Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48501 * 109.47085 * 270.00001 * 3 2 1 5 5 H 1.48497 * 109.46789 * 30.00010 * 3 2 1 6 6 H 1.48500 * 109.46897 * 149.99977 * 3 2 1 7 7 C 1.37885 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46997 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47337 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99966 * 180.02562 * 11 10 9 13 13 O 1.21592 * 120.00301 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46950 * 325.00285 * 15 14 12 17 17 C 1.53000 * 109.46808 * 205.00186 * 15 14 12 18 18 C 1.53000 * 109.47214 * 65.00388 * 17 15 14 19 19 O 1.42897 * 109.47128 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.46970 * 85.00553 * 15 14 12 21 21 C 1.34510 * 125.79112 * 220.00001 * 20 15 14 22 22 C 1.41374 * 106.84414 * 179.97438 * 21 20 15 23 23 C 1.34512 * 106.84112 * 0.02562 * 22 21 20 24 24 O 1.34299 * 108.41966 * 359.72973 * 23 22 21 25 25 H 0.97000 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46696 * 60.00619 * 9 7 2 27 27 H 1.09002 * 109.47753 * 300.00134 * 9 7 2 28 28 H 1.09005 * 109.46767 * 60.00351 * 10 9 7 29 29 H 1.08996 * 109.47766 * 300.00872 * 10 9 7 30 30 H 0.96999 * 119.99984 * 359.97438 * 11 10 9 31 31 H 0.96995 * 120.00018 * 0.27633 * 14 12 11 32 32 H 1.09004 * 109.46768 * 185.00053 * 17 15 14 33 33 H 1.09003 * 109.47442 * 305.00120 * 17 15 14 34 34 H 1.08994 * 109.47015 * 299.99550 * 18 17 15 35 35 H 1.09003 * 109.47135 * 59.99545 * 18 17 15 36 36 H 0.96701 * 114.00368 * 179.97438 * 19 18 17 37 37 H 1.08006 * 126.57688 * 0.03383 * 21 20 15 38 38 H 1.08004 * 126.58074 * 179.97438 * 22 21 20 39 39 H 1.08003 * 125.78992 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0024 12 6 2.1867 -6.0980 -0.0031 13 8 3.4026 -6.0980 -0.0027 14 7 1.5128 -7.2652 -0.0031 15 6 2.2454 -8.5340 -0.0044 16 1 3.1556 -8.4273 -0.5945 17 6 1.3677 -9.6289 -0.6139 18 6 1.1058 -9.3114 -2.0875 19 8 0.2865 -10.3344 -2.6569 20 6 2.6048 -8.9078 1.4106 21 6 3.7703 -9.4480 1.8096 22 6 3.6780 -9.6340 3.2080 23 6 2.4615 -9.1969 3.5799 24 8 1.8180 -8.7530 2.4879 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8714 -3.6040 -0.8921 30 1 0.5428 -4.9308 -0.0016 31 1 0.5429 -7.2652 -0.0067 32 1 1.8771 -10.5893 -0.5342 33 1 0.4195 -9.6750 -0.0781 34 1 0.5964 -8.3511 -2.1672 35 1 2.0539 -9.2653 -2.6233 36 1 0.0793 -10.1977 -3.5915 37 1 4.6149 -9.6919 1.1822 38 1 4.4382 -10.0485 3.8537 39 1 2.0706 -9.1979 4.5867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613618663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = -77.516684 kcal Electronic energy + Delta-G solvation = -21708.683775 eV Core-core repulsion = 18231.822095 eV Total energy + Delta-G solvation = -3476.861680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.60187 -39.72913 -37.56447 -35.79514 -34.65208 -33.07097 -32.85104 -31.61274 -29.67026 -29.22285 -25.63054 -24.45621 -22.08827 -21.81434 -21.22113 -20.68314 -20.24798 -18.23038 -17.87922 -17.34023 -16.44097 -16.12051 -15.87198 -15.42911 -15.23813 -14.62690 -14.51610 -14.16253 -13.73908 -13.64835 -13.19825 -12.85014 -12.78327 -12.70272 -12.32645 -12.25970 -11.83182 -11.42635 -11.19054 -11.03524 -10.63187 -10.33255 -10.28068 -9.98474 -9.92691 -9.57004 -9.27783 -9.24442 -8.54159 -8.48023 -8.28273 -6.09198 -4.11803 1.67268 2.55565 2.83119 3.03466 3.29742 3.35917 3.40602 3.55914 3.83488 4.38991 4.55284 4.62402 4.68408 4.79343 4.95126 5.00877 5.10885 5.24389 5.25965 5.28006 5.62083 5.72923 5.76849 5.85878 6.02994 6.27425 6.36381 6.39133 6.51108 6.76906 6.97522 7.09338 7.19393 7.30303 7.56150 7.63123 7.89915 8.24897 8.38996 8.91205 8.96436 9.52955 11.02478 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.003402 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.685585 B = 8228.966856 C = 9222.454607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.748 5.748 15 C 0.254 3.746 16 H 0.119 0.881 17 C -0.125 4.125 18 C 0.076 3.924 19 O -0.576 6.576 20 C -0.017 4.017 21 C -0.199 4.199 22 C -0.215 4.215 23 C -0.044 4.044 24 O -0.168 6.168 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.394 0.606 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.382 0.618 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -21.964 0.071 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.389 5.389 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.404 5.404 15 C 0.147 3.853 16 H 0.136 0.864 17 C -0.163 4.163 18 C -0.002 4.002 19 O -0.382 6.382 20 C -0.069 4.069 21 C -0.219 4.219 22 C -0.234 4.234 23 C -0.112 4.112 24 O -0.063 6.063 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.229 0.771 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.422 -21.891 0.663 21.948 hybrid contribution -0.262 1.146 -0.278 1.208 sum 1.160 -20.745 0.385 20.781 Atomic orbital electron populations 1.69957 1.06095 1.26853 1.50444 1.24995 0.94888 0.99400 0.94996 0.86511 0.79860 0.82989 0.78192 1.20558 1.21180 1.19707 1.21052 0.93271 0.90353 1.51276 0.92220 1.19325 0.94249 0.91068 0.97814 1.21605 0.95643 0.80331 1.00667 1.45532 1.09902 1.05251 1.78240 1.16061 0.85676 0.80459 0.77813 1.90902 1.11618 1.86517 1.58043 1.45218 1.09566 1.04078 1.81566 1.19120 0.96901 0.82377 0.86923 0.86380 1.21810 1.01121 0.98616 0.94777 1.22128 0.94179 0.90447 0.93425 1.86430 1.72348 1.49452 1.29925 1.22849 0.91291 1.03643 0.89134 1.21551 0.98477 1.06348 0.95514 1.21801 0.98481 1.07431 0.95681 1.24032 0.93696 1.02492 0.90932 1.84009 1.42336 1.64824 1.15144 0.92863 0.95967 0.95964 0.92794 0.92722 0.77327 0.76785 0.89109 0.90043 0.92901 0.93142 0.77066 0.83491 0.83566 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.00 16 11 N -0.74 -13.01 5.56 -65.22 -0.36 -13.37 16 12 C 0.70 12.14 8.52 -86.92 -0.74 11.40 16 13 O -0.59 -12.58 16.01 5.28 0.08 -12.50 16 14 N -0.75 -9.46 4.52 -59.81 -0.27 -9.73 16 15 C 0.25 2.90 2.42 -69.08 -0.17 2.74 16 16 H 0.12 1.43 7.57 -51.93 -0.39 1.04 16 17 C -0.13 -1.12 5.10 -26.73 -0.14 -1.26 16 18 C 0.08 0.63 6.93 37.16 0.26 0.89 16 19 O -0.58 -4.92 13.66 -35.23 -0.48 -5.41 16 20 C -0.02 -0.22 6.12 -35.63 -0.22 -0.44 16 21 C -0.20 -2.47 10.80 -39.71 -0.43 -2.90 16 22 C -0.21 -2.42 10.91 -39.71 -0.43 -2.86 16 23 C -0.04 -0.48 12.09 29.41 0.36 -0.13 16 24 O -0.17 -2.24 10.64 5.72 0.06 -2.18 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.39 5.98 8.49 -40.82 -0.35 5.63 16 31 H 0.40 4.06 8.61 -40.82 -0.35 3.70 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.44 7.75 -51.93 -0.40 0.03 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 1.65 9.12 45.56 0.42 2.07 16 37 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.20 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -34.97 341.46 -7.04 -42.01 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.85 Total: 7.65 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.09 Total: -2.62 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.10 Total: -48.51 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.34 Total: -20.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.97 -7.04 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613618663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.502 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds