Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99474 * 3 2 1 6 6 H 1.48499 * 109.47339 * 59.99974 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99935 * 179.72905 * 12 11 10 15 15 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47229 * 324.99619 * 15 14 12 17 17 C 1.52996 * 109.47520 * 84.99489 * 15 14 12 18 18 C 1.52996 * 109.47336 * 295.00295 * 17 15 14 19 19 O 1.42897 * 109.47324 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47421 * 205.00076 * 15 14 12 21 21 C 1.34509 * 125.79521 * 139.71039 * 20 15 14 22 22 C 1.41385 * 106.84283 * 179.88744 * 21 20 15 23 23 C 1.34519 * 106.83844 * 0.37711 * 22 21 20 24 24 O 1.34304 * 108.42253 * 359.76848 * 23 22 21 25 25 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 27 27 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 28 28 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 29 29 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 30 30 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 31 31 H 0.97004 * 120.00018 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.46740 * 55.00430 * 17 15 14 33 33 H 1.08997 * 109.47212 * 175.00020 * 17 15 14 34 34 H 1.09007 * 109.47003 * 300.00103 * 18 17 15 35 35 H 1.09007 * 109.47149 * 59.99737 * 18 17 15 36 36 H 0.96709 * 114.00063 * 180.02562 * 19 18 17 37 37 H 1.08001 * 126.57730 * 0.03019 * 21 20 15 38 38 H 1.07996 * 126.58166 * 180.16627 * 22 21 20 39 39 H 1.08001 * 125.78893 * 179.75271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4025 -6.0981 0.0014 14 7 1.5127 -7.2652 0.0079 15 6 2.2451 -8.5339 0.0091 16 1 3.1537 -8.4296 -0.5840 17 6 2.6144 -8.9083 1.4459 18 6 3.5936 -7.8751 2.0066 19 8 3.9381 -8.2244 3.3487 20 6 1.3789 -9.6147 -0.5848 21 6 1.7931 -10.5852 -1.4190 22 6 0.6604 -11.3748 -1.7234 23 6 -0.3799 -10.8344 -1.0636 24 8 0.0612 -9.7686 -0.3756 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.5427 -4.9308 0.0011 31 1 0.5427 -7.2652 0.0122 32 1 1.7138 -8.9259 2.0596 33 1 3.0804 -9.8936 1.4563 34 1 4.4943 -7.8575 1.3927 35 1 3.1276 -6.8897 1.9962 36 1 4.5570 -7.6112 3.7683 37 1 2.7985 -10.7343 -1.7841 38 1 0.6346 -12.2428 -2.3653 39 1 -1.3973 -11.1962 -1.0839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613618662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = -75.561810 kcal Electronic energy + Delta-G solvation = -21790.269333 eV Core-core repulsion = 18313.492423 eV Total energy + Delta-G solvation = -3476.776910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.86123 -39.93399 -37.12429 -35.69526 -34.65918 -33.29459 -32.91549 -31.56601 -29.67937 -29.26559 -25.65114 -24.44558 -22.13442 -21.91600 -21.13341 -20.65203 -20.34037 -18.53088 -17.48675 -17.31930 -16.51345 -16.22353 -16.18321 -15.33980 -14.86469 -14.63784 -14.51218 -13.97564 -13.65697 -13.54193 -13.41504 -13.08170 -12.87853 -12.68536 -12.48978 -12.29546 -11.70087 -11.20494 -11.09351 -11.01964 -10.62708 -10.35390 -10.18166 -10.01803 -9.82789 -9.59188 -9.27010 -9.17988 -8.75727 -8.51524 -8.30662 -6.10372 -4.13136 1.42305 2.33126 2.64969 2.96177 3.27778 3.35548 3.40613 3.47153 4.04852 4.37895 4.49239 4.61034 4.74979 4.82972 4.96843 5.04566 5.26912 5.30251 5.46388 5.53700 5.63394 5.69617 5.79687 5.98727 6.05809 6.18398 6.25500 6.36175 6.42645 6.74119 6.87704 6.93810 7.15515 7.54756 7.61431 7.65888 7.88613 8.22611 8.35438 8.86365 8.93998 9.51809 11.01308 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.003258 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.758641 B = 8592.426676 C = 9446.974474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.701 3.299 13 O -0.595 6.595 14 N -0.750 5.750 15 C 0.255 3.745 16 H 0.118 0.882 17 C -0.129 4.129 18 C 0.081 3.919 19 O -0.584 6.584 20 C -0.017 4.017 21 C -0.195 4.195 22 C -0.214 4.214 23 C -0.037 4.037 24 O -0.172 6.172 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.394 0.606 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.380 0.620 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 -22.138 -0.529 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.018 3.982 11 N -0.389 5.389 12 C 0.401 3.599 13 O -0.474 6.474 14 N -0.407 5.407 15 C 0.149 3.851 16 H 0.135 0.865 17 C -0.168 4.168 18 C 0.004 3.996 19 O -0.390 6.390 20 C -0.068 4.068 21 C -0.215 4.215 22 C -0.233 4.233 23 C -0.105 4.105 24 O -0.068 6.068 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.234 0.766 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.227 0.773 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.746 -22.264 -0.480 22.282 hybrid contribution -0.231 1.142 -0.151 1.175 sum 0.515 -21.122 -0.631 21.138 Atomic orbital electron populations 1.69966 1.06094 1.26768 1.50465 1.25000 0.94895 0.99435 0.95008 0.86457 0.80168 0.83332 0.77609 1.19563 1.20945 1.20947 1.21080 0.93284 0.90323 1.51211 0.92165 1.19336 0.94273 0.91091 0.97856 1.21611 0.95638 0.80289 1.00675 1.45566 1.10012 1.05250 1.78063 1.15987 0.85687 0.80376 0.77834 1.90887 1.11479 1.86572 1.58489 1.45202 1.09868 1.04040 1.81559 1.19110 0.92330 0.77935 0.95724 0.86465 1.21984 1.00353 0.99822 0.94593 1.22275 0.97752 0.97438 0.82165 1.86352 1.68414 1.55601 1.28638 1.22406 0.82079 1.00363 1.01960 1.21607 1.00825 0.97315 1.01742 1.21844 0.92663 1.03478 1.05347 1.24089 1.00289 0.88773 0.97301 1.84000 1.23199 1.42240 1.57325 0.92902 0.95957 0.95945 0.92736 0.92665 0.77248 0.76599 0.90730 0.90190 0.92784 0.92433 0.77278 0.83123 0.83288 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.14 2.93 5.61 -4.04 -0.02 2.91 16 11 N -0.74 -12.63 5.56 -65.23 -0.36 -12.99 16 12 C 0.70 11.56 7.14 -86.91 -0.62 10.94 16 13 O -0.59 -11.40 13.46 5.29 0.07 -11.33 16 14 N -0.75 -9.62 5.03 -59.81 -0.30 -9.92 16 15 C 0.26 2.97 2.71 -69.08 -0.19 2.79 16 16 H 0.12 1.43 7.57 -51.93 -0.39 1.04 16 17 C -0.13 -1.52 5.24 -26.73 -0.14 -1.66 16 18 C 0.08 1.10 5.64 37.16 0.21 1.31 16 19 O -0.58 -7.67 13.66 -35.23 -0.48 -8.15 16 20 C -0.02 -0.19 6.12 -35.62 -0.22 -0.40 16 21 C -0.20 -1.90 10.80 -39.70 -0.43 -2.33 16 22 C -0.21 -1.81 10.91 -39.70 -0.43 -2.25 16 23 C -0.04 -0.30 12.09 29.42 0.36 0.05 16 24 O -0.17 -1.81 10.31 5.68 0.06 -1.75 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.39 5.94 8.49 -40.82 -0.35 5.60 16 31 H 0.40 4.47 8.33 -40.82 -0.34 4.13 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.75 7.84 -51.92 -0.41 0.34 16 35 H 0.06 0.91 5.64 -51.93 -0.29 0.62 16 36 H 0.38 3.54 9.12 45.56 0.42 3.96 16 37 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -32.85 334.15 -7.01 -39.86 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.71 Total: 9.85 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.04 Total: -1.58 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.07 Total: -48.18 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.35 Total: -21.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.85 -7.01 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613618662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.704 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds