.8800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601580446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = -36.916011 kcal Electronic energy + Delta-G solvation = -21725.341266 eV Core-core repulsion = 18250.240163 eV Total energy + Delta-G solvation = -3475.101103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.34437 -39.62790 -37.54032 -37.16893 -34.25482 -33.73510 -32.67278 -31.99725 -27.29818 -27.11795 -26.68593 -26.51725 -24.44048 -23.04724 -22.39523 -20.09408 -18.58529 -18.48095 -17.71620 -17.53103 -16.84115 -16.34239 -15.59866 -15.30133 -15.13102 -14.85891 -14.50926 -13.80281 -13.77346 -13.64548 -13.13487 -12.78448 -12.56480 -12.22108 -12.05865 -11.92924 -11.19228 -11.00670 -10.87591 -10.74548 -10.66481 -10.62423 -10.43864 -10.29146 -10.25703 -9.97141 -9.89545 -9.21456 -8.95216 -8.87493 -8.35835 -6.00089 -4.01426 0.85129 1.36502 2.52561 3.02653 3.16184 3.32524 3.37716 3.39360 3.75360 3.94425 4.30188 4.45388 4.51248 4.68279 4.78804 5.09180 5.13989 5.35279 5.45247 5.57107 5.58506 5.73589 6.16022 6.18962 6.22632 6.36465 6.44867 6.62640 6.70121 6.97133 7.04170 7.06127 7.09922 7.48228 7.62748 7.74781 7.78632 7.98210 8.16165 8.40213 9.02894 9.61621 11.11373 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.002904 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.327873 B = 9639.613593 C = 9964.271550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.129 4.129 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.126 3.874 14 N -0.702 5.702 15 C 0.590 3.410 16 O -0.526 6.526 17 C -0.023 4.023 18 C -0.155 4.155 19 C -0.046 4.046 20 C 0.162 3.838 21 O -0.565 6.565 22 O 0.131 5.869 23 N -0.324 5.324 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.183 0.817 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 5.199 25.120 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.354 5.354 15 C 0.373 3.627 16 O -0.401 6.401 17 C -0.182 4.182 18 C -0.177 4.177 19 C -0.109 4.109 20 C 0.084 3.916 21 O -0.372 6.372 22 O 0.053 5.947 23 N -0.023 5.023 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.200 0.800 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.655 5.115 23.382 24.384 hybrid contribution -0.260 0.165 -0.008 0.308 sum -4.915 5.280 23.375 24.462 Atomic orbital electron populations 1.21777 0.95167 1.01240 1.00397 1.20927 0.95597 0.95933 0.94835 1.21778 1.00603 0.95826 1.00402 1.19091 0.96408 0.95233 0.89349 1.21138 1.31286 1.12101 0.90488 0.92284 1.25012 0.95297 0.95089 0.99087 1.69952 1.36871 1.23006 1.23577 0.86695 0.79143 0.79771 0.82604 1.20313 1.21390 1.20323 1.21785 0.99239 0.96187 0.82401 1.46119 1.52267 1.31668 1.05299 1.16882 0.80622 0.83611 0.81599 1.90801 1.37916 1.25297 1.86131 1.23688 1.01888 0.95922 0.96729 1.22505 1.02364 1.02469 0.90383 1.24004 1.00001 0.92608 0.94334 1.20242 0.91213 0.96498 0.83693 1.86556 1.49835 1.72581 1.28234 1.84784 1.55342 1.44304 1.10318 1.74204 1.14848 1.13640 0.99609 0.95232 0.91251 0.93272 0.93261 0.91242 0.95230 0.96242 0.96245 0.92965 0.91257 0.91230 0.75825 0.79953 0.90658 0.89563 0.75958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 2 C -0.07 -1.41 0.54 -154.51 -0.08 -1.50 16 3 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.68 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.13 2.30 4.56 -4.04 -0.02 2.28 16 14 N -0.70 -11.36 4.96 -61.09 -0.30 -11.67 16 15 C 0.59 9.80 7.85 -12.11 -0.10 9.70 16 16 O -0.53 -10.11 16.95 5.37 0.09 -10.02 16 17 C -0.02 -0.33 7.19 -82.53 -0.59 -0.92 16 18 C -0.15 -1.73 10.92 -39.08 -0.43 -2.16 16 19 C -0.05 -0.43 7.10 -35.35 -0.25 -0.68 16 20 C 0.16 0.78 7.60 36.01 0.27 1.05 16 21 O -0.56 -3.34 13.64 -35.23 -0.48 -3.82 16 22 O 0.13 1.49 11.18 17.24 0.19 1.68 16 23 N -0.32 -4.36 11.84 33.29 0.39 -3.97 16 24 H 0.03 0.46 6.87 -51.93 -0.36 0.10 16 25 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 29 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.41 6.08 5.92 -40.82 -0.24 5.84 16 36 H 0.18 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.39 0.16 9.12 45.56 0.42 0.57 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -33.51 330.91 -4.94 -38.45 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.46 Total: 1.82 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.07 Total: -8.01 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.83 Total: -41.41 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.20 Total: -12.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.51 -4.94 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601580446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.534 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds