Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99474 * 3 2 1 6 6 H 1.48499 * 109.47339 * 59.99974 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99935 * 179.72905 * 12 11 10 15 15 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47229 * 324.99619 * 15 14 12 17 17 C 1.52996 * 109.47520 * 84.99489 * 15 14 12 18 18 C 1.52996 * 109.47336 * 295.00295 * 17 15 14 19 19 O 1.42897 * 109.47324 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47421 * 205.00076 * 15 14 12 21 21 C 1.34509 * 125.79521 * 139.71039 * 20 15 14 22 22 C 1.41385 * 106.84283 * 179.88744 * 21 20 15 23 23 C 1.34519 * 106.83844 * 0.37711 * 22 21 20 24 24 O 1.34304 * 108.42253 * 359.76848 * 23 22 21 25 25 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 27 27 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 28 28 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 29 29 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 30 30 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 31 31 H 0.97004 * 120.00018 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.46740 * 55.00430 * 17 15 14 33 33 H 1.08997 * 109.47212 * 175.00020 * 17 15 14 34 34 H 1.09007 * 109.47003 * 300.00103 * 18 17 15 35 35 H 1.09007 * 109.47149 * 59.99737 * 18 17 15 36 36 H 0.96709 * 114.00063 * 180.02562 * 19 18 17 37 37 H 1.08001 * 126.57730 * 0.03019 * 21 20 15 38 38 H 1.07996 * 126.58166 * 180.16627 * 22 21 20 39 39 H 1.08001 * 125.78893 * 179.75271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4025 -6.0981 0.0014 14 7 1.5127 -7.2652 0.0079 15 6 2.2451 -8.5339 0.0091 16 1 3.1537 -8.4296 -0.5840 17 6 2.6144 -8.9083 1.4459 18 6 3.5936 -7.8751 2.0066 19 8 3.9381 -8.2244 3.3487 20 6 1.3789 -9.6147 -0.5848 21 6 1.7931 -10.5852 -1.4190 22 6 0.6604 -11.3748 -1.7234 23 6 -0.3799 -10.8344 -1.0636 24 8 0.0612 -9.7686 -0.3756 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.5427 -4.9308 0.0011 31 1 0.5427 -7.2652 0.0122 32 1 1.7138 -8.9259 2.0596 33 1 3.0804 -9.8936 1.4563 34 1 4.4943 -7.8575 1.3927 35 1 3.1276 -6.8897 1.9962 36 1 4.5570 -7.6112 3.7683 37 1 2.7985 -10.7343 -1.7841 38 1 0.6346 -12.2428 -2.3653 39 1 -1.3973 -11.1962 -1.0839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613618662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = -101.375494 kcal Electronic energy + Delta-G solvation = -21791.388699 eV Core-core repulsion = 18313.492423 eV Total energy + Delta-G solvation = -3477.896275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.57209 -41.22524 -38.24146 -36.92756 -36.18262 -34.84192 -33.99230 -32.82999 -31.02095 -30.46281 -27.01376 -25.98853 -23.20281 -22.86143 -22.65229 -21.84427 -21.28498 -19.69519 -18.57754 -18.40688 -18.29945 -17.36632 -16.98037 -16.61267 -16.47552 -16.07056 -15.82423 -15.21538 -15.05931 -14.86682 -14.44538 -14.26716 -13.87423 -13.75066 -13.51711 -13.34062 -13.19477 -12.95210 -12.68359 -12.50387 -12.25464 -12.05321 -11.64270 -11.48239 -11.19919 -10.92573 -10.85837 -10.60165 -10.39322 -9.81677 -9.45910 -8.23437 -6.33562 0.69212 1.41769 1.42692 1.55112 1.59378 1.79329 1.96450 2.15058 2.41797 3.11685 3.15030 3.33086 3.66686 3.94998 4.07340 4.15152 4.21439 4.35944 4.44155 4.50499 4.54542 4.66980 4.85484 4.88588 4.90406 5.00006 5.04269 5.15799 5.31539 5.34713 5.51803 5.59578 5.60644 5.79246 5.97077 6.16672 6.17659 6.77766 6.80296 7.04827 7.35899 7.54063 8.88725 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.003258 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.758641 B = 8592.426676 C = 9446.974474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.162 3.838 11 N -0.734 5.734 12 C 0.703 3.297 13 O -0.621 6.621 14 N -0.734 5.734 15 C 0.260 3.740 16 H 0.111 0.889 17 C -0.121 4.121 18 C 0.087 3.913 19 O -0.593 6.593 20 C -0.040 4.040 21 C -0.197 4.197 22 C -0.226 4.226 23 C -0.033 4.033 24 O -0.186 6.186 25 H 0.265 0.735 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.405 0.595 31 H 0.410 0.590 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.395 0.605 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -23.240 -0.840 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.038 3.962 11 N -0.388 5.388 12 C 0.403 3.597 13 O -0.502 6.502 14 N -0.391 5.391 15 C 0.154 3.846 16 H 0.129 0.871 17 C -0.160 4.160 18 C 0.009 3.991 19 O -0.401 6.401 20 C -0.090 4.090 21 C -0.216 4.216 22 C -0.245 4.245 23 C -0.100 4.100 24 O -0.083 6.083 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.240 0.760 31 H 0.245 0.755 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.244 0.756 37 H 0.180 0.820 38 H 0.189 0.811 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.633 -23.405 -0.786 23.427 hybrid contribution -0.238 1.378 -0.054 1.400 sum 0.395 -22.027 -0.839 22.047 Atomic orbital electron populations 1.70069 1.07566 1.27894 1.51188 1.25875 0.95783 1.03122 0.94489 0.85395 0.79044 0.78778 0.77819 1.18824 1.20313 1.20317 1.21497 0.93644 0.91829 1.51246 0.92146 1.19140 0.94307 0.91821 0.96256 1.21074 0.94494 0.80783 0.99815 1.45270 1.10425 1.04524 1.78595 1.15993 0.85332 0.80837 0.77522 1.90869 1.12752 1.87020 1.59607 1.45067 1.10364 1.03429 1.80218 1.19064 0.92366 0.77482 0.95640 0.87100 1.21927 0.99747 0.99863 0.94440 1.22150 0.97697 0.96788 0.82459 1.86323 1.69024 1.56327 1.28432 1.22164 0.82494 1.00891 1.03498 1.21929 1.01903 0.96945 1.00844 1.22187 0.92168 1.04213 1.05918 1.24879 1.01777 0.87498 0.95818 1.83986 1.22995 1.43270 1.58002 0.92598 0.97455 0.97435 0.93532 0.93557 0.75989 0.75453 0.91075 0.88902 0.93352 0.94865 0.75566 0.82019 0.81093 0.74549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C 0.16 6.89 5.61 86.38 0.48 7.37 16 11 N -0.73 -25.32 5.56 -478.53 -2.66 -27.98 16 12 C 0.70 23.18 7.14 179.05 1.28 24.46 16 13 O -0.62 -23.99 13.46 -3.99 -0.05 -24.05 16 14 N -0.73 -18.49 5.03 -461.41 -2.32 -20.81 16 15 C 0.26 5.90 2.71 44.25 0.12 6.02 16 16 H 0.11 2.68 7.57 -2.39 -0.02 2.66 16 17 C -0.12 -2.78 5.24 30.59 0.16 -2.62 16 18 C 0.09 2.35 5.64 71.98 0.41 2.75 16 19 O -0.59 -15.20 13.66 -148.98 -2.03 -17.24 16 20 C -0.04 -0.81 6.12 24.83 0.15 -0.66 16 21 C -0.20 -3.48 10.80 22.19 0.24 -3.24 16 22 C -0.23 -3.26 10.91 22.19 0.24 -3.01 16 23 C -0.03 -0.45 12.09 66.97 0.81 0.36 16 24 O -0.19 -3.59 10.31 -2.59 -0.03 -3.62 16 25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.41 12.19 8.49 -92.70 -0.79 11.41 16 31 H 0.41 8.83 8.33 -92.71 -0.77 8.06 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.35 7.84 -2.38 -0.02 1.33 16 35 H 0.03 1.06 5.64 -2.38 -0.01 1.05 16 36 H 0.39 7.15 9.12 -74.05 -0.68 6.47 16 37 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.24 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -69.73 334.15 -1.19 -70.92 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -1.14 Total: 27.77 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 4.74 Total: 3.54 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.69 Total: -102.82 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.12 Total: -44.90 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.73 -1.19 -70.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613618662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.458 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds